genome.fa.s22.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  153  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44310332--44310375	2	22.0	2	100	0	88	0	50	0	50	1.00
44318189--44318233	22	2.0	22	82	0	54	33	11	4	51	1.58
44322244--44322286	22	2.0	22	90	4	70	16	6	0	76	0.99
44331446--44331544	41	2.4	41	89	0	153	28	20	20	31	1.97
44337238--44337288	9	5.6	9	76	19	52	45	0	1	52	1.12
44338331--44338365	3	11.7	3	93	0	61	37	0	0	62	0.95
44344903--44344949	22	2.0	23	84	16	60	36	10	0	53	1.36
44351584--44351637	28	1.9	28	92	0	90	44	7	7	40	1.60
44366046--44366094	20	2.5	19	80	6	62	65	6	14	14	1.45
44367139--44367537	196	2.0	197	99	0	791	41	13	9	35	1.77
44368456--44368482	8	3.4	8	100	0	54	44	0	0	55	0.99
44369136--44369172	2	18.5	2	100	0	74	0	48	0	51	1.00
44369223--44369262	14	2.9	14	84	0	53	32	7	17	42	1.77
44369231--44369297	35	1.9	35	84	3	91	29	10	14	44	1.79
44369246--44369285	20	2.0	20	85	0	53	25	12	15	47	1.80
44407424--44407460	12	2.9	13	88	8	58	67	0	2	29	1.04
44407418--44407483	33	2.0	33	88	5	98	62	1	3	33	1.20
44407555--44407579	3	8.3	3	100	0	50	32	0	0	68	0.90
44409099--44409269	86	2.0	85	94	1	297	35	18	16	30	1.93
44416111--44416156	3	15.7	3	86	4	58	60	0	6	32	1.22
44416111--44416152	12	3.5	12	90	0	66	59	0	7	33	1.25
44432853--44432880	6	4.7	6	100	0	56	35	0	50	14	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44433348--44433381	18	2.0	17	88	11	52	55	17	0	26	1.42
44446273--44446329	20	2.9	20	76	2	62	47	12	1	38	1.51
44447491--44447529	19	2.1	19	85	0	51	38	2	0	58	1.12
44457583--44457625	20	2.1	21	86	4	61	41	0	0	58	0.98
44467006--44467039	9	3.8	9	92	0	59	38	29	8	23	1.85
44475114--44475250	74	1.9	74	84	3	188	32	15	20	32	1.94
44475539--44475569	3	10.3	3	100	0	62	0	0	32	67	0.91
44477215--44477291	14	5.0	15	71	20	52	42	14	9	33	1.77
44477231--44477270	20	2.0	20	90	0	62	50	12	10	27	1.72
44477219--44477285	34	1.9	35	90	3	109	46	13	8	31	1.74
44498820--44498917	49	2.0	49	100	0	196	36	14	20	28	1.92
44499669--44499867	99	2.0	99	97	0	371	26	15	18	39	1.90
44503298--44503356	14	4.1	15	74	20	54	30	0	1	67	1.00
44503331--44503384	19	2.7	20	85	5	65	27	0	3	68	1.06
44531682--44531731	5	10.0	5	100	0	100	60	0	0	40	0.97
44533205--44533234	6	4.8	6	95	4	51	66	0	0	33	0.92
44536763--44536821	30	1.9	31	93	3	102	57	0	6	35	1.25
44538862--44538928	34	1.9	35	90	3	109	22	8	4	64	1.41
44538862--44538917	18	3.2	18	73	16	64	25	7	1	66	1.27
44543804--44543838	2	17.5	2	93	0	61	0	0	45	54	0.99
44553433--44553472	21	1.9	21	84	0	53	42	0	5	52	1.23
44563209--44563294	41	2.1	41	97	0	163	46	12	12	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44568160--44568226	25	2.6	25	85	2	89	31	0	2	65	1.07
44568150--44568205	7	7.6	7	75	16	51	23	0	0	76	0.78
44570113--44570152	19	2.1	19	90	0	62	50	0	5	45	1.23
44570356--44570381	10	2.6	10	100	0	52	50	11	0	38	1.39
44571771--44571799	14	2.1	14	100	0	58	51	13	13	20	1.75
44573920--44573978	31	1.9	31	89	6	93	40	0	13	45	1.43
44574259--44574307	24	2.1	23	92	3	80	28	6	18	46	1.72
44575427--44575481	26	2.1	26	83	6	67	29	0	9	61	1.26
44578115--44578173	31	1.9	31	90	10	95	57	5	5	32	1.42
44581365--44581421	29	2.0	29	82	6	71	35	1	10	52	1.46
44584489--44584599	37	3.0	37	91	0	177	37	13	20	27	1.91
44592094--44592241	37	4.0	37	94	0	251	38	13	20	27	1.90
44599710--44599856	37	4.0	37	92	1	242	38	13	19	27	1.90
44628220--44628367	37	4.0	37	88	6	219	39	13	20	27	1.90
44628220--44628367	75	2.0	73	88	5	217	39	13	20	27	1.90
44630520--44630576	31	1.9	28	82	10	69	31	15	21	31	1.94
44631000--44631131	40	3.1	40	77	18	108	34	15	21	28	1.94
44631025--44631131	40	2.5	41	80	16	137	31	16	20	30	1.95
44631099--44631297	50	4.1	50	77	18	224	37	14	22	26	1.92
44631261--44631350	35	2.5	37	91	8	152	36	18	18	25	1.94
44632634--44632826	49	3.9	49	95	0	323	23	15	30	31	1.95
44635918--44636283	46	7.6	46	80	13	323	34	13	22	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44635918--44636283	98	3.7	97	84	10	501	34	13	22	29	1.93
44635932--44636283	195	1.8	196	92	0	607	34	13	22	28	1.93
44636247--44636354	37	3.0	37	89	5	168	35	16	22	25	1.95
44641840--44641946	40	2.7	41	82	4	139	37	20	21	20	1.95
44642013--44642203	41	4.7	40	87	5	242	18	21	26	32	1.97
44643270--44643372	21	5.0	20	70	13	59	21	0	40	36	1.60
44643302--44643338	14	2.6	14	91	0	56	24	0	40	35	1.55
44646731--44646893	43	3.8	43	89	1	229	22	16	31	29	1.96
44646729--44646893	86	1.9	86	89	0	258	22	16	30	30	1.96
44646965--44647008	22	2.0	22	90	0	70	43	25	20	11	1.85
44656592--44656616	10	2.5	10	100	0	50	48	28	0	24	1.52
44658204--44658362	41	3.9	41	80	5	178	24	22	25	28	1.99
44658803--44658837	14	2.5	14	90	0	52	25	0	45	28	1.54
44659210--44659403	43	4.6	43	76	5	171	26	14	29	28	1.95
44659235--44659402	86	2.0	86	85	0	228	26	14	29	29	1.95
44659240--44659425	86	2.2	86	81	1	212	24	17	28	29	1.97
44659468--44659512	22	2.1	21	91	4	72	42	28	17	11	1.84
44665303--44665340	15	2.5	15	91	0	58	57	0	10	31	1.32
44674119--44674164	19	2.4	18	82	10	56	23	19	8	47	1.77
44676982--44677025	7	6.3	7	82	17	56	65	0	18	15	1.27
44676982--44677025	21	2.1	21	87	8	63	65	0	18	15	1.27
44678339--44678571	92	2.5	92	89	2	369	31	20	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44678339--44678573	44	5.1	44	73	10	177	31	20	23	24	1.98
44678513--44678609	44	2.2	46	87	5	137	35	19	18	26	1.95
44678603--44679004	132	3.0	132	90	2	619	29	18	24	27	1.98
44679862--44680059	46	4.6	45	83	13	256	27	23	14	34	1.94
44679951--44680023	36	2.0	36	94	0	128	28	21	12	36	1.90
44679905--44680059	82	1.9	82	94	0	274	28	22	13	35	1.92
44700504--44700565	29	2.1	29	100	0	124	27	16	16	40	1.89
44705918--44705944	6	4.5	6	100	0	54	33	0	51	14	1.43
44707388--44707447	30	2.0	30	100	0	120	56	6	6	30	1.51
44710234--44710294	28	2.2	28	85	5	81	45	0	3	50	1.17
44710324--44710624	54	5.1	56	67	22	163	42	2	3	51	1.33
44710372--44710580	66	3.3	63	68	21	179	41	3	5	50	1.41
44710335--44710627	120	2.4	120	93	2	491	42	2	4	50	1.35
44710460--44710621	15	10.9	15	66	21	58	43	1	3	50	1.30
44710589--44710630	15	2.7	16	82	14	52	45	0	2	52	1.13
44710564--44710880	157	2.0	157	95	0	571	48	4	2	44	1.38
44710733--44710767	18	2.0	17	88	5	52	45	0	0	54	0.99
44710914--44711018	44	2.5	40	74	15	104	30	29	5	34	1.81
44711000--44711053	16	3.4	16	86	0	72	31	29	0	38	1.57
44713106--44713132	14	1.9	14	100	0	54	29	22	0	48	1.51
44713120--44713313	84	2.3	84	97	0	361	31	19	13	35	1.91
44717263--44717289	6	4.5	6	100	0	54	33	0	51	14	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44723301--44723373	33	2.2	33	83	11	89	27	6	17	47	1.73
44743922--44744011	39	2.2	41	90	3	139	53	5	2	38	1.37
44746906--44746950	22	2.0	23	82	4	56	15	4	35	44	1.67
44749660--44749772	11	10.3	11	73	6	59	66	7	2	23	1.31
44754785--44754837	24	2.3	23	84	12	72	62	5	3	28	1.35
44754823--44754868	19	2.5	20	76	23	55	58	4	2	34	1.30
44757384--44757413	14	2.1	14	93	0	51	0	36	3	60	1.14
44773380--44773404	9	2.8	9	100	0	50	24	0	8	68	1.16
44773394--44773442	23	2.1	23	88	7	73	44	0	6	48	1.27
44775726--44775768	19	2.2	20	84	12	63	32	18	0	48	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172