genome.fa.s22.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  166  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49146309--49146379	37	1.9	37	100	0	142	39	11	0	49	1.39
49146580--49146618	19	2.1	18	85	9	51	35	10	0	53	1.35
49146631--49146689	19	3.2	19	78	4	75	49	1	11	37	1.50
49146884--49146954	37	1.9	37	100	0	142	49	0	11	39	1.39
49146890--49146958	19	3.7	19	82	5	97	52	0	10	37	1.36
49147034--49147092	27	2.2	27	87	0	82	18	28	22	30	1.97
49149838--49149862	13	1.9	13	100	0	50	92	8	0	0	0.40
49161277--49161344	29	2.4	29	81	11	72	55	7	4	32	1.47
49161341--49161403	28	2.3	28	83	2	83	61	6	1	30	1.30
49161833--49161866	14	2.4	14	90	5	50	64	2	2	29	1.22
49170684--49170742	23	2.6	22	82	10	75	44	20	3	32	1.68
49175827--49175885	23	2.6	22	82	10	75	44	20	3	32	1.68
49175985--49176135	75	2.0	75	100	0	302	21	31	24	22	1.98
49176826--49176876	24	2.1	24	88	0	75	25	11	33	29	1.91
49177841--49177896	26	2.2	26	87	6	78	42	0	5	51	1.24
49179600--49179624	11	2.3	11	100	0	50	56	12	8	24	1.62
49179626--49179685	24	2.6	24	81	5	70	68	16	8	6	1.37
49181184--49181225	20	2.1	20	82	8	50	50	2	0	47	1.14
49186699--49187095	216	1.9	208	80	9	462	28	13	25	32	1.94
49189450--49189492	21	2.1	20	86	4	59	48	2	0	48	1.14
49200297--49200367	26	2.7	25	75	12	63	57	5	2	33	1.37
49201773--49201874	29	3.5	31	75	19	78	35	2	3	57	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49201854--49201904	17	2.9	17	83	11	66	27	3	1	66	1.20
49201917--49202002	29	3.0	29	81	8	104	36	2	0	61	1.09
49201914--49201972	10	6.1	10	80	7	68	37	1	0	61	1.07
49202102--49202171	36	1.9	36	97	0	131	41	17	21	20	1.90
49204798--49205124	163	2.0	163	100	0	654	34	15	25	24	1.95
49205388--49205505	59	2.0	59	100	0	236	32	25	11	30	1.92
49205836--49205889	27	2.0	27	100	0	108	51	11	22	14	1.73
49206905--49206929	7	3.6	7	100	0	50	44	0	0	56	0.99
49209325--49209385	28	2.2	28	82	11	72	24	11	19	44	1.84
49209321--49209385	29	2.3	28	78	7	78	24	13	18	43	1.87
49209608--49209685	23	3.6	21	87	6	111	32	28	0	39	1.57
49209608--49209685	22	3.6	21	89	6	111	32	28	0	39	1.57
49209634--49209737	53	2.0	51	85	7	138	32	32	0	34	1.58
49209656--49209715	30	2.0	31	90	3	95	30	35	0	35	1.58
49209687--49209728	22	1.9	22	90	0	66	33	33	0	33	1.58
49209925--49209958	15	2.3	15	90	5	52	26	0	5	67	1.13
49212989--49213254	125	2.1	123	85	2	354	31	23	15	29	1.95
49214627--49214668	11	3.8	11	78	9	50	66	0	2	30	1.04
49215248--49215322	31	2.5	31	97	2	143	61	16	5	17	1.52
49220114--49220208	22	4.6	21	75	15	65	36	2	0	61	1.08
49220151--49220230	11	7.7	11	80	16	91	41	1	0	57	1.07
49220114--49220261	61	2.4	59	80	10	181	39	2	0	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49220221--49220261	21	2.0	21	95	0	73	41	2	0	56	1.13
49238045--49238090	23	2.0	23	91	0	74	39	30	21	8	1.84
49240079--49240274	100	2.0	101	90	1	313	20	31	22	25	1.98
49240079--49240317	50	4.6	50	83	5	273	22	29	22	25	1.99
49247438--49247489	16	3.2	16	97	0	95	26	0	34	38	1.57
49247705--49247746	15	2.7	16	82	14	52	47	2	0	50	1.14
49247845--49247879	18	2.0	17	88	5	52	54	0	0	45	0.99
49247708--49247970	120	2.2	120	99	0	517	48	4	2	44	1.37
49248055--49248193	47	3.0	46	71	16	144	46	4	2	46	1.34
49248033--49248155	44	2.7	43	71	17	106	48	2	2	46	1.28
49248157--49248190	16	2.1	16	89	10	52	50	5	0	44	1.26
49248431--49248561	66	2.0	66	93	0	226	35	20	10	32	1.87
49255180--49255234	15	3.4	15	79	18	65	40	9	20	30	1.83
49265924--49266009	42	2.1	41	91	2	136	62	1	2	33	1.15
49266431--49266461	12	2.6	12	94	0	53	41	0	0	58	0.98
49266948--49267041	31	3.1	30	72	13	77	44	5	4	45	1.45
49280332--49280385	24	2.2	25	78	15	60	33	1	0	64	1.04
49284710--49284738	6	4.8	6	100	0	58	86	0	13	0	0.58
49289890--49289958	19	3.6	19	81	16	81	39	0	5	55	1.24
49289891--49289958	20	3.5	19	84	13	70	38	0	5	55	1.24
49291458--49291575	40	2.9	39	81	13	109	19	32	27	21	1.97
49291580--49291639	29	2.1	28	84	6	77	41	18	13	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49294463--49294529	34	1.9	35	87	3	100	31	8	14	44	1.76
49299106--49299212	21	5.1	21	76	0	106	16	20	17	44	1.86
49299106--49299241	42	3.2	42	86	2	175	16	21	18	44	1.87
49302918--49302981	31	2.1	31	100	0	128	35	15	18	29	1.92
49314143--49314207	15	4.1	15	76	7	67	64	7	3	24	1.34
49320914--49321018	52	2.0	52	96	0	192	37	13	14	35	1.85
49326267--49326295	2	14.5	2	100	0	58	51	0	0	48	1.00
49326857--49326898	18	2.3	18	88	8	59	23	11	2	61	1.42
49327458--49327504	25	1.9	24	83	12	60	63	4	0	31	1.13
49329807--49329837	14	2.2	14	94	0	53	48	9	0	41	1.36
49336899--49336987	22	3.9	24	78	15	91	35	21	25	16	1.94
49336899--49337000	25	4.3	24	79	13	106	37	20	25	16	1.93
49338013--49338056	23	1.9	23	90	0	70	43	9	4	43	1.56
49338953--49338977	6	4.2	6	100	0	50	0	16	0	84	0.63
49343919--49344012	47	2.0	47	100	0	188	29	23	4	42	1.73
49344497--49344538	3	14.0	3	94	0	75	33	2	0	64	1.07
49347245--49347296	27	1.9	27	84	7	70	50	0	1	48	1.12
49348762--49348804	22	2.1	21	87	12	63	48	0	0	51	1.00
49355706--49355739	14	2.5	14	95	4	61	14	0	35	50	1.44
49362844--49362880	10	3.7	10	92	7	58	0	8	0	91	0.41
49362844--49362880	12	3.2	12	85	14	60	0	8	0	91	0.41
49362845--49362883	18	2.1	18	90	4	60	0	10	0	89	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49362844--49362898	22	2.4	23	87	6	76	1	14	0	83	0.73
49364014--49364045	15	2.1	16	94	5	57	65	9	0	25	1.22
49366508--49366552	16	2.8	17	78	21	53	55	2	0	42	1.12
49368633--49368686	14	3.8	13	79	13	54	51	1	1	44	1.22
49368626--49368684	30	2.0	30	90	6	93	52	1	1	44	1.21
49373316--49373348	16	1.9	18	88	11	52	45	6	3	45	1.43
49379119--49379161	17	2.5	18	81	11	54	46	2	0	51	1.13
49380120--49380193	36	2.0	37	82	12	89	62	5	5	27	1.39
49398347--49398383	4	9.8	4	91	5	51	81	0	18	0	0.70
49407425--49407511	27	3.2	27	85	0	120	24	26	29	19	1.98
49408502--49408566	33	2.0	33	87	0	94	21	15	50	12	1.76
49411498--49411616	60	2.0	60	93	0	202	54	12	0	32	1.38
49411953--49412009	27	2.1	27	90	0	87	15	26	29	28	1.96
49412073--49412136	24	2.7	25	72	18	64	57	1	0	40	1.08
49412769--49412813	18	2.4	19	77	7	56	40	44	2	13	1.56
49412853--49412895	6	7.0	6	82	15	52	67	13	2	16	1.33
49415640--49415683	23	1.9	23	86	9	63	68	6	4	20	1.31
49422795--49422971	69	2.6	69	90	0	282	36	19	14	29	1.91
49425365--49425618	84	3.0	84	87	1	357	29	11	16	42	1.83
49427859--49427909	26	1.9	27	88	4	77	15	11	7	64	1.48
49432113--49432193	25	3.3	24	75	13	76	17	23	20	38	1.93
49432124--49432193	24	2.8	24	75	12	70	17	22	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49432124--49432219	49	2.0	49	81	8	115	17	25	22	34	1.96
49435745--49435811	22	3.0	22	82	4	82	44	17	20	16	1.86
49438017--49438081	30	2.1	31	85	2	87	56	1	9	32	1.40
49439286--49439330	3	15.0	3	95	0	81	33	2	0	64	1.06
49442595--49442633	14	2.8	14	84	0	51	35	12	23	28	1.91
49443121--49443156	18	1.9	18	88	5	54	58	2	0	38	1.13
49444470--49444523	25	2.2	24	83	6	63	42	5	3	48	1.44
49449200--49449239	4	10.0	4	100	0	80	75	0	0	25	0.81
49449522--49449585	22	2.7	22	77	15	58	48	4	10	35	1.59
49449765--49449817	24	2.2	24	82	0	61	50	1	9	37	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172