genome.fa.s22.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  45  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11963856--11963889	3	11.3	3	87	0	50	61	2	2	32	1.26
11965322--11965682	99	3.6	99	79	5	406	22	20	24	32	1.98
11965322--11965669	50	7.0	50	69	4	236	22	20	24	32	1.97
11965322--11965694	199	1.9	201	84	4	513	22	20	24	31	1.98
11965743--11966585	142	5.9	142	93	0	1391	28	21	17	33	1.96
11966547--11966646	44	2.3	43	79	6	103	22	26	20	32	1.98
11968067--11968114	7	7.0	7	85	4	71	12	18	0	68	1.20
11968067--11968114	20	2.3	20	89	3	69	12	18	0	68	1.20
11968936--11968970	7	4.7	7	89	10	52	0	17	0	82	0.66
11968931--11968970	15	2.7	15	84	11	55	0	22	0	77	0.77
11968936--11968983	16	3.1	15	82	11	53	6	12	0	81	0.87
11969023--11969078	18	3.1	17	82	10	67	10	0	10	78	0.96
11969023--11969062	12	3.3	12	85	0	53	10	0	12	77	0.99
11969016--11969078	12	5.2	12	73	21	51	9	1	9	79	1.01
11973318--11973358	3	13.7	3	89	0	64	63	2	2	31	1.20
11992155--11992309	50	3.1	50	59	15	113	43	14	7	34	1.74
11992159--11992356	99	2.0	99	98	0	387	40	14	10	34	1.80
11998496--11998534	10	4.1	9	83	9	51	41	2	2	53	1.28
11999185--11999238	25	2.2	25	89	0	81	46	16	9	27	1.78
12000221--12000275	25	2.2	25	81	12	60	49	5	1	43	1.36
12006134--12006189	28	2.0	28	82	0	67	30	17	21	30	1.96
12006547--12006799	27	9.4	27	84	5	253	18	18	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12010149--12010239	46	2.0	46	97	0	173	28	26	20	24	1.99
12012671--12012800	28	4.6	28	92	0	215	26	21	25	26	1.99
12012922--12012971	26	2.0	25	92	4	82	36	26	24	14	1.93
12013147--12013288	27	5.3	27	84	1	187	16	19	20	43	1.88
12013146--12013288	54	2.6	54	88	2	207	16	19	20	43	1.88
12027367--12027392	6	4.3	6	100	0	52	30	0	0	69	0.89
12036498--12036597	20	5.0	19	65	10	56	15	19	13	53	1.73
12037017--12037097	20	4.1	20	64	19	53	14	18	12	54	1.71
12037194--12037265	20	3.5	21	67	12	51	15	15	13	55	1.69
12037298--12037367	20	3.5	19	70	14	52	14	17	18	50	1.79
12037195--12037423	40	5.6	39	67	14	99	15	16	14	53	1.74
12037533--12037572	20	2.0	20	95	0	71	5	15	22	57	1.57
12037785--12037828	20	2.2	20	91	0	70	13	18	18	50	1.79
12037794--12037836	20	2.2	20	91	0	68	11	16	18	53	1.72
12042294--12042324	9	3.4	9	90	0	53	25	12	22	38	1.90
12042377--12042413	9	4.1	9	85	0	56	48	13	8	29	1.71
12042464--12042519	29	2.0	28	89	10	87	19	41	0	39	1.52
12042640--12042699	30	2.0	31	86	3	86	20	40	0	40	1.52
12048558--12048590	17	1.9	17	100	0	66	33	18	0	48	1.48
12049404--12049593	77	2.5	77	77	8	199	35	18	14	31	1.91
12054870--12055030	74	2.2	75	82	9	188	42	4	18	34	1.72
12059408--12059440	16	2.0	17	88	5	50	45	0	18	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12070749--12070814	27	2.5	28	90	2	75	25	22	37	13	1.91
12071141--12071478	27	15.0	21	68	24	133	31	0	12	55	1.44
12071164--12071219	19	2.9	19	86	0	76	32	0	14	53	1.41
12071258--12071558	49	6.2	49	85	4	416	31	0	14	53	1.45
12071260--12071505	97	2.5	98	95	1	449	32	0	13	54	1.45
12071427--12071484	22	2.9	19	71	14	53	34	1	12	51	1.49
12071546--12071667	60	2.0	60	85	3	165	31	0	13	53	1.46
12071701--12071782	38	2.2	38	97	0	155	54	3	2	39	1.31
12071819--12071860	16	2.7	15	85	7	57	38	2	2	57	1.25
12075101--12075182	27	3.0	27	92	0	137	21	40	21	15	1.91
12078405--12078520	60	1.9	62	89	3	182	47	1	2	48	1.26
12078992--12079034	19	2.3	19	88	8	61	37	0	4	58	1.19
12081050--12081138	25	3.6	25	95	0	160	22	24	20	32	1.98
12081049--12081189	50	2.8	50	83	4	160	23	25	19	31	1.98
12091099--12091151	24	2.2	24	83	6	63	66	0	13	20	1.25
12093714--12093775	25	2.4	25	82	15	74	30	4	1	62	1.25
12093724--12093763	17	2.3	18	87	8	57	35	2	0	62	1.09
12095227--12095260	16	2.1	16	94	0	59	20	11	20	47	1.81
12097553--12097861	100	3.1	99	85	3	397	30	19	24	25	1.98
12097603--12097777	50	3.5	50	64	3	127	30	19	24	25	1.98
12097857--12098369	44	11.9	44	71	8	261	30	20	22	26	1.98
12097857--12098277	128	3.3	128	82	6	487	31	20	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12097858--12098319	257	1.8	256	82	5	601	30	20	22	26	1.98
12098081--12098414	44	7.7	44	74	8	224	30	20	22	26	1.98
12099707--12099803	3	32.7	3	77	13	85	31	2	3	62	1.22
12099918--12099966	17	2.8	18	84	12	66	32	4	0	63	1.13
12099889--12099969	25	3.2	24	73	23	69	25	4	1	67	1.18
12099907--12100008	25	4.0	24	73	11	64	30	5	3	59	1.39
12101193--12101384	98	1.9	98	79	7	210	35	13	21	29	1.91
12114892--12114934	19	2.2	20	87	4	61	69	0	0	30	0.88
12115247--12115288	18	2.4	18	84	7	52	30	0	0	69	0.89
12122111--12122162	18	2.8	19	77	11	54	55	1	3	38	1.29
12122540--12122721	82	2.2	82	80	8	194	18	15	25	39	1.91
12123342--12123423	7	10.9	7	72	14	65	18	0	50	31	1.47
12123340--12123423	22	3.7	21	83	12	105	19	0	48	32	1.49
12124193--12124223	4	7.8	4	100	0	62	77	0	0	22	0.77
12124895--12124938	24	1.9	22	90	9	70	36	43	0	20	1.52
12126020--12126077	26	2.2	26	90	0	89	41	15	3	39	1.64
12127996--12128200	9	23.2	9	69	15	106	47	17	2	32	1.61
12128026--12128080	25	2.2	25	86	0	74	47	18	1	32	1.59
12133715--12133762	21	2.3	21	92	0	78	31	18	47	2	1.60
12134239--12134489	42	6.0	42	85	5	301	24	21	21	32	1.98
12134196--12134501	84	3.6	83	83	7	323	25	21	21	31	1.98
12134195--12134501	43	7.2	42	81	8	320	25	21	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12134961--12135013	17	3.0	17	78	8	52	30	0	3	66	1.10
12135731--12135757	5	5.4	5	100	0	54	59	22	0	18	1.38
12136031--12136086	22	2.5	22	88	0	76	39	16	17	26	1.91
12138236--12138482	50	4.8	50	79	8	214	29	21	26	23	1.99
12140509--12140542	11	3.1	11	91	8	52	64	14	8	11	1.49
12152749--12152815	28	2.4	28	79	2	71	22	22	19	35	1.96
12162479--12162511	17	2.0	17	88	5	50	30	0	12	57	1.35
12163052--12163095	11	4.0	11	82	11	54	27	25	0	47	1.52
12163053--12163099	4	12.8	4	78	17	57	25	25	0	48	1.51
12163053--12163087	15	2.3	15	90	0	52	25	25	0	48	1.51
12163066--12163109	7	6.0	7	83	5	52	25	20	2	52	1.58
12163066--12163109	22	2.0	22	86	8	63	25	20	2	52	1.58
12163418--12163458	20	2.0	20	95	0	73	24	7	14	53	1.66
12163967--12164006	19	2.1	19	90	9	64	30	10	10	50	1.69
12170664--12170795	63	2.1	63	85	2	176	24	28	21	25	1.99
12172200--12172452	77	3.3	78	87	3	343	38	3	16	40	1.68
12172601--12172699	40	2.5	40	80	11	121	31	18	18	32	1.95
12172848--12173020	35	5.2	35	66	29	110	30	8	17	43	1.79
12172838--12173130	66	4.5	66	91	0	432	30	8	18	43	1.79
12172875--12173141	31	8.2	32	73	18	221	29	8	18	43	1.79
12176304--12176371	16	4.2	16	88	0	109	27	1	33	36	1.66
12176607--12176641	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12176727--12176761	18	2.0	17	88	5	52	54	0	0	45	0.99
12176590--12176837	120	2.1	120	100	0	496	48	5	2	43	1.38
12187980--12188043	21	3.0	21	68	8	56	42	3	3	51	1.33
12191918--12191992	25	2.9	27	80	9	77	65	0	5	29	1.15
12191970--12192037	17	3.8	18	74	12	59	66	1	2	29	1.15
12192044--12192078	16	2.1	17	89	5	54	62	2	8	25	1.38
12192453--12192495	22	2.0	22	82	13	54	23	2	6	67	1.27
12192671--12192720	20	2.5	21	77	9	59	36	2	2	60	1.20
12192673--12192720	19	2.4	20	75	6	53	35	2	2	60	1.20
12193198--12193252	12	4.8	12	75	22	55	52	1	0	45	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172