genome.fa.s22.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  62  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17149536--17149572	17	2.1	19	90	10	60	16	21	0	62	1.33
17152915--17152944	15	2.0	15	93	0	51	70	0	0	30	0.88
17154421--17154479	22	2.6	23	86	2	75	69	1	1	27	1.07
17155047--17155076	12	2.5	12	100	0	60	60	6	0	33	1.23
17160181--17160329	78	1.9	77	81	9	178	34	10	11	43	1.74
17160181--17160329	38	3.9	37	79	11	133	34	10	11	43	1.74
17166486--17166642	38	4.1	38	80	8	149	33	8	10	47	1.68
17166486--17166634	78	1.9	77	82	9	187	34	8	10	46	1.68
17168923--17168947	13	1.9	13	100	0	50	56	0	0	44	0.99
17169417--17169489	20	3.8	19	70	21	55	65	6	0	27	1.17
17177173--17177210	14	2.6	14	88	12	51	10	31	0	57	1.32
17193594--17193634	20	2.0	20	86	9	57	78	7	4	9	1.10
17194634--17194687	21	2.6	21	84	0	72	29	5	35	29	1.80
17197687--17197747	25	2.6	25	79	7	74	57	1	36	4	1.30
17198758--17198819	27	2.3	27	75	10	65	27	20	33	17	1.96
17198805--17198874	27	2.6	27	74	0	68	34	20	25	20	1.96
17205079--17205112	3	11.7	3	93	6	61	32	35	0	32	1.58
17213640--17213670	15	2.1	15	93	0	53	83	0	6	9	0.79
17218993--17219046	25	2.1	26	82	3	65	68	5	5	20	1.30
17222456--17222496	21	2.0	21	85	9	57	26	2	24	46	1.65
17228242--17228280	19	2.0	20	95	5	71	35	5	25	33	1.78
17231560--17231619	21	2.9	21	85	2	77	70	3	0	26	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17247171--17247451	41	6.9	40	69	17	170	42	0	3	53	1.23
17247276--17247321	18	2.6	18	86	6	58	43	0	2	54	1.12
17247337--17247389	22	2.5	20	77	19	54	37	0	5	56	1.23
17247171--17247463	122	2.4	122	95	1	518	42	0	3	52	1.24
17247670--17247715	16	2.9	16	96	3	85	19	30	6	43	1.76
17258752--17258807	23	2.4	23	93	0	94	42	17	23	16	1.88
17262064--17262101	19	2.0	19	100	0	76	26	15	26	31	1.96
17268089--17268167	25	3.2	25	77	16	83	24	20	22	32	1.97
17268054--17268167	50	2.3	51	83	3	133	24	19	22	33	1.97
17270362--17270388	8	3.4	8	100	0	54	33	0	0	66	0.92
17272081--17272133	6	8.8	6	93	0	79	28	1	3	66	1.20
17279960--17280002	21	2.0	21	90	0	68	32	18	9	39	1.83
17281228--17281483	127	2.0	128	96	0	469	28	19	12	39	1.89
17304872--17304936	30	2.2	30	97	2	123	35	12	12	40	1.80
17307879--17307956	38	2.1	38	100	0	156	33	20	25	20	1.97
17310544--17310891	40	8.7	40	93	0	588	30	20	27	22	1.98
17319461--17319808	40	8.7	40	93	0	588	30	20	27	22	1.98
17322718--17322778	26	2.3	26	88	0	86	60	4	4	29	1.38
17322797--17322836	21	1.9	21	84	0	53	57	2	7	32	1.40
17324267--17324301	14	2.4	15	85	9	54	25	5	14	54	1.62
17325092--17325364	88	3.1	88	79	2	305	26	23	20	30	1.99
17325414--17325813	44	9.1	44	67	13	126	27	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17325325--17325887	176	3.2	175	86	3	792	27	24	18	29	1.98
17325808--17325989	44	4.1	44	87	2	249	29	26	15	28	1.96
17325414--17325963	88	6.3	87	68	10	305	27	25	17	29	1.97
17328302--17328359	21	2.7	22	78	19	61	12	5	5	77	1.09
17328302--17328361	20	2.8	20	85	7	75	13	5	6	75	1.18
17332828--17332888	26	2.3	26	91	0	95	60	3	4	31	1.34
17332907--17332946	21	1.9	21	84	0	53	57	2	7	32	1.40
17334113--17334147	14	2.4	15	85	9	54	25	5	14	54	1.62
17337519--17338024	251	2.0	251	95	0	904	21	15	18	44	1.86
17340074--17340140	33	1.9	33	82	8	80	49	8	31	10	1.68
17345124--17345213	37	2.4	38	84	1	110	28	43	13	14	1.83
17351531--17351619	29	3.1	29	86	0	124	19	29	15	35	1.93
17356925--17357174	27	9.3	27	83	5	276	43	18	14	23	1.87
17356932--17357174	107	2.3	107	82	5	276	43	19	14	22	1.87
17359587--17359611	12	2.1	12	100	0	50	60	0	0	40	0.97
17361667--17361731	22	3.0	22	77	4	60	43	18	21	16	1.88
17361721--17361928	32	6.5	32	81	5	233	39	22	19	19	1.93
17361721--17361928	96	2.2	97	83	6	264	39	22	19	19	1.93
17361737--17361927	64	3.0	64	87	1	285	38	21	19	19	1.94
17361969--17362027	27	2.2	27	82	11	68	30	23	27	18	1.98
17362097--17362154	24	2.4	24	88	5	82	48	24	6	20	1.74
17362111--17362183	24	3.0	24	80	11	69	45	24	6	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17362216--17362423	27	7.8	26	83	8	233	26	22	16	33	1.96
17362204--17362448	54	4.6	53	81	3	253	26	22	17	34	1.95
17362199--17362448	81	3.1	81	85	2	303	26	21	17	34	1.95
17362389--17362712	27	12.1	27	78	5	327	25	17	18	39	1.91
17365564--17365601	17	2.2	17	86	9	51	36	28	5	28	1.79
17367360--17367407	15	3.1	15	77	11	51	54	0	10	35	1.35
17368129--17368167	16	2.4	17	87	8	55	15	2	17	64	1.41
17372467--17372511	22	2.0	22	87	8	65	28	0	20	51	1.48
17373647--17373675	15	1.9	15	100	0	58	68	6	10	13	1.37
17375723--17375759	18	2.1	18	89	0	56	45	10	8	35	1.69
17383097--17383134	19	2.0	19	100	0	76	36	5	10	47	1.61
17389608--17389700	31	3.0	31	100	0	186	35	32	6	25	1.82
17389697--17389884	51	3.7	51	82	4	213	30	27	15	26	1.96
17398878--17398922	20	2.2	20	85	14	58	53	13	4	28	1.59
17400908--17400964	12	4.8	12	73	16	55	10	15	3	70	1.29
17401990--17402024	13	2.6	13	90	4	52	8	5	2	82	0.91
17403220--17403261	20	2.1	20	86	8	59	57	11	0	30	1.35
17404425--17404467	18	2.5	16	82	14	50	34	13	4	46	1.65
17404931--17404969	19	2.1	19	85	4	53	38	15	15	30	1.88
17407101--17407130	15	2.0	15	93	0	51	73	10	6	10	1.25
17410486--17410831	173	2.0	173	96	1	640	37	14	13	34	1.85
17412286--17412319	15	2.1	16	89	10	52	55	5	0	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17413304--17413345	18	2.4	18	88	11	61	57	0	0	42	0.99
17419288--17419355	31	2.2	31	94	0	118	32	8	13	45	1.74
17419300--17419368	31	2.2	31	94	0	120	31	10	14	43	1.79
17419359--17419386	14	2.0	14	100	0	56	28	14	21	35	1.92
17419324--17419417	45	2.1	45	93	0	161	30	11	17	40	1.85
17419369--17419723	31	11.6	31	86	2	457	29	9	17	43	1.80
17419300--17419441	76	1.9	76	93	0	248	31	10	15	42	1.81
17419369--17419723	92	3.9	92	85	1	480	29	9	17	43	1.80
17419369--17419723	123	2.9	123	88	1	516	29	9	17	43	1.80
17423972--17424016	20	2.2	20	96	0	81	37	20	22	20	1.94
17424956--17425002	12	4.0	12	77	5	51	4	23	0	72	1.02
17424962--17424997	16	2.2	16	90	5	54	5	22	0	72	1.05
17428577--17428621	20	2.2	20	96	0	81	37	20	22	20	1.94
17429029--17429147	27	4.4	27	86	2	168	32	16	15	34	1.91
17429029--17429147	54	2.2	54	90	3	186	32	16	15	34	1.91
17433353--17433391	20	2.0	20	94	0	69	53	2	0	43	1.14
17433344--17433450	37	2.9	35	72	16	92	51	2	1	43	1.27
17435724--17435753	15	2.0	15	93	0	51	66	10	6	16	1.41
17447810--17447849	9	4.4	9	90	0	62	17	0	27	55	1.43
17447810--17447849	18	2.2	18	100	0	80	17	0	27	55	1.43
17447963--17448404	124	3.5	125	88	3	604	28	17	24	30	1.97
17451556--17452194	43	14.0	42	78	15	366	23	0	32	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17451672--17452193	49	11.1	47	84	8	553	21	0	34	42	1.60
17451875--17451921	14	3.4	14	76	5	51	25	0	31	42	1.55
17451706--17452193	141	3.4	141	85	9	590	21	0	35	42	1.59
17451556--17452194	190	3.5	188	81	9	668	23	0	32	43	1.59
17451556--17452194	22	28.0	22	75	11	495	23	0	32	43	1.59
17452117--17452165	15	3.5	15	71	25	52	22	0	34	42	1.54
17452016--17452171	27	6.1	28	72	17	92	20	1	35	42	1.61
17452128--17452171	14	3.2	14	78	15	56	20	0	38	40	1.53
17452261--17452292	8	4.0	8	95	0	55	12	0	28	59	1.34
17452281--17452419	22	6.2	22	75	12	131	20	0	36	43	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172