genome.fa.s22.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  125  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35448075--35448293	41	5.1	41	70	15	156	33	0	12	53	1.43
35448268--35448321	27	2.0	27	88	0	81	33	1	12	51	1.51
35448380--35448506	27	5.1	26	77	18	137	52	13	1	32	1.50
35448377--35448735	19	19.3	19	66	22	160	53	12	0	32	1.45
35448370--35448599	49	4.8	49	79	13	273	53	13	1	32	1.47
35448401--35448547	41	3.4	41	76	18	154	53	13	1	31	1.49
35448401--35448711	89	3.5	88	81	11	354	54	13	0	32	1.44
35448548--35448733	22	9.0	21	71	20	124	54	12	0	32	1.38
35448548--35448733	41	4.5	41	73	17	170	54	12	0	32	1.38
35448496--35448599	52	2.0	52	88	3	156	50	12	0	35	1.47
35448883--35448915	3	11.3	3	87	6	50	0	36	0	63	0.95
35448883--35448924	14	3.0	14	86	10	59	0	40	0	59	0.97
35448886--35448935	14	3.6	13	81	10	55	0	40	0	60	0.97
35450015--35450089	34	2.1	36	87	7	109	57	9	18	14	1.64
35455772--35455812	21	2.0	21	90	0	64	19	29	21	29	1.98
35460222--35460273	18	2.9	17	77	8	59	46	9	34	9	1.69
35468121--35468160	19	2.2	18	90	4	62	15	27	5	52	1.63
35473035--35473116	42	1.9	43	90	2	130	31	12	15	40	1.85
35476631--35476663	17	1.9	17	100	0	66	42	9	0	48	1.35
35481621--35481655	14	2.4	15	85	4	54	37	8	0	54	1.31
35491934--35491995	31	2.0	31	93	0	106	38	9	4	46	1.58
35495576--35495639	3	22.0	3	76	12	62	62	0	35	1	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35500063--35500143	20	4.2	19	75	12	76	64	3	1	30	1.19
35500068--35500144	10	7.8	10	68	18	54	66	2	1	29	1.13
35503606--35503645	21	1.9	21	89	0	62	47	7	15	30	1.72
35504788--35504964	88	2.0	88	98	0	345	30	9	21	38	1.85
35518378--35518408	15	2.1	15	93	0	53	35	29	6	29	1.82
35523444--35523555	44	2.5	46	80	11	140	32	20	25	22	1.98
35523422--35523555	44	3.0	45	77	10	139	31	21	23	23	1.98
35525753--35525780	4	7.0	4	100	0	56	50	0	0	50	1.00
35526331--35526891	205	2.7	205	92	0	924	36	15	15	32	1.89
35542819--35542851	15	2.2	15	89	10	50	63	0	0	36	0.95
35543256--35543304	9	5.3	9	75	4	53	28	0	2	69	1.00
35544842--35544868	8	3.4	8	100	0	54	55	0	0	44	0.99
35552100--35552126	11	2.5	11	100	0	54	29	25	0	44	1.54
35553462--35553531	30	2.4	30	95	2	124	45	2	11	40	1.55
35553462--35553542	30	2.7	30	88	9	114	46	2	11	39	1.53
35555255--35555794	220	2.5	220	92	1	904	25	24	21	28	1.99
35556748--35556785	5	7.8	5	83	16	53	0	15	0	84	0.63
35556748--35556786	14	2.7	15	96	4	71	0	15	0	84	0.62
35556747--35556799	25	2.2	25	86	3	72	1	13	1	83	0.82
35556747--35556786	7	5.6	7	83	16	55	0	15	0	85	0.61
35560530--35560579	24	2.1	23	85	3	64	62	14	8	16	1.54
35561848--35561896	20	2.3	21	80	16	57	57	2	6	34	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35561900--35562033	37	3.6	36	84	6	153	45	4	11	38	1.60
35561883--35562033	75	2.0	75	83	12	193	47	3	10	38	1.57
35565679--35565796	59	2.0	59	96	0	218	35	11	23	28	1.91
35567867--35567959	39	2.5	37	80	7	98	27	29	22	20	1.98
35568092--35568183	37	2.5	37	82	8	116	32	22	1	43	1.61
35568092--35568184	36	2.5	35	81	13	107	32	23	1	43	1.61
35568646--35568690	9	5.1	9	83	5	56	0	26	2	71	0.98
35569054--35569092	12	3.4	11	80	13	51	46	2	0	51	1.14
35578058--35578107	25	2.0	25	88	0	73	42	6	6	46	1.53
35586497--35586666	25	6.7	26	73	14	106	34	20	24	20	1.96
35586538--35586666	52	2.6	49	76	12	127	37	20	24	18	1.94
35588912--35588983	36	2.0	36	83	2	92	29	26	9	34	1.88
35594647--35594671	7	3.6	7	100	0	50	72	0	28	0	0.86
35603417--35604749	201	6.7	201	78	4	1213	30	21	18	30	1.97
35603461--35604612	591	1.9	591	80	2	1339	30	21	19	29	1.97
35605139--35605389	99	2.5	99	87	1	342	24	28	19	28	1.98
35605351--35605471	33	3.7	33	76	12	115	23	28	23	24	1.99
35605344--35605471	66	1.9	66	84	3	168	24	28	21	25	1.99
35612216--35612255	17	2.4	17	87	8	55	35	2	2	60	1.24
35616656--35616733	9	8.7	9	92	0	111	43	24	7	24	1.80
35616776--35616819	20	2.2	20	84	8	54	25	0	6	68	1.14
35618585--35618617	12	2.8	12	86	4	50	54	0	6	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35618773--35618814	17	2.5	17	88	3	68	52	0	7	40	1.29
35618931--35618974	17	2.6	17	79	10	54	45	6	4	43	1.51
35627923--35627984	33	1.9	32	87	9	90	30	3	11	54	1.51
35635295--35635406	55	2.0	55	98	0	215	36	7	9	46	1.65
35635305--35635420	55	2.1	55	88	1	171	39	6	12	41	1.68
35636868--35636922	23	2.3	24	75	9	58	38	16	10	34	1.84
35647516--35647801	138	2.1	138	91	0	464	46	6	6	40	1.55
35655708--35655800	24	3.8	25	75	21	81	35	20	27	16	1.94
35658479--35658577	41	2.4	41	91	1	155	24	25	11	39	1.88
35661047--35661084	16	2.4	16	90	0	58	47	2	7	42	1.46
35661099--35661237	58	2.4	59	96	2	262	39	4	8	47	1.54
35661219--35661246	9	3.1	9	100	0	56	32	0	10	57	1.33
35661343--35661389	24	1.9	25	87	12	71	61	2	0	36	1.08
35661993--35662100	45	2.3	46	88	4	155	48	4	6	40	1.50
35666141--35666176	17	2.1	17	94	0	63	30	0	11	58	1.33
35667450--35667515	15	4.5	15	85	11	100	53	9	0	37	1.33
35667986--35668057	26	2.8	26	72	4	65	41	23	6	27	1.80
35675373--35675414	21	2.0	21	90	0	66	35	0	4	59	1.19
35675425--35675460	18	1.9	19	88	5	56	36	2	11	50	1.53
35675451--35675491	20	2.0	20	90	0	64	39	0	4	56	1.21
35683954--35684054	41	2.5	41	90	4	152	28	25	19	25	1.99
35700617--35700677	22	2.7	23	85	5	72	36	3	18	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35703905--35703932	13	2.2	13	100	0	56	71	0	14	14	1.15
35718971--35719054	42	2.0	42	100	0	168	59	7	0	33	1.25
35718982--35719053	23	3.3	23	69	15	80	56	8	0	34	1.29
35719169--35719199	11	2.8	11	90	0	53	32	0	0	67	0.91
35719315--35719383	30	2.3	30	92	2	102	55	17	5	21	1.63
35720940--35721063	66	1.9	62	87	6	176	36	4	11	47	1.61
35725722--35725801	30	2.6	31	86	9	112	25	13	26	35	1.93
35725790--35725851	29	2.2	28	85	2	79	22	17	24	35	1.95
35725797--35725869	28	2.6	29	80	2	85	20	17	24	36	1.94
35727742--35727850	55	2.0	56	96	1	202	41	11	18	28	1.86
35734398--35734444	3	15.7	3	100	0	94	68	0	0	31	0.90
35740265--35740304	16	2.6	17	81	18	52	47	22	0	30	1.52
35741119--35741147	14	2.0	15	93	6	51	6	10	6	75	1.17
35746421--35746447	7	3.9	7	100	0	54	85	0	14	0	0.61
35747289--35747336	16	3.1	16	77	14	55	79	0	10	10	0.95
35747282--35747337	25	2.2	25	87	9	78	78	0	10	10	0.96
35748658--35749722	100	10.6	100	85	0	1369	33	23	19	24	1.97
35750486--35750543	24	2.4	23	81	13	64	17	6	3	72	1.21
35761397--35761429	11	2.9	12	86	13	52	33	0	0	66	0.92
35761643--35761701	22	2.7	22	75	0	64	61	6	11	20	1.53
35763423--35763466	16	2.5	17	85	14	63	27	2	0	70	0.99
35764127--35764166	17	2.3	18	91	4	64	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35764175--35764252	32	2.5	31	81	4	102	32	14	16	37	1.89
35767694--35767755	18	3.4	18	80	13	65	50	0	0	50	1.00
35767743--35767793	20	2.5	20	79	17	61	60	9	0	29	1.28
35768414--35768694	91	3.1	91	84	3	352	31	11	15	41	1.82
35775757--35775817	18	3.3	18	68	17	52	26	14	24	34	1.94
35775758--35775824	20	3.5	20	70	15	68	25	16	23	34	1.95
35777270--35777311	21	2.0	22	81	13	52	35	7	16	40	1.76
35777332--35777588	131	1.9	133	82	4	324	35	7	14	43	1.72
35777549--35777590	22	2.0	22	85	4	59	42	7	21	28	1.79
35786565--35786594	12	2.5	12	88	0	51	0	10	0	90	0.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172