genome.fa.s22.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  52  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13904510--13904584	36	2.1	36	100	0	150	34	5	26	33	1.79
13915920--13915952	16	2.0	17	88	5	50	42	6	12	39	1.67
13918030--13918080	25	2.0	25	88	0	75	19	25	25	29	1.99
13920448--13920677	108	2.1	109	84	4	295	22	25	27	24	2.00
13922549--13922573	9	2.8	9	100	0	50	44	0	12	44	1.41
13936040--13936224	39	4.7	39	88	0	208	34	16	31	16	1.92
13936203--13936258	27	2.1	27	89	0	85	35	12	30	21	1.90
13945344--13945383	19	2.1	19	90	9	64	30	10	10	50	1.69
13948273--13948312	19	2.2	19	90	4	64	70	0	7	22	1.12
13958951--13958977	13	2.1	13	100	0	54	22	22	18	37	1.95
13961587--13961678	45	2.0	45	97	0	175	26	23	22	27	2.00
13961592--13961688	45	2.2	45	88	3	142	27	23	23	24	2.00
13965109--13965141	17	2.1	16	88	11	50	45	12	0	42	1.41
13966275--13966376	50	2.0	50	96	3	188	50	14	1	33	1.55
13989239--13989278	13	3.2	13	89	3	55	75	0	0	25	0.81
13991743--13991791	21	2.3	21	85	0	62	32	8	10	48	1.66
14002111--14002253	49	2.9	49	82	2	144	26	27	15	30	1.96
14025482--14025519	19	2.0	19	85	10	51	21	42	0	36	1.53
14034555--14034691	50	2.7	50	80	0	157	21	27	23	27	1.99
14058401--14058486	29	3.0	29	84	0	118	41	30	6	20	1.79
14058864--14058924	26	2.3	26	77	5	70	31	14	6	47	1.70
14063917--14064171	29	8.8	29	76	6	212	36	13	25	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14063947--14064384	58	7.7	58	76	8	330	35	13	27	23	1.93
14063917--14064170	87	2.9	86	81	5	280	36	13	25	24	1.92
14064178--14064372	29	6.7	29	76	2	203	34	12	29	23	1.92
14064045--14064306	135	1.9	135	92	0	434	36	12	27	23	1.90
14064174--14064384	87	2.4	87	95	0	370	35	13	27	23	1.93
14071157--14071235	29	2.7	30	78	4	88	18	24	12	44	1.85
14071334--14071409	31	2.5	32	86	4	95	23	22	10	43	1.84
14078072--14078124	27	2.0	27	100	0	106	67	11	0	20	1.21
14081435--14081672	24	9.4	24	74	11	172	11	31	26	30	1.92
14081435--14081672	75	3.1	75	80	7	225	11	31	26	30	1.92
14081588--14081620	3	11.0	3	100	0	66	0	33	33	33	1.58
14081434--14081674	27	9.4	27	73	15	190	11	31	26	30	1.92
14086923--14086989	34	1.9	35	87	3	100	44	14	8	31	1.76
14095295--14095397	29	3.6	29	77	7	102	40	21	13	24	1.89
14095972--14096022	25	2.0	25	88	0	75	27	19	5	47	1.73
14098375--14098424	20	2.5	19	80	6	64	34	8	22	36	1.83
14103566--14103673	52	2.1	53	89	1	164	28	20	7	43	1.78
14106481--14106532	26	2.0	26	100	0	104	34	15	15	34	1.89
14107648--14107687	13	3.0	13	88	3	53	17	7	0	75	1.03
14109683--14109727	19	2.4	19	82	10	56	31	22	2	44	1.65
14109696--14109735	20	2.0	20	85	9	55	32	20	5	42	1.73
14114048--14114256	104	2.0	104	99	0	409	34	31	11	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14120736--14120793	11	5.4	11	74	17	59	37	3	0	58	1.15
14120727--14120842	31	3.8	31	86	9	175	35	2	0	62	1.09
14120747--14120843	20	4.8	19	71	13	79	35	3	0	61	1.11
14120776--14120843	28	2.9	21	72	25	64	33	2	0	63	1.10
14122903--14123014	29	3.9	29	90	0	152	30	12	21	35	1.90
14122925--14123105	95	1.9	95	81	0	218	27	15	18	38	1.91
14123048--14123147	29	3.4	29	90	0	128	25	15	18	42	1.88
14123098--14123183	29	3.0	29	84	3	93	27	10	19	41	1.84
14123018--14123176	58	2.7	59	75	5	164	27	13	16	41	1.87
14125354--14125395	14	3.1	13	78	21	50	59	4	0	35	1.19
14125362--14125399	16	2.4	16	82	4	51	60	5	0	34	1.19
14125589--14125635	16	2.8	16	78	12	51	59	4	4	31	1.36
14125652--14125704	15	3.5	15	89	0	79	62	7	3	26	1.39
14125652--14125722	30	2.2	32	87	7	101	56	7	8	28	1.55
14125652--14125705	3	18.0	3	80	0	54	61	7	3	27	1.40
14126603--14126652	23	2.1	24	85	10	68	30	0	6	64	1.18
14128678--14128961	51	5.6	50	79	6	281	23	18	27	29	1.98
14128678--14128961	101	2.8	101	92	2	455	23	18	27	29	1.98
14128683--14128961	152	1.8	151	80	5	339	24	18	27	29	1.98
14128990--14129144	33	4.7	32	77	17	140	20	20	28	30	1.98
14130023--14130123	49	2.1	48	83	7	123	28	11	27	31	1.92
14135815--14136082	138	1.9	138	96	0	491	29	8	13	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14136196--14136223	12	2.3	12	100	0	56	35	10	17	35	1.85
14136287--14136355	25	2.7	25	90	2	93	17	15	7	59	1.58
14136298--14136344	15	3.5	15	72	27	59	19	14	6	59	1.56
14143796--14143833	19	1.9	19	94	5	67	15	5	10	68	1.36
14143737--14143886	79	1.9	82	83	4	198	20	11	10	58	1.62
14143948--14144059	56	2.0	56	85	3	154	21	12	15	50	1.76
14143815--14144175	124	2.8	124	82	7	370	20	13	14	51	1.75
14145466--14145528	30	2.1	29	82	11	74	39	0	3	57	1.15
14151482--14151572	41	2.2	41	92	5	148	62	13	5	18	1.49
14154227--14154522	109	2.7	109	89	2	443	29	23	20	26	1.99
14154560--14154641	40	2.0	40	88	0	119	39	25	18	17	1.92
14154646--14154675	9	3.4	9	95	4	53	30	36	10	23	1.87
14161207--14161356	61	2.5	61	80	0	156	31	26	13	29	1.94
14163657--14163700	19	2.3	19	88	0	61	34	15	22	27	1.95
14169822--14169860	18	2.2	18	86	9	53	41	17	2	38	1.64
14180424--14180472	21	2.3	21	82	10	55	24	4	8	63	1.40
14185786--14185854	34	2.0	34	86	5	95	28	28	18	23	1.98
14196371--14196414	21	2.0	22	82	4	54	56	13	6	22	1.61
14198651--14198737	27	3.2	27	81	0	102	10	36	29	22	1.88
14203923--14203956	16	2.1	16	89	10	52	35	20	8	35	1.84
14215995--14216102	41	2.6	40	85	5	153	34	17	27	20	1.95
14225757--14225940	40	4.6	39	84	6	212	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14225757--14225940	78	2.3	80	82	9	216	24	22	27	25	2.00
14230021--14230088	30	2.2	31	84	2	84	27	19	5	47	1.72
14234579--14234612	15	2.3	15	94	0	59	70	0	20	8	1.13
14239353--14239414	28	2.2	28	94	2	108	30	16	9	43	1.80
14241512--14241594	36	2.2	36	82	10	94	49	2	3	44	1.32
14241734--14241776	19	2.4	17	84	7	50	41	2	4	51	1.35
14241734--14241779	17	2.5	19	86	6	60	41	2	6	50	1.40
14242751--14242796	23	2.0	24	83	8	60	50	0	2	47	1.13
14242930--14242994	31	2.1	30	88	8	96	56	0	0	43	0.99
14244066--14244123	27	2.2	27	90	3	91	62	0	0	37	0.96
14248762--14248861	49	2.0	49	98	0	191	48	23	6	23	1.73
14253353--14253480	49	2.6	48	81	6	150	39	20	18	21	1.92
14258004--14258043	18	2.3	18	95	4	73	27	15	32	25	1.95
14266077--14266121	16	2.9	15	78	12	54	33	0	2	64	1.06
14268001--14268033	17	1.9	17	93	0	57	15	12	12	60	1.59
14270967--14271047	26	3.1	26	90	0	117	33	35	12	18	1.88
14270972--14271059	26	3.4	25	87	6	104	36	36	11	15	1.84
14277146--14277187	21	2.0	20	82	13	50	35	2	4	57	1.33
14278933--14278977	12	3.8	12	93	0	72	24	6	13	55	1.62
14281313--14281366	26	2.1	26	100	0	108	40	3	11	44	1.58
14285877--14285924	20	2.5	19	76	6	51	43	4	0	52	1.20
14287218--14287249	13	2.5	13	94	0	55	50	0	3	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14289963--14289987	12	2.1	12	100	0	50	44	32	8	16	1.76
14303998--14304051	21	2.6	21	81	0	72	38	9	29	22	1.85
14304485--14304525	19	2.2	19	86	0	55	21	12	7	58	1.58
14307748--14307772	11	2.3	11	100	0	50	72	8	0	20	1.10
14308696--14308736	21	2.0	21	90	0	64	19	21	17	41	1.90
14309926--14309964	20	1.9	21	94	5	71	35	7	2	53	1.43
14314555--14314613	31	1.9	31	96	0	109	45	3	6	44	1.47
14315574--14315605	15	2.1	15	94	0	55	84	0	15	0	0.63
14318013--14318086	36	2.1	36	100	0	148	8	8	27	56	1.56
14318028--14318087	20	3.2	20	62	33	51	10	6	26	56	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172