genome.fa.s22.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  108  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31098086--31098161	39	1.9	38	82	12	91	56	3	0	39	1.18
31099156--31099188	16	1.9	18	88	11	52	54	0	6	39	1.25
31114323--31114376	10	5.6	10	78	10	51	64	0	1	33	1.04
31114324--31114375	9	5.6	9	77	13	52	63	0	1	34	1.06
31114325--31114375	18	2.7	19	85	14	70	62	0	1	35	1.06
31120909--31120953	4	11.2	4	100	0	90	24	0	24	51	1.49
31132504--31132529	13	2.0	13	100	0	52	30	0	7	61	1.24
31133606--31133648	22	2.0	20	91	8	68	39	0	0	60	0.97
31145490--31146081	44	13.7	44	72	11	354	26	22	20	30	1.98
31145486--31145995	46	11.7	42	72	11	235	27	22	20	30	1.98
31145614--31146080	87	5.4	87	72	11	363	26	21	19	31	1.98
31145524--31146081	174	3.2	174	93	2	912	26	22	19	31	1.98
31146041--31146439	88	4.6	87	84	6	382	23	22	22	31	1.99
31146114--31146249	43	3.2	43	64	21	104	22	19	25	32	1.98
31146243--31146381	44	3.2	44	67	8	138	28	23	21	26	1.99
31146104--31146439	88	3.9	88	88	3	439	24	22	22	30	1.99
31146287--31146425	44	3.2	44	66	15	124	24	21	25	28	1.99
31146104--31146439	174	1.9	173	83	4	433	24	22	22	30	1.99
31154924--31154971	25	1.9	25	100	0	96	39	16	12	31	1.86
31160322--31160354	15	2.1	16	88	5	50	15	0	21	63	1.30
31161235--31161268	17	2.0	17	94	0	59	44	50	0	5	1.26
31165874--31165907	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31168521--31168549	3	9.7	3	100	0	58	68	0	0	31	0.89
31169657--31169855	110	1.8	106	89	4	308	33	20	15	30	1.93
31170750--31170791	22	1.9	21	85	9	57	59	4	2	33	1.31
31176339--31176598	18	13.9	18	72	19	144	45	10	12	31	1.76
31176468--31176526	21	2.8	21	84	5	66	42	8	6	42	1.61
31176610--31176676	18	3.8	18	70	5	57	37	11	14	35	1.84
31176620--31176686	34	1.9	34	87	3	98	32	11	14	40	1.83
31176617--31176675	17	3.4	17	72	11	57	38	13	15	32	1.86
31176739--31176786	17	2.7	18	76	23	57	41	10	16	31	1.82
31177370--31177424	24	2.3	24	93	0	101	0	25	9	65	1.22
31177371--31177436	11	5.6	11	77	10	60	0	22	7	69	1.13
31177987--31178088	30	3.4	29	83	5	132	45	3	21	29	1.70
31178105--31178131	8	3.4	8	100	0	54	44	0	11	44	1.39
31178174--31178579	196	2.1	196	90	1	627	38	8	17	34	1.81
31180497--31180550	19	2.8	19	77	5	65	37	3	5	53	1.42
31180597--31180621	13	1.9	13	100	0	50	76	8	0	16	1.02
31180632--31180664	10	3.4	10	83	8	50	63	3	0	33	1.10
31180631--31180691	19	3.3	18	81	6	68	65	3	0	31	1.09
31180646--31180815	94	1.9	87	87	8	250	60	5	2	31	1.34
31190188--31190247	32	1.9	31	83	10	77	48	3	0	48	1.18
31191507--31191540	16	2.2	16	89	5	52	73	5	5	14	1.21
31191681--31191714	18	2.0	18	88	11	54	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31199685--31199743	29	2.1	28	81	12	68	33	5	5	55	1.43
31203259--31203310	26	1.9	28	84	7	72	53	13	13	19	1.72
31203664--31203698	17	1.9	19	88	11	56	20	2	11	65	1.37
31203844--31203876	11	3.1	11	86	4	50	69	0	0	30	0.88
31204158--31204184	8	3.4	8	100	0	54	66	0	0	33	0.92
31209154--31209268	57	2.0	57	91	0	185	30	17	12	40	1.86
31209287--31209803	125	4.1	125	86	4	628	28	16	16	38	1.91
31209857--31209963	33	3.4	32	76	8	105	43	12	0	42	1.48
31209988--31210093	33	3.1	34	83	4	142	46	21	0	32	1.52
31209982--31210085	34	3.1	33	84	2	136	45	23	0	31	1.53
31216475--31216549	34	2.2	33	84	9	98	25	29	1	44	1.63
31216475--31216551	22	3.5	22	81	18	97	25	28	1	44	1.62
31216475--31216551	11	6.9	11	74	21	72	25	28	1	44	1.62
31216513--31216610	51	1.9	51	87	4	144	26	24	3	45	1.67
31223096--31223161	33	2.0	33	96	0	123	37	19	27	15	1.92
31227055--31227140	10	8.8	10	73	8	70	61	2	1	34	1.16
31227055--31227138	29	2.9	28	79	8	80	61	2	1	34	1.16
31227093--31227126	11	3.0	11	91	4	50	67	0	2	29	1.05
31227052--31227149	30	3.3	29	79	8	90	64	3	2	30	1.20
31238315--31238357	21	2.0	22	86	9	61	37	0	4	58	1.19
31243461--31243491	16	2.0	16	93	6	55	12	25	16	45	1.83
31245552--31245584	2	16.5	2	100	0	66	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31253084--31253131	23	2.0	23	84	11	62	62	2	6	29	1.31
31253226--31253271	20	2.3	20	85	7	58	60	17	0	21	1.35
31253235--31253273	20	2.0	20	94	0	69	56	17	0	25	1.41
31255928--31255996	28	2.3	30	85	7	88	53	1	0	44	1.09
31255944--31256008	28	2.3	28	78	5	69	53	0	0	46	1.00
31258127--31258161	17	2.1	17	89	5	54	45	0	8	45	1.34
31259304--31259344	16	2.5	17	84	8	57	2	14	51	31	1.56
31259387--31259465	23	3.3	23	87	7	106	8	18	36	35	1.83
31259387--31259478	46	2.0	47	85	8	125	8	17	34	39	1.80
31259387--31259479	23	3.9	24	85	5	102	8	17	35	38	1.80
31259582--31259617	14	2.4	16	86	13	51	0	22	0	77	0.76
31260326--31260415	31	3.0	30	83	3	110	46	5	23	24	1.73
31260327--31260419	29	3.1	30	84	3	125	46	5	23	24	1.73
31261005--31261457	76	6.0	76	87	1	577	33	18	18	29	1.95
31272897--31272948	17	2.9	16	78	16	50	50	0	25	25	1.50
31273040--31273070	16	1.9	16	100	0	62	48	0	19	32	1.49
31273321--31273357	9	4.1	9	92	0	65	29	10	13	45	1.77
31274880--31274927	17	2.9	16	78	3	51	4	16	45	33	1.67
31275011--31275055	23	2.0	23	90	0	72	15	17	31	35	1.92
31275034--31275082	14	3.5	14	97	0	89	12	18	34	34	1.88
31275778--31275874	29	3.3	30	84	7	128	48	5	21	24	1.70
31278085--31278111	14	1.9	14	100	0	54	0	7	7	85	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31281280--31281305	13	2.0	13	100	0	52	15	0	15	69	1.20
31290401--31290439	14	2.7	15	80	4	53	48	0	0	51	1.00
31296230--31296254	6	4.2	6	100	0	50	52	0	16	32	1.44
31297019--31297057	6	6.5	6	93	0	69	35	0	12	51	1.40
31299952--31299976	6	4.2	6	100	0	50	52	0	16	32	1.44
31304312--31304379	21	3.3	20	69	15	50	63	0	0	36	0.95
31304354--31304437	17	4.7	17	69	16	62	60	0	1	38	1.04
31304319--31304417	38	2.5	39	88	6	146	63	0	1	35	1.01
31304320--31304430	48	2.3	50	78	12	124	63	0	0	35	1.00
31304342--31304370	11	2.6	11	100	0	58	55	0	0	44	0.99
31315074--31315100	6	4.5	6	100	0	54	85	0	0	14	0.61
31319397--31319673	136	2.0	136	95	1	502	30	22	14	32	1.93
31324308--31324336	15	1.9	15	100	0	58	27	13	31	27	1.94
31324311--31324345	15	2.3	15	90	0	52	34	14	25	25	1.94
31330624--31330953	42	7.5	42	81	11	335	36	24	16	23	1.94
31330624--31330945	177	1.8	178	87	6	492	35	24	16	23	1.95
31330778--31330974	84	2.3	84	84	6	229	36	24	15	23	1.94
31341982--31342057	37	2.1	37	100	0	152	42	10	7	39	1.69
31343895--31343941	21	2.2	22	88	3	69	36	2	4	57	1.30
31347127--31347177	3	17.0	3	91	0	84	62	0	3	33	1.13
31347721--31347753	12	2.8	12	86	4	50	84	3	12	0	0.72
31348829--31348872	20	2.2	20	83	0	52	34	9	6	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31349309--31349354	22	2.2	22	88	7	69	36	0	2	60	1.09
31349479--31349908	87	4.9	87	86	2	533	31	14	11	42	1.81
31349935--31350154	88	2.5	88	82	2	257	45	8	11	34	1.72
31349935--31350196	88	2.9	88	80	7	228	45	10	12	32	1.76
31350321--31350363	20	2.1	21	86	4	61	65	4	2	27	1.25
31358654--31358685	14	2.2	15	94	5	57	46	3	0	50	1.17
31359927--31359989	34	1.9	32	84	12	83	38	0	3	58	1.14
31359916--31359967	17	3.0	17	80	2	59	40	3	1	53	1.30
31361389--31361429	17	2.3	18	87	8	57	21	2	4	70	1.18
31370363--31370403	21	2.0	21	85	0	55	29	2	0	68	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172