genome.fa.s22.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  164  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48282683--48282930	99	2.4	103	88	6	353	20	28	24	26	1.99
48282684--48282930	50	4.8	50	85	6	302	20	28	24	26	1.99
48283025--48283056	13	2.5	13	94	0	55	56	12	0	31	1.37
48283267--48283324	30	1.9	30	89	0	89	31	24	3	41	1.71
48296518--48296568	10	5.4	9	76	15	50	27	0	1	70	0.98
48296514--48296569	19	3.0	19	77	12	53	30	0	1	67	1.01
48296507--48296551	21	2.1	21	84	8	56	31	2	2	64	1.18
48298092--48298588	150	3.3	149	86	5	664	52	8	10	28	1.65
48302906--48302939	6	5.7	6	96	0	59	0	61	0	38	0.96
48305948--48305983	16	2.2	16	100	0	72	19	11	30	38	1.86
48310225--48310251	5	5.4	5	100	0	54	81	0	18	0	0.69
48310225--48310260	15	2.4	15	90	0	54	77	2	16	2	1.00
48311388--48311457	28	2.7	26	87	10	106	51	5	5	37	1.50
48311393--48311454	28	2.2	28	97	0	115	48	6	6	38	1.55
48311449--48311482	16	2.0	18	88	11	54	55	0	5	38	1.24
48316407--48316438	12	2.7	12	90	0	55	25	40	18	15	1.90
48321910--48321968	27	2.2	26	79	8	66	25	1	3	69	1.13
48325585--48325622	9	4.2	9	83	10	51	31	2	0	65	1.06
48335250--48335287	15	2.5	15	86	0	58	13	31	23	31	1.93
48335281--48335329	18	2.9	17	80	14	57	16	42	18	22	1.88
48335358--48335402	15	3.0	15	90	0	63	15	33	22	28	1.95
48335363--48335403	15	2.7	15	92	0	64	17	31	19	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48355157--48355225	26	2.7	26	82	6	79	49	1	8	40	1.43
48369113--48369137	13	1.9	13	100	0	50	44	0	16	40	1.47
48369379--48369432	21	2.5	21	90	3	81	51	5	1	40	1.36
48369614--48369639	13	2.0	13	100	0	52	53	7	7	30	1.57
48380652--48380953	149	2.0	149	98	0	586	23	14	19	42	1.88
48386654--48386797	20	7.1	19	68	17	69	33	4	0	61	1.22
48386684--48386781	41	2.4	40	81	8	117	35	6	1	57	1.31
48390153--48390230	32	2.4	31	89	10	120	48	2	11	37	1.53
48397144--48397200	12	4.8	11	78	18	53	1	24	3	70	1.13
48403144--48403178	5	6.6	5	87	12	52	77	0	0	22	0.78
48411642--48411678	2	19.0	2	94	5	67	48	0	51	0	1.00
48415543--48415587	21	2.1	21	91	0	72	17	24	33	24	1.96
48416218--48416464	123	2.0	123	92	1	415	29	17	27	25	1.98
48418008--48418049	21	2.0	21	81	9	50	38	2	0	59	1.10
48420283--48420344	31	2.0	31	84	3	81	37	12	9	40	1.77
48424272--48424324	14	3.6	14	73	14	52	35	1	3	58	1.27
48438994--48439034	14	2.9	14	85	3	55	60	14	7	17	1.55
48444596--48444645	21	2.8	17	76	23	50	30	0	2	68	1.01
48444861--48445005	58	2.5	59	84	4	177	22	14	10	52	1.72
48449652--48449677	3	8.7	3	100	0	52	69	0	30	0	0.89
48452614--48452653	20	2.1	19	90	4	62	17	5	10	67	1.37
48453889--48453949	26	2.6	22	75	22	61	68	0	1	29	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48453889--48453955	23	2.8	23	73	15	64	67	1	1	29	1.09
48455426--48455455	11	2.7	11	94	0	51	46	0	6	46	1.29
48455464--48455543	10	7.6	10	70	14	54	55	1	3	40	1.26
48459001--48459124	52	2.4	52	81	0	140	24	17	26	31	1.97
48476266--48476321	29	1.9	29	82	13	71	44	7	1	46	1.41
48480594--48480653	27	2.2	27	84	0	75	21	13	18	46	1.83
48480606--48480657	27	1.9	27	96	0	95	25	13	17	44	1.85
48483915--48483954	3	13.0	3	94	5	71	0	32	0	67	0.91
48489188--48489228	21	2.0	21	90	0	64	19	29	21	29	1.98
48501047--48501079	10	3.4	10	83	8	50	57	0	0	42	0.98
48501047--48501087	19	2.2	19	90	0	64	60	0	0	39	0.96
48502916--48502955	20	2.1	19	86	13	55	57	10	5	27	1.52
48513924--48513968	16	3.0	16	76	23	53	46	0	4	48	1.22
48526641--48526691	20	2.5	20	84	6	59	35	0	1	62	1.06
48528540--48528587	17	2.8	17	93	3	78	16	6	33	43	1.73
48538530--48538652	59	2.1	59	92	0	201	52	12	17	17	1.75
48541901--48541940	15	2.6	16	84	8	55	32	0	22	45	1.53
48543818--48543872	29	1.9	29	88	3	85	38	10	16	34	1.84
48544441--48544480	21	1.9	21	85	10	55	62	2	0	35	1.09
48546419--48546479	21	3.0	21	80	4	63	18	26	13	42	1.86
48548550--48548580	2	15.5	2	93	0	53	51	45	0	3	1.17
48548544--48548582	12	3.2	12	88	0	60	53	38	0	7	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48551258--48551563	149	2.1	149	97	0	576	43	7	4	43	1.55
48566716--48566748	15	2.2	15	94	0	57	69	6	24	0	1.10
48572121--48572198	28	2.9	26	76	10	77	33	7	1	57	1.35
48572455--48572480	6	4.3	6	100	0	52	50	15	0	34	1.45
48579067--48579097	11	2.8	11	95	0	53	32	0	25	41	1.56
48580204--48580271	35	2.1	33	84	13	88	41	10	5	42	1.63
48586901--48586978	40	2.0	40	94	0	138	42	2	7	47	1.46
48595361--48595391	3	10.3	3	100	0	62	67	0	0	32	0.91
48596529--48596601	33	2.2	33	82	4	94	41	6	8	43	1.61
48596793--48596835	18	2.5	17	76	3	50	34	0	2	62	1.08
48599413--48599437	12	2.1	12	100	0	50	32	12	32	24	1.91
48600460--48600511	21	2.5	21	84	6	70	30	0	3	65	1.10
48611600--48611628	6	4.8	6	100	0	58	17	34	48	0	1.47
48619146--48619187	20	2.0	22	86	13	61	45	4	0	50	1.23
48630750--48630808	29	2.0	30	93	3	102	35	22	16	25	1.95
48642527--48642585	26	2.3	26	87	0	82	20	15	8	55	1.65
48654362--48654422	17	3.5	17	77	8	70	36	1	1	60	1.16
48655457--48655488	14	2.3	14	94	0	55	65	0	0	34	0.93
48655983--48656021	19	2.1	19	85	9	53	56	0	2	41	1.13
48656214--48656311	31	3.2	30	74	8	90	34	4	10	51	1.55
48657143--48657175	14	2.4	14	94	0	57	48	12	12	27	1.76
48657553--48657584	14	2.1	16	88	11	50	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48657553--48657585	15	2.1	16	88	5	50	69	0	0	30	0.88
48658066--48658126	20	2.9	21	81	16	65	4	44	0	50	1.23
48673944--48673999	22	2.6	21	75	8	58	16	14	7	62	1.52
48701392--48701433	18	2.4	18	80	11	52	64	4	4	26	1.33
48702012--48702077	9	6.8	9	73	20	53	33	3	7	56	1.43
48702085--48702123	19	2.0	20	90	5	62	33	0	0	66	0.92
48704414--48704451	18	2.1	18	90	9	60	73	2	0	23	0.95
48705960--48705990	6	5.0	6	96	4	53	67	0	0	32	0.91
48706684--48706722	2	19.5	2	89	0	60	48	5	0	46	1.24
48710129--48710269	57	2.4	58	84	9	169	29	20	26	22	1.99
48710679--48710883	40	5.1	40	73	8	150	20	17	10	51	1.75
48710760--48710877	60	2.0	60	83	3	148	17	19	10	52	1.73
48710628--48710883	20	12.9	19	69	13	124	19	17	11	51	1.76
48710897--48710954	20	2.9	20	80	10	64	22	15	10	51	1.73
48721518--48721586	27	2.6	27	93	4	113	40	10	1	47	1.46
48721586--48721625	8	4.7	9	84	9	57	85	7	5	2	0.83
48721586--48721625	17	2.4	17	95	0	71	85	7	5	2	0.83
48721669--48721735	27	2.5	27	90	0	98	19	28	35	16	1.93
48721782--48721956	18	9.8	18	66	24	61	65	0	32	1	1.04
48721804--48721860	14	3.6	14	71	24	51	68	0	29	1	1.00
48721782--48721957	38	4.9	37	80	12	190	65	0	32	1	1.04
48721804--48721904	10	10.5	10	70	18	63	64	0	32	1	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48723193--48723230	18	2.1	18	90	0	58	15	44	5	34	1.69
48723196--48723237	18	2.3	18	83	0	57	21	47	2	28	1.63
48724342--48724367	11	2.4	11	100	0	52	50	7	42	0	1.31
48724333--48724389	29	2.0	29	82	6	71	52	5	40	1	1.34
48725016--48725065	3	17.0	3	83	4	66	36	0	2	62	1.07
48726864--48726901	3	12.7	3	94	0	67	63	2	0	34	1.09
48728554--48728615	31	2.0	31	87	6	90	58	0	3	38	1.15
48731001--48731922	117	8.1	117	85	6	1201	27	27	15	30	1.96
48731001--48731922	228	4.0	223	87	4	1186	27	27	15	30	1.96
48740898--48740924	14	1.9	14	100	0	54	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172