genome.fa.s22.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  169  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50122899--50122961	17	3.5	17	69	12	54	49	12	3	34	1.57
50122890--50122964	37	2.0	37	94	0	132	45	14	4	36	1.64
50123096--50123174	39	2.0	39	97	0	149	17	2	29	50	1.59
50123155--50123179	13	1.9	13	100	0	50	12	0	48	40	1.40
50128019--50128065	23	2.0	23	83	4	58	61	0	6	31	1.21
50128889--50128933	24	1.9	23	81	4	54	48	4	2	44	1.35
50132427--50132461	17	2.1	17	94	0	61	68	0	0	31	0.90
50139555--50139625	32	2.2	32	97	2	135	53	5	8	32	1.54
50139730--50139792	30	2.1	31	93	3	110	68	6	4	20	1.31
50139783--50139841	27	2.1	28	81	9	68	45	1	1	50	1.21
50139793--50139856	32	2.0	31	84	3	83	40	0	3	56	1.15
50143307--50143337	15	2.1	15	93	0	53	22	0	3	74	0.96
50151312--50152433	268	4.0	275	82	11	1203	45	18	12	23	1.84
50153185--50153219	17	2.1	17	100	0	70	40	17	20	22	1.92
50157493--50157531	11	3.5	11	82	6	51	35	2	0	61	1.10
50158102--50158145	23	2.0	23	90	4	72	31	0	15	52	1.44
50158924--50158965	11	3.8	11	90	9	68	76	4	0	19	0.96
50158924--50158966	5	8.0	5	85	14	59	76	4	0	18	0.95
50158924--50158977	11	4.9	11	84	8	56	77	7	0	14	0.97
50158964--50158992	5	5.8	5	100	0	58	82	17	0	0	0.66
50171810--50171858	20	2.5	20	86	6	64	59	0	2	38	1.09
50171829--50171862	9	3.6	9	88	11	50	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50182383--50182434	26	2.0	26	96	0	95	50	17	15	17	1.79
50184075--50184108	17	2.0	17	94	0	59	44	50	0	5	1.26
50188714--50188747	17	2.0	17	94	0	59	44	50	0	5	1.26
50199672--50199927	136	1.9	139	87	4	385	26	15	22	35	1.94
50217114--50217172	31	2.0	29	83	6	73	22	13	20	44	1.86
50239514--50239578	25	2.5	26	80	14	71	38	23	20	18	1.93
50239702--50239754	25	2.2	24	83	10	63	37	20	22	18	1.94
50245924--50245966	23	1.9	22	85	4	59	25	11	13	48	1.77
50247002--50247042	19	2.2	19	100	0	82	21	12	9	56	1.65
50264506--50264713	54	3.9	54	87	0	292	39	23	12	24	1.90
50270674--50270755	42	2.0	42	95	0	146	30	17	15	36	1.91
50279648--50279680	6	5.5	6	100	0	66	18	33	48	0	1.48
50284879--50285013	68	2.0	68	100	0	270	50	8	8	32	1.63
50287204--50287406	107	1.9	107	82	0	253	42	10	11	34	1.77
50288208--50288287	24	3.3	24	75	3	72	18	52	7	21	1.70
50288304--50288397	6	15.7	6	77	0	71	27	52	11	8	1.67
50288304--50288384	36	2.2	36	84	0	108	27	51	11	9	1.68
50288304--50288392	24	3.7	24	81	0	97	28	51	11	8	1.67
50289638--50289678	18	2.5	17	80	15	50	12	9	4	73	1.24
50290498--50290601	9	11.2	9	66	13	50	24	60	3	11	1.47
50290550--50290644	42	2.3	42	81	0	109	24	57	6	11	1.56
50290663--50290795	24	5.5	24	70	13	103	22	60	9	8	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50290672--50290809	48	2.9	47	76	6	134	26	58	7	7	1.52
50301945--50302008	23	2.8	22	74	6	65	54	1	0	43	1.09
50302193--50302230	6	6.3	6	96	0	58	44	0	0	55	0.99
50304215--50304260	20	2.5	19	80	13	60	63	2	0	34	1.07
50310748--50311043	157	1.9	157	100	0	592	31	12	16	39	1.86
50313020--50313052	18	1.9	18	88	11	52	33	0	12	54	1.37
50329386--50329412	12	2.2	12	100	0	54	40	0	0	59	0.98
50329386--50329438	20	2.9	18	86	8	63	43	1	1	52	1.23
50331756--50331837	43	1.9	43	97	0	155	36	4	36	21	1.75
50337267--50337303	18	2.1	18	89	0	56	32	5	13	48	1.65
50343415--50343472	19	3.1	19	75	12	57	41	0	0	58	0.98
50344245--50344274	7	4.3	7	100	0	60	16	0	0	83	0.65
50357752--50357795	11	4.1	10	86	13	61	22	29	0	47	1.51
50360341--50360626	124	2.3	125	91	2	459	28	20	19	31	1.97
50364925--50364976	24	2.1	26	85	7	72	55	1	1	40	1.22
50364936--50364985	26	2.0	24	84	7	64	56	4	0	40	1.18
50368593--50368621	4	7.2	4	100	0	58	48	27	0	24	1.51
50378163--50378281	60	2.0	60	91	0	193	53	12	0	32	1.44
50378412--50378465	27	2.0	27	81	0	63	20	33	29	16	1.95
50378548--50378599	21	2.5	20	72	9	50	61	0	1	36	1.07
50378990--50379032	3	14.3	3	100	0	86	32	0	0	67	0.91
50397532--50397612	36	2.2	36	88	0	126	9	17	38	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50406694--50406738	22	2.0	22	100	0	90	44	0	13	42	1.43
50406917--50407042	47	2.6	49	71	11	114	44	2	2	50	1.27
50407140--50407191	15	3.6	15	80	12	56	44	0	1	53	1.11
50407148--50407335	61	3.1	61	68	19	183	42	2	4	50	1.36
50407015--50407435	122	3.4	122	94	3	697	42	2	4	49	1.38
50407262--50407313	15	3.6	15	80	12	56	44	0	1	53	1.11
50407384--50407418	18	2.0	17	88	5	52	45	0	0	54	0.99
50407566--50407670	44	2.5	40	76	15	113	31	29	4	34	1.78
50407564--50407673	45	2.6	44	81	8	131	31	29	5	33	1.80
50414467--50414815	125	2.7	130	76	8	347	28	10	11	48	1.73
50414467--50414882	131	3.2	128	76	9	380	27	11	11	48	1.74
50414664--50415088	216	2.0	217	82	7	533	25	12	12	49	1.76
50414884--50415887	127	7.9	126	81	5	1058	26	11	15	46	1.80
50414539--50415205	345	1.9	344	85	3	903	26	11	12	48	1.76
50414884--50415887	256	3.9	254	82	5	1120	26	11	15	46	1.80
50418017--50419202	199	5.9	199	80	5	1252	28	19	20	31	1.97
50418182--50419198	399	2.6	393	83	6	1260	28	19	20	31	1.97
50424797--50424841	22	2.0	22	86	0	63	42	6	4	46	1.50
50426606--50426693	40	2.1	41	85	6	124	37	3	32	26	1.73
50437480--50437518	3	13.0	3	100	0	78	33	0	0	66	0.92
50445528--50445558	16	1.9	16	93	0	53	35	0	9	54	1.33
50454009--50454086	39	2.0	38	95	2	138	39	7	6	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50456305--50456358	3	19.0	3	74	11	51	64	3	1	29	1.21
50460298--50460327	12	2.5	12	100	0	60	13	13	53	20	1.72
50462307--50462340	17	2.0	17	88	0	50	52	0	0	47	1.00
50466397--50466438	3	14.3	3	83	14	52	33	0	2	64	1.07
50466539--50466577	13	3.1	12	85	10	51	41	0	2	56	1.13
50466930--50466958	10	2.9	10	100	0	58	48	10	0	41	1.37
50470849--50471035	41	4.7	41	79	9	206	26	17	22	33	1.96
50470851--50471107	40	6.5	40	73	9	197	27	17	22	32	1.96
50470850--50471102	118	2.1	118	88	1	382	26	16	23	33	1.96
50474117--50474146	12	2.5	12	100	0	60	13	13	53	20	1.72
50480642--50480784	50	2.8	50	82	1	187	20	29	23	27	1.99
50480879--50480908	13	2.3	13	94	0	51	50	13	3	33	1.58
50481122--50481178	30	1.9	30	85	3	80	31	24	1	42	1.65
50483100--50483133	15	2.4	14	90	5	50	47	0	2	50	1.16
50483334--50483365	5	6.6	5	96	3	57	37	0	0	62	0.95
50483335--50483380	17	2.8	17	83	6	51	36	0	6	56	1.25
50494062--50494086	13	1.9	13	100	0	50	28	0	0	72	0.86
50497468--50497703	41	5.8	41	97	0	445	26	28	20	24	1.99
50500826--50501261	51	8.6	50	76	6	360	31	26	15	26	1.96
50500878--50501257	151	2.5	153	84	4	457	31	26	15	26	1.96
50500871--50501257	102	3.8	102	85	3	408	31	26	15	26	1.96
50503002--50503088	21	4.1	21	79	7	104	36	22	21	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50503002--50503087	23	4.0	23	77	11	101	37	23	22	17	1.94
50503002--50503088	44	2.0	41	84	6	111	36	22	21	18	1.95
50504750--50504844	40	2.4	40	83	0	145	12	14	28	44	1.82
50505538--50505566	12	2.3	13	94	5	51	17	0	20	62	1.33
50505801--50505825	12	2.1	12	100	0	50	24	0	0	76	0.80
50506092--50506141	25	2.0	25	84	7	66	28	0	4	68	1.08
50508364--50508415	22	2.3	23	93	6	97	30	26	21	21	1.98
50508635--50508678	18	2.5	17	82	17	54	45	20	0	34	1.51
50516757--50516942	40	4.7	40	84	5	207	24	20	26	27	1.99
50516810--50516975	80	2.1	79	82	5	192	26	19	25	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172