genome.fa.s22.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  109  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31370386--31370431	20	2.4	19	82	7	56	15	8	2	73	1.16
31385429--31385467	14	2.8	14	92	0	60	38	7	2	51	1.44
31390418--31390506	44	2.0	44	100	0	178	26	21	6	44	1.77
31397967--31398032	20	3.2	20	76	12	62	51	7	1	39	1.40
31399223--31399269	21	2.4	19	79	13	51	48	2	4	44	1.34
31405883--31405907	4	6.2	4	100	0	50	24	0	0	76	0.80
31407766--31407825	30	2.0	31	86	3	86	20	40	0	40	1.52
31408468--31408519	5	10.2	5	82	12	61	23	25	15	36	1.93
31409092--31409188	42	2.3	42	81	0	113	25	25	29	18	1.98
31410252--31410276	7	3.6	7	100	0	50	60	16	0	24	1.36
31413212--31413250	20	2.0	20	94	0	69	33	12	12	41	1.82
31421006--31421035	14	2.2	14	94	5	53	56	6	0	36	1.26
31438487--31438520	10	3.3	10	84	8	50	61	0	0	38	0.96
31446725--31446760	16	2.2	16	90	0	54	41	13	0	44	1.44
31447442--31447960	212	2.5	207	92	2	833	32	18	18	30	1.95
31447456--31447965	107	4.8	105	84	5	665	32	19	17	30	1.95
31448375--31448435	22	2.7	23	75	9	63	54	0	11	34	1.37
31448580--31448619	7	5.6	7	93	3	62	60	0	10	30	1.30
31448721--31448751	15	2.1	15	93	0	53	58	0	9	32	1.31
31450462--31451291	44	18.8	45	66	9	188	25	24	21	28	1.99
31450375--31451295	132	7.0	132	94	0	1574	25	24	21	29	1.99
31453915--31453978	32	2.0	32	100	0	128	25	25	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31454004--31454134	45	2.9	45	82	6	158	24	22	24	28	2.00
31471049--31471167	44	2.7	43	70	5	103	26	21	25	26	1.99
31471049--31471233	88	2.1	88	86	0	262	28	21	23	26	1.99
31471362--31471524	50	3.3	50	73	0	155	30	20	23	25	1.98
31471359--31471573	100	2.2	100	88	0	322	31	20	22	25	1.98
31471624--31471781	85	1.9	85	85	2	219	29	21	19	29	1.98
31473328--31473358	6	5.2	6	100	0	62	51	32	0	16	1.44
31474433--31474470	18	2.1	19	90	5	60	34	5	0	60	1.19
31474433--31474477	19	2.3	19	85	11	56	33	6	0	60	1.23
31476908--31476947	21	1.9	21	90	10	64	65	0	0	35	0.93
31478250--31478279	3	10.0	3	100	0	60	66	0	0	33	0.92
31479725--31479766	21	2.0	21	100	0	84	23	14	33	28	1.94
31484192--31484265	17	4.1	17	74	17	69	36	1	0	62	1.04
31484210--31484284	11	7.2	11	75	22	56	36	2	0	61	1.10
31484221--31484274	28	1.9	28	81	7	65	35	3	0	61	1.14
31484159--31484291	39	3.4	39	86	6	173	37	2	0	60	1.10
31484243--31484301	21	2.8	21	73	2	64	38	1	0	59	1.08
31492006--31492395	197	2.0	197	84	1	503	37	13	23	25	1.91
31496548--31496626	32	2.5	31	77	6	86	34	12	16	36	1.87
31496634--31496680	19	2.3	21	85	7	62	38	0	0	61	0.96
31503333--31504010	317	2.1	317	84	4	886	26	16	26	29	1.97
31505625--31505672	14	3.4	14	77	5	51	22	2	4	70	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31509389--31509449	28	2.2	27	80	11	70	31	19	31	18	1.96
31509835--31509895	27	2.3	26	82	2	68	52	1	8	37	1.41
31515325--31515363	17	2.2	19	86	9	55	48	5	0	46	1.24
31517915--31517954	14	2.9	13	85	10	53	32	2	17	47	1.61
31517924--31517989	35	1.9	34	84	6	89	33	6	12	48	1.65
31518379--31518406	13	2.2	13	100	0	56	32	0	14	53	1.41
31530581--31530644	31	2.0	32	88	8	96	37	1	0	60	1.06
31530606--31530645	20	2.0	20	95	0	71	32	2	0	65	1.06
31530610--31530653	20	2.2	20	83	0	52	29	2	6	61	1.34
31534384--31534503	32	3.8	32	81	9	138	40	11	8	39	1.72
31535281--31535345	32	2.0	32	96	0	121	27	30	15	26	1.96
31535292--31535349	16	3.4	18	72	18	61	27	29	17	25	1.97
31536882--31536940	11	5.6	11	74	9	52	35	0	32	32	1.58
31540725--31540801	37	2.1	37	80	9	86	40	3	2	53	1.33
31550131--31550199	31	2.3	31	89	2	104	50	5	18	24	1.69
31551856--31551885	16	1.9	16	93	6	53	80	0	6	13	0.91
31552155--31552224	3	24.3	3	73	13	58	58	1	7	32	1.34
31552197--31552224	11	2.5	11	100	0	56	71	0	0	28	0.86
31557996--31558022	11	2.5	11	100	0	54	77	0	0	22	0.76
31558155--31558187	15	2.3	14	94	5	57	78	6	0	15	0.93
31561683--31561710	4	7.0	4	100	0	56	50	25	0	25	1.50
31563675--31563727	28	2.1	27	83	16	69	64	5	3	26	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31566315--31566362	26	1.9	26	83	8	64	47	4	12	35	1.60
31566494--31566533	18	2.2	18	86	8	55	45	0	10	45	1.37
31566507--31566548	18	2.3	18	84	8	50	47	0	9	42	1.36
31566680--31566728	24	2.0	24	84	0	62	46	2	10	40	1.49
31569136--31569178	20	2.4	16	82	17	50	48	0	0	51	1.00
31569139--31569231	24	4.4	21	70	16	68	38	0	5	55	1.23
31569174--31569233	20	3.0	20	70	0	57	31	0	8	60	1.27
31571338--31571377	18	2.2	18	86	0	53	85	2	0	12	0.71
31573099--31573133	12	2.8	12	86	4	52	2	14	0	82	0.77
31577494--31577529	6	6.0	6	100	0	72	66	0	16	16	1.25
31579227--31579266	21	2.0	21	85	14	57	40	5	12	42	1.64
31579813--31579871	24	2.5	24	88	0	82	18	27	16	37	1.93
31579835--31579899	24	2.6	26	83	9	82	18	24	18	38	1.93
31580846--31580930	42	2.0	42	100	0	170	25	18	9	45	1.79
31597905--31597960	28	2.0	29	82	3	69	53	1	1	42	1.21
31598715--31598743	3	10.0	3	92	7	51	34	0	0	65	0.93
31598894--31598953	24	2.4	25	84	15	72	41	0	28	30	1.56
31599097--31599192	39	2.5	39	80	6	108	20	23	28	27	1.99
31599930--31599954	12	2.1	12	100	0	50	84	0	8	8	0.79
31609961--31610290	46	7.6	44	73	12	204	31	21	20	25	1.98
31611917--31611963	3	15.7	3	81	16	53	25	2	2	70	1.10
31612502--31612532	16	1.9	16	93	0	53	35	6	3	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31617366--31617409	22	2.1	21	84	16	56	68	0	4	27	1.09
31624306--31624349	19	2.3	20	88	7	65	27	22	6	43	1.78
31629751--31630125	189	2.0	189	90	0	588	33	18	20	27	1.96
31630461--31630491	9	3.4	9	90	0	53	25	12	22	38	1.90
31633070--31633249	50	3.5	50	80	4	171	27	22	27	21	1.99
31633510--31633548	12	3.2	12	85	0	51	51	5	23	20	1.67
31635292--31636283	501	2.0	500	90	1	1551	33	15	22	27	1.95
31637223--31637730	44	11.1	46	75	11	234	32	17	20	30	1.95
31637223--31637731	95	5.5	87	86	3	257	32	17	20	30	1.95
31637407--31637694	51	5.9	51	78	12	318	33	15	19	31	1.93
31637275--31637731	95	4.9	95	86	1	559	32	17	19	30	1.95
31637172--31637729	139	4.0	133	75	11	469	33	17	19	30	1.95
31639092--31639119	12	2.3	12	100	0	56	21	0	0	78	0.75
31639176--31639230	3	18.7	3	81	3	58	27	3	5	63	1.33
31644093--31644132	16	2.5	16	91	0	62	47	2	7	42	1.45
31644135--31644250	59	2.0	59	93	1	198	40	5	9	44	1.59
31644509--31644574	31	2.2	30	91	5	107	46	9	21	22	1.79
31657364--31657404	21	2.0	21	90	0	64	29	21	29	19	1.98
31660044--31660111	21	3.1	23	77	12	63	48	5	2	42	1.42
31661699--31661741	18	2.4	18	88	3	61	39	0	6	53	1.28
31661759--31661819	31	2.0	31	86	0	86	49	8	6	36	1.59
31671825--31671865	20	2.0	20	95	0	73	51	7	0	41	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31679442--31679499	22	2.6	23	75	10	57	20	17	17	44	1.86
31687204--31687250	22	2.3	20	82	13	60	65	0	2	31	1.04
31687206--31687252	21	2.2	22	88	3	69	70	0	2	27	0.99
31690451--31690647	52	3.8	52	90	2	326	47	5	9	37	1.59
31690601--31690634	13	2.7	13	90	4	52	47	5	8	38	1.59
31690662--31690714	13	4.1	13	80	9	54	52	3	0	43	1.19
31690662--31690714	26	2.0	26	82	7	63	52	3	0	43	1.19
31697187--31697221	19	1.9	17	88	11	52	65	11	2	20	1.37
31704161--31704240	27	3.0	27	98	0	151	20	12	7	60	1.56
31704309--31704362	27	1.9	28	88	7	83	48	9	3	38	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172