genome.fa.s22.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  30  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7262711--7262831	41	3.0	41	85	4	129	27	19	25	27	1.99
7263173--7263238	18	3.3	18	67	25	51	34	4	15	45	1.66
7263172--7263255	25	3.8	24	72	24	76	32	4	16	46	1.68
7263169--7263255	43	2.0	44	90	4	140	33	4	17	44	1.69
7264827--7264866	3	14.3	3	80	15	50	70	0	0	30	0.88
7264826--7264882	18	3.4	18	79	16	68	68	1	0	29	1.00
7265087--7265125	19	2.0	21	85	10	55	69	5	10	15	1.34
7265141--7265225	44	1.9	45	92	7	147	27	20	7	45	1.76
7265322--7265379	22	2.6	22	84	7	73	43	17	3	36	1.66
7265335--7265453	21	5.8	19	86	7	112	39	15	8	36	1.77
7265369--7265452	21	4.1	21	90	6	145	39	13	9	38	1.77
7265351--7265453	40	2.7	38	80	14	129	37	15	8	37	1.79
7265737--7265988	128	2.0	129	81	2	301	28	21	19	30	1.97
7265881--7265988	44	2.5	44	86	3	128	30	22	19	27	1.98
7266429--7266999	88	6.5	88	93	0	926	20	23	27	28	1.99
7270053--7270116	32	2.0	32	100	0	128	25	25	15	34	1.95
7272241--7272357	51	2.3	52	81	7	134	57	5	5	30	1.47
7272616--7272677	3	22.0	3	78	18	71	69	0	0	30	0.89
7272615--7272677	18	3.4	18	83	14	83	68	0	0	31	0.90
7272619--7272677	17	3.7	15	75	18	57	69	0	0	30	0.89
7272947--7273033	43	2.0	44	95	2	158	18	18	6	56	1.63
7273128--7273185	22	2.7	21	76	10	53	43	18	1	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7273164--7273237	19	3.8	19	85	7	94	36	14	9	39	1.79
7273175--7273237	21	3.1	20	86	9	92	38	12	9	39	1.76
7274987--7275023	18	2.0	18	89	5	56	62	2	0	35	1.10
7274987--7275031	18	2.3	18	85	11	54	60	2	2	35	1.22
7275251--7275309	16	3.4	16	80	15	64	35	0	3	61	1.13
7290417--7290444	12	2.3	12	100	0	56	14	17	25	42	1.87
7293493--7293530	20	1.9	20	88	0	58	55	0	0	44	0.99
7297273--7297331	26	2.2	25	78	21	59	64	6	1	27	1.28
7298768--7298813	25	1.9	25	82	8	60	45	2	0	52	1.13
7301532--7301578	23	2.0	23	100	0	94	51	19	12	17	1.77
7301971--7302084	43	2.7	41	80	10	124	31	23	16	28	1.96
7302394--7302438	21	2.1	21	87	0	63	4	42	22	31	1.73
7306069--7306121	27	2.0	27	85	7	72	54	22	0	22	1.45
7306794--7307183	114	3.4	113	80	6	414	26	27	22	23	1.99
7321546--7321732	93	2.0	93	95	1	340	41	18	6	33	1.78
7325539--7325591	24	2.2	24	100	0	106	43	16	15	24	1.87
7326580--7326609	5	5.8	5	92	7	51	83	0	16	0	0.65
7328677--7328716	19	2.1	19	100	0	80	32	15	10	42	1.79
7333798--7333856	29	2.1	28	84	15	77	40	0	5	54	1.23
7337123--7337397	141	2.0	140	83	7	351	29	6	29	34	1.83
7341643--7341678	17	2.1	17	100	0	72	50	11	5	33	1.61
7349239--7349310	36	2.0	37	83	8	94	59	4	2	33	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7349250--7349313	18	3.5	18	79	14	69	60	4	3	31	1.32
7357600--7357708	34	3.3	34	64	14	93	33	19	6	40	1.77
7357631--7357725	22	4.4	22	64	15	63	37	16	6	38	1.74
7357598--7357728	64	2.0	64	100	0	262	36	19	6	38	1.76
7364048--7364084	6	6.2	6	100	0	74	67	0	32	0	0.91
7379120--7379158	20	2.0	21	85	10	55	25	5	5	64	1.35
7379348--7379438	40	2.3	38	79	9	92	35	20	21	21	1.96
7379495--7379817	41	7.9	41	83	6	395	18	22	27	30	1.98
7379494--7379817	82	4.0	82	86	4	449	18	22	28	30	1.98
7379497--7379817	123	2.6	124	87	3	461	19	22	27	30	1.98
7380558--7380596	7	5.6	7	90	0	51	20	2	48	28	1.62
7380895--7380932	14	2.7	15	88	8	53	26	0	31	42	1.56
7380894--7380932	15	2.7	14	80	7	51	25	0	30	43	1.55
7380944--7380999	21	2.6	22	74	2	69	21	0	41	37	1.53
7380948--7380975	14	2.0	14	100	0	56	14	0	50	35	1.43
7381554--7381584	15	2.1	15	100	0	62	58	0	0	41	0.98
7381566--7381917	136	2.5	138	89	7	518	46	11	13	29	1.77
7381810--7381999	104	1.8	104	87	6	285	50	10	10	28	1.70
7382071--7382119	26	2.0	24	84	11	64	69	6	0	24	1.11
7385698--7386151	23	19.9	23	73	14	228	29	6	23	40	1.79
7385700--7386122	137	3.1	137	94	1	751	29	6	23	40	1.79
7385700--7386151	46	9.9	45	73	12	329	29	6	23	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7387042--7387203	84	1.9	86	88	5	249	22	14	31	30	1.94
7387043--7387203	43	3.8	42	79	6	164	22	14	31	30	1.94
7387274--7387317	22	2.0	22	90	0	70	40	27	18	13	1.88
7392913--7392976	9	7.2	9	91	3	94	37	28	10	23	1.89
7394621--7395021	220	1.8	219	88	1	615	34	19	15	30	1.93
7394621--7395027	111	3.7	111	88	2	588	34	19	14	30	1.92
7395160--7395267	4	26.8	4	75	12	96	72	3	3	20	1.16
7395160--7395284	8	14.9	8	71	11	54	72	4	3	20	1.16
7395202--7395284	16	4.8	17	76	17	64	73	2	2	21	1.06
7397311--7397530	45	4.9	45	75	12	177	23	22	23	30	1.99
7397311--7397499	89	2.1	89	88	3	274	22	23	22	30	1.99
7397340--7397538	89	2.2	89	85	3	283	23	22	23	31	1.99
7397563--7398273	44	16.2	44	68	12	350	25	24	23	26	2.00
7397607--7398505	88	10.2	88	86	0	1124	26	24	22	27	2.00
7399726--7399764	13	2.7	15	80	19	55	0	25	0	74	0.82
7404008--7404418	111	3.8	109	88	2	576	35	19	15	30	1.92
7404560--7404650	4	22.8	4	73	16	73	70	4	4	20	1.23
7404603--7404667	29	2.2	29	86	5	87	72	3	3	21	1.12
7404560--7404660	23	4.2	25	76	16	99	70	3	3	21	1.21
7406027--7406088	31	2.0	31	100	0	124	41	16	9	32	1.80
7416203--7416251	20	2.5	20	80	6	55	40	10	14	34	1.79
7428784--7428842	31	1.9	31	92	0	100	16	22	11	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7429295--7429370	28	2.7	28	83	4	91	27	18	18	35	1.94
7429324--7429442	28	4.2	28	72	10	91	31	16	15	36	1.91
7430629--7431857	625	2.0	625	96	0	2242	37	12	16	32	1.87
7457861--7457898	20	1.9	19	94	5	67	26	0	2	71	1.00
7457859--7457898	10	4.0	10	81	12	55	27	0	2	70	1.01
7458084--7458145	33	2.0	30	81	9	70	37	17	14	30	1.90
7461057--7461127	9	7.3	10	78	10	67	60	0	4	35	1.16
7461055--7461156	9	10.9	9	71	15	64	57	0	2	38	1.20
7461055--7461156	19	5.4	18	74	16	75	57	0	2	38	1.20
7461053--7461132	38	2.1	37	84	11	101	55	0	3	41	1.18
7463517--7463558	21	2.0	21	86	4	59	30	28	11	28	1.92
7465691--7466259	284	2.0	285	91	1	917	36	11	22	30	1.90
7472405--7472442	16	2.4	16	87	12	60	26	0	0	73	0.83
7472558--7472584	2	13.5	2	100	0	54	51	0	0	48	1.00
7478645--7478697	25	2.0	27	82	7	65	33	1	0	64	1.05
7482101--7482132	9	3.6	9	91	0	55	40	0	3	56	1.15
7482439--7482472	15	2.3	15	94	0	59	17	2	14	64	1.40
7482489--7482522	17	2.0	17	88	11	52	32	8	0	58	1.29
7482888--7482957	36	2.0	35	83	8	88	5	31	0	62	1.18
7488793--7488834	15	2.7	16	82	14	52	45	0	2	52	1.13
7488784--7488825	15	2.9	15	82	10	52	47	0	0	52	1.00
7488937--7488971	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7488768--7489084	157	2.0	157	96	0	589	47	5	3	44	1.41
7489207--7489242	16	2.2	16	95	0	63	38	33	0	27	1.57
7490995--7491036	21	2.0	20	86	4	57	35	11	23	28	1.91
7493956--7494046	37	2.5	36	82	8	112	40	32	13	13	1.83
7498989--7499061	35	2.1	35	100	0	146	34	5	10	49	1.61
7499666--7499723	25	2.3	24	80	11	64	31	0	5	63	1.16
7501548--7501578	10	3.1	10	95	0	53	35	0	0	64	0.94
7502852--7502912	17	3.5	17	72	16	61	27	11	14	45	1.80
7502841--7502911	36	2.0	36	91	0	115	25	11	14	49	1.76
7506135--7506186	25	2.1	25	81	0	59	7	17	25	50	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172