genome.fa.s22.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  44  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11665271--11665648	188	2.0	189	84	4	496	32	18	23	25	1.97
11665818--11665915	44	2.2	46	82	8	123	31	13	27	27	1.94
11665918--11666155	128	1.9	128	88	1	361	30	21	21	27	1.98
11667483--11667542	22	2.7	23	82	10	72	33	16	6	43	1.74
11670251--11670302	3	17.3	3	100	0	104	32	0	0	67	0.91
11671573--11671693	49	2.5	49	91	0	188	23	19	35	21	1.96
11671633--11671657	13	1.9	13	100	0	50	16	16	48	20	1.82
11673420--11673614	48	4.1	48	80	2	194	27	22	28	22	1.99
11679290--11679486	48	4.1	48	78	0	196	26	20	28	23	1.99
11683002--11683043	21	2.0	21	100	0	84	38	9	19	33	1.84
11688542--11688574	16	2.1	16	100	0	66	24	12	45	18	1.83
11704312--11704363	26	2.0	27	85	11	72	75	3	19	1	1.06
11708661--11708698	10	3.8	10	86	10	51	47	0	10	42	1.38
11708657--11708698	19	2.2	19	87	8	59	47	0	9	42	1.36
11714194--11714234	18	2.4	17	84	8	55	53	14	12	19	1.72
11714484--11714649	90	1.9	89	97	1	314	35	27	13	23	1.92
11714701--11714731	16	1.9	16	100	0	62	48	6	6	38	1.55
11715305--11715452	76	2.0	75	93	1	251	49	18	12	20	1.79
11723128--11723162	18	1.9	18	88	11	54	65	0	17	17	1.27
11725373--11725520	57	2.5	59	84	9	185	30	22	25	22	1.99
11725646--11725773	67	1.9	67	90	3	204	21	16	31	30	1.95
11729003--11729112	23	5.1	21	80	9	123	38	22	19	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11730081--11730127	4	11.8	4	80	17	53	0	23	0	76	0.78
11730174--11730223	19	2.6	19	84	6	66	16	12	2	70	1.26
11730174--11730219	10	4.8	10	78	7	51	15	10	2	71	1.23
11734828--11734859	8	4.0	8	100	0	64	87	0	12	0	0.54
11746402--11746611	44	4.7	44	84	3	249	27	21	20	30	1.98
11749382--11749413	8	4.0	8	100	0	64	87	0	12	0	0.54
11761131--11761527	92	4.4	89	72	10	288	29	20	17	32	1.96
11760955--11761528	180	3.2	180	82	6	619	28	20	19	31	1.97
11760950--11761566	44	13.6	45	73	12	388	27	21	18	31	1.97
11762404--11762449	21	2.2	21	84	7	58	2	15	2	80	0.91
11762400--11762451	5	10.4	5	80	19	56	1	17	1	78	0.93
11765017--11765071	3	18.3	3	88	0	83	61	0	5	32	1.19
11765016--11765085	15	4.7	15	87	0	77	58	1	10	30	1.39
11765310--11765360	15	3.5	14	84	10	50	58	1	11	27	1.44
11766864--11767096	46	4.9	47	83	6	283	29	24	17	28	1.97
11766845--11767096	97	2.6	97	86	4	336	29	24	16	29	1.97
11767086--11767125	21	1.9	21	90	10	64	25	25	7	42	1.80
11767567--11767615	24	2.0	24	92	0	80	26	24	14	34	1.94
11768545--11768630	45	1.9	44	90	2	136	16	19	22	41	1.90
11778122--11778155	16	2.1	16	88	0	50	44	20	14	20	1.87
11779966--11780016	15	3.5	14	84	10	50	58	1	11	27	1.44
11799002--11799099	27	3.5	28	87	2	126	27	13	27	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11799032--11799113	27	2.9	27	85	5	83	30	12	23	34	1.91
11820851--11820890	16	2.4	16	87	4	62	45	2	2	50	1.28
11822860--11822985	43	2.9	43	81	0	144	30	27	17	23	1.97
11823459--11823495	18	2.1	18	100	0	74	56	21	0	21	1.42
11823855--11824020	41	4.1	41	86	2	228	19	22	22	35	1.96
11823855--11824020	81	2.0	81	87	2	235	19	22	22	35	1.96
11824500--11824551	27	1.9	27	92	0	86	25	15	9	50	1.74
11832727--11832765	6	6.3	6	88	5	60	64	0	20	15	1.30
11832727--11832765	18	2.1	19	95	4	71	64	0	20	15	1.30
11840033--11840078	24	1.9	24	86	0	65	45	19	26	8	1.79
11857930--11857961	17	1.9	16	93	6	55	43	6	9	40	1.62
11858038--11858063	12	2.2	12	100	0	52	7	0	7	84	0.77
11865342--11865378	17	2.1	19	85	14	53	13	13	2	70	1.28
11868136--11868187	27	1.9	27	92	0	86	34	26	19	19	1.95
11868135--11868194	27	2.2	27	84	0	84	38	25	18	18	1.93
11868357--11868411	26	2.1	26	96	0	101	21	18	20	40	1.92
11870747--11870780	17	2.0	17	88	0	50	47	0	5	47	1.26
11872002--11872064	21	3.0	21	97	0	117	42	15	9	31	1.79
11874768--11875140	44	8.6	42	69	14	139	28	23	19	28	1.98
11874939--11875219	84	3.3	84	71	9	262	30	22	19	27	1.98
11878264--11878311	21	2.3	20	79	13	53	25	27	18	29	1.98
11878946--11878979	17	1.9	18	88	5	52	26	2	8	61	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11880592--11880642	25	2.1	23	82	13	59	35	25	19	19	1.95
11892729--11892774	21	2.2	21	84	7	58	32	4	6	56	1.45
11893180--11893228	16	3.1	16	93	0	80	34	2	36	26	1.68
11893460--11893494	18	2.0	17	88	5	52	54	0	0	45	0.99
11893440--11893726	119	2.4	120	90	2	470	49	4	1	43	1.34
11897710--11897744	14	2.5	14	90	0	61	60	0	0	40	0.97
11901401--11901586	51	3.7	50	79	7	214	31	25	16	25	1.96
11901391--11901579	102	1.9	101	91	3	308	31	26	16	25	1.96
11901497--11901578	26	3.2	26	64	19	73	31	26	15	25	1.96
11902746--11902786	12	3.3	13	83	10	59	24	0	0	75	0.80
11903247--11903286	17	2.4	17	87	4	55	62	5	25	7	1.42
11904666--11904730	6	10.5	6	82	12	78	13	3	4	78	1.03
11904757--11904784	3	9.3	3	100	0	56	32	0	0	67	0.91
11905572--11905609	9	4.0	10	86	6	53	81	0	0	18	0.69
11905572--11905609	19	2.0	19	85	10	51	81	0	0	18	0.69
11910483--11910851	104	3.6	104	94	3	647	30	30	20	18	1.97
11911176--11911239	30	2.2	29	81	10	76	29	28	6	35	1.82
11911183--11911239	30	1.9	30	85	3	80	29	24	7	38	1.82
11916130--11916313	52	3.7	50	75	12	189	31	25	16	26	1.97
11916120--11916306	98	1.9	100	90	5	299	31	26	16	26	1.97
11917462--11917501	4	10.0	4	84	10	55	25	0	0	75	0.81
11919367--11919434	19	3.6	17	74	18	64	13	2	4	79	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11919367--11919433	13	5.2	13	76	16	61	13	2	4	79	1.01
11919367--11919432	6	10.5	6	76	15	62	13	3	4	78	1.02
11919459--11919486	3	9.3	3	100	0	56	32	0	0	67	0.91
11920250--11920288	12	3.2	12	81	3	51	84	0	0	15	0.62
11925265--11925316	27	1.9	27	96	0	95	28	32	25	13	1.93
11925127--11925497	104	3.5	104	89	4	541	30	29	20	19	1.97
11932795--11932850	27	2.0	28	89	3	87	28	33	21	16	1.95
11932761--11933130	103	3.6	102	88	7	523	30	30	19	19	1.96
11933556--11933598	20	2.1	20	95	4	77	67	0	16	16	1.24
11933556--11933596	7	5.9	7	88	11	66	70	0	14	14	1.16
11934825--11935228	128	3.1	128	93	1	675	30	20	23	25	1.98
11936195--11936258	32	2.0	31	90	3	101	39	23	9	28	1.86
11936473--11936669	41	4.8	41	92	5	317	27	22	20	28	1.99
11938171--11938195	13	1.9	13	100	0	50	68	24	0	8	1.16
11943832--11943895	32	2.0	31	90	3	101	39	23	9	28	1.86
11944112--11944267	41	3.8	41	89	6	235	28	22	20	28	1.98
11945790--11945814	13	1.9	13	100	0	50	68	24	0	8	1.16
11945980--11946093	44	2.6	44	72	8	115	28	21	25	24	1.99
11947754--11947781	3	9.3	3	100	0	56	32	0	0	67	0.91
11947856--11947889	14	2.3	15	90	5	52	35	2	0	61	1.11
11948912--11948956	22	2.0	22	83	8	56	26	46	4	22	1.70
11949156--11949225	27	2.6	27	73	10	72	34	12	18	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11955366--11955419	19	3.0	18	78	15	67	37	0	1	61	1.07
11955365--11955418	9	6.1	9	74	18	51	35	0	1	62	1.06
11955714--11955787	10	7.6	9	74	15	58	29	2	4	63	1.26
11955901--11955958	21	2.9	18	74	18	53	36	0	1	62	1.06
11955863--11956061	100	2.0	99	97	2	375	33	3	3	60	1.27
11955863--11956009	48	3.1	47	78	12	190	31	4	3	60	1.32
11956032--11956091	19	3.1	19	76	13	68	30	1	6	61	1.31
11955855--11956062	97	2.1	94	90	8	344	32	3	2	60	1.29
11956098--11956155	31	1.9	31	89	3	91	50	15	6	27	1.70
11957782--11957825	21	2.1	21	86	0	61	47	11	4	36	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172