genome.fa.s22.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  28  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6742469--6742520	21	2.5	21	75	3	52	65	0	3	30	1.10
6743344--6743402	31	1.9	31	89	0	91	42	3	10	44	1.55
6744056--6744112	28	1.9	31	83	16	77	63	1	1	33	1.15
6748896--6748931	18	2.0	18	94	0	63	33	19	11	36	1.87
6753995--6754044	20	2.6	19	93	3	82	56	12	0	32	1.36
6757683--6757882	109	1.9	106	94	3	355	37	7	15	40	1.74
6762400--6762446	23	2.0	23	100	0	94	40	21	12	25	1.89
6773091--6773147	15	3.8	15	92	0	96	12	12	12	63	1.53
6773080--6773144	30	2.2	30	86	5	87	12	13	13	60	1.60
6773610--6773670	29	2.1	28	82	8	70	39	11	19	29	1.87
6773789--6773851	32	2.0	30	84	6	81	20	0	23	55	1.43
6773853--6773934	29	2.8	29	85	5	103	36	4	25	32	1.77
6783543--6783597	25	2.2	25	96	0	101	21	25	14	38	1.92
6785733--6785863	67	2.0	66	92	1	217	25	33	20	19	1.97
6785995--6786132	57	2.3	60	85	9	185	22	25	21	30	1.99
6794598--6794640	15	2.8	14	78	21	50	67	0	2	30	1.03
6800092--6800132	20	2.0	20	100	0	82	34	4	14	46	1.66
6809171--6809201	15	2.0	16	93	6	55	70	12	0	16	1.16
6818643--6818674	16	2.0	16	93	0	55	53	3	6	37	1.42
6820603--6820627	13	1.9	13	100	0	50	32	0	4	64	1.12
6827864--6827891	5	5.6	5	100	0	56	17	0	0	82	0.68
6840380--6840431	16	3.1	17	78	10	54	61	1	1	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6841112--6841164	19	2.8	19	85	0	79	39	9	11	39	1.74
6846929--6846994	7	9.4	7	79	0	60	21	27	7	43	1.79
6846921--6846994	14	5.3	14	78	0	67	21	25	8	44	1.79
6846926--6846983	21	2.8	21	94	0	98	15	29	10	44	1.79
6847914--6847990	40	1.9	39	82	10	93	32	22	20	24	1.98
6849110--6849152	21	2.0	21	95	0	77	16	25	18	39	1.91
6855367--6855406	11	3.6	11	83	10	55	27	0	0	72	0.85
6863303--6863354	24	2.2	24	89	0	77	55	9	1	32	1.43
6864406--6864500	31	3.1	31	81	4	113	53	14	11	20	1.71
6864419--6864504	31	2.8	31	85	0	118	54	12	11	20	1.69
6866373--6866455	10	8.3	10	71	14	64	38	2	2	56	1.25
6866378--6866454	41	1.9	41	84	5	104	40	2	2	54	1.28
6866366--6866455	19	4.6	20	70	16	55	38	2	3	55	1.29
6866366--6866459	10	9.5	10	70	21	56	39	2	3	55	1.28
6866366--6866472	39	2.7	37	75	12	97	41	1	2	54	1.26
6867352--6867428	40	1.9	39	84	7	102	38	6	2	51	1.41
6867367--6867434	17	3.9	18	76	5	61	38	5	4	51	1.46
6871902--6872004	20	5.2	19	64	9	53	34	14	32	18	1.91
6872019--6872123	20	5.2	20	64	8	61	36	17	29	17	1.92
6871902--6872140	40	6.0	40	88	0	334	35	16	28	19	1.93
6878905--6879193	40	7.2	40	83	0	326	37	19	25	17	1.93
6893910--6893934	5	5.0	5	100	0	50	40	20	0	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6895390--6895429	21	1.9	21	89	0	62	55	0	0	45	0.99
6895390--6895440	26	2.0	24	88	7	75	54	0	0	45	0.99
6898113--6898150	20	1.9	20	94	0	67	31	0	0	68	0.90
6898917--6898956	21	1.9	21	89	0	62	15	2	5	77	1.04
6902020--6902044	5	5.0	5	100	0	50	40	0	0	60	0.97
6903009--6903035	2	13.5	2	100	0	54	48	0	0	51	1.00
6910371--6910424	23	2.3	24	78	15	60	42	25	3	27	1.72
6916777--6916819	19	2.1	21	83	8	54	46	0	2	51	1.13
6916879--6916904	2	13.0	2	100	0	52	50	0	0	50	1.00
6924261--6924299	20	1.9	21	89	5	62	43	0	12	43	1.42
6934703--6934729	13	2.1	13	100	0	54	14	0	14	70	1.17
6936379--6936423	14	3.4	14	79	8	51	37	6	2	53	1.40
6936459--6936497	16	2.5	15	87	4	51	46	10	5	38	1.60
6936762--6936791	15	2.0	15	93	0	51	20	16	6	56	1.62
6936848--6937166	112	2.9	113	90	2	495	33	15	17	32	1.92
6941517--6941615	43	2.3	44	81	10	123	32	13	27	27	1.93
6941518--6941639	43	2.8	43	78	10	108	31	13	27	27	1.93
6942763--6944283	100	15.3	100	91	1	2225	33	25	19	21	1.97
6942763--6944490	50	34.7	50	72	6	1063	32	25	19	21	1.97
6942763--6944345	498	3.2	498	90	1	2404	32	25	19	21	1.97
6945396--6945424	15	1.9	15	100	0	58	6	10	0	82	0.83
6946393--6946431	16	2.5	16	87	4	53	46	10	5	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6946780--6947098	112	2.9	113	92	2	513	32	16	18	31	1.93
6947825--6947859	18	1.9	18	88	0	52	20	2	37	40	1.67
6952961--6953004	21	2.1	21	87	8	63	61	0	11	27	1.30
6962425--6962499	29	2.5	31	86	4	100	26	13	13	46	1.80
6968102--6968237	35	3.9	35	85	0	164	22	26	16	35	1.94
6973122--6973230	52	2.1	52	100	0	218	37	13	11	37	1.81
6977831--6977873	18	2.3	19	88	11	63	62	0	9	27	1.25
6977845--6977885	15	2.6	17	82	17	54	65	0	4	29	1.13
6977952--6978043	3	31.3	3	69	16	50	61	3	4	30	1.31
6977996--6978060	26	2.5	26	76	14	71	60	1	0	38	1.07
6979910--6980104	73	2.7	72	89	6	288	31	18	17	31	1.95
6980514--6980871	77	4.8	72	84	8	391	34	19	15	31	1.92
6980514--6980871	148	2.4	148	83	6	445	34	19	15	31	1.92
6980870--6981047	72	2.5	70	83	4	198	34	22	14	28	1.93
6988187--6988262	27	2.8	27	73	13	66	69	0	15	14	1.19
6990559--6990585	4	6.8	4	100	0	54	0	22	0	77	0.76
6993905--6994276	113	3.3	112	91	2	584	22	23	24	30	1.99
6994368--6994418	26	2.0	26	84	0	66	58	5	11	23	1.55
6994817--6994849	14	2.4	14	85	14	50	18	0	42	39	1.50
6994791--6995088	91	3.6	81	83	12	354	28	1	24	45	1.60
6995119--6995157	18	2.2	18	90	4	62	35	7	20	35	1.81
6995466--6995496	9	3.3	9	95	4	53	77	0	3	19	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6997229--6997274	22	2.1	22	91	0	74	45	10	0	43	1.39
6997295--6997333	9	4.6	9	87	12	64	43	23	0	33	1.54
6997300--6997332	16	2.1	16	100	0	66	45	24	0	30	1.53
6997239--6997500	81	3.2	82	84	9	318	41	14	3	40	1.63
6997434--6997501	9	7.8	9	72	6	59	41	16	2	39	1.63
6997503--6997559	25	2.3	25	84	0	69	43	14	5	36	1.67
7003003--7003173	66	2.6	65	84	4	209	40	19	27	12	1.87
7003144--7003188	21	2.1	21	87	0	63	40	17	40	2	1.62
7003153--7003211	21	2.8	21	84	0	73	33	20	42	3	1.69
7003522--7003835	43	7.3	42	75	5	200	24	16	29	29	1.96
7003522--7003776	129	2.0	129	80	3	289	23	16	30	29	1.96
7003541--7003835	86	3.4	86	85	1	342	25	16	29	28	1.97
7004014--7004056	22	2.0	22	95	0	77	41	27	20	9	1.83
7005414--7005439	6	4.3	6	100	0	52	84	0	0	15	0.62
7006632--7006670	21	1.9	21	89	5	62	74	10	10	5	1.21
7013794--7013961	37	4.4	36	69	20	110	32	7	1	58	1.34
7014636--7014763	34	3.8	32	81	10	150	38	0	15	46	1.46
7014819--7015341	126	4.2	126	88	0	715	36	15	17	29	1.91
7017142--7017184	18	2.4	18	88	0	59	44	9	25	20	1.81
7018939--7019003	30	2.2	30	97	0	121	38	3	30	27	1.72
7021638--7021680	22	2.0	22	90	0	68	9	18	27	44	1.80
7021782--7022011	86	2.7	86	85	1	273	30	31	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7021782--7022011	43	5.3	43	79	2	219	30	31	16	21	1.95
7021865--7022036	86	2.0	86	83	0	218	29	30	15	24	1.96
7022361--7022452	21	4.4	21	79	8	82	3	42	17	36	1.66
7022423--7022588	66	2.5	66	84	3	201	13	28	17	40	1.87
7028078--7028528	9	52.3	9	67	19	98	40	1	13	44	1.53
7028082--7028226	16	8.7	16	72	14	80	40	1	17	41	1.58
7028080--7028226	34	4.4	33	73	11	111	39	1	17	41	1.58
7028183--7028226	16	2.8	16	100	0	88	31	0	25	43	1.55
7028247--7028292	22	2.1	22	91	0	74	43	0	10	45	1.39
7028214--7028400	56	3.2	57	82	12	238	41	2	10	45	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172