genome.fa.s22.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  60  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16478671--16478732	7	9.0	7	85	8	83	67	0	17	14	1.23
16478671--16478732	20	3.0	21	88	6	83	67	0	17	14	1.23
16479855--16480548	87	8.0	87	93	0	1075	28	22	25	23	2.00
16480082--16480393	43	7.2	43	62	22	132	28	23	24	22	1.99
16479855--16480548	349	2.0	348	89	1	971	28	22	25	23	2.00
16483766--16483799	17	2.0	17	100	0	68	11	58	5	23	1.55
16490592--16490616	13	1.9	13	100	0	50	72	16	8	4	1.24
16499871--16499920	25	2.0	25	92	0	82	32	10	18	40	1.83
16500979--16501009	16	2.0	16	93	6	55	19	6	19	54	1.65
16510269--16510363	39	2.5	39	87	1	129	49	18	4	27	1.66
16514036--16514277	50	4.7	50	79	6	202	26	21	28	23	1.99
16527316--16527381	27	2.4	28	94	2	116	25	12	28	33	1.92
16527316--16527395	27	2.9	27	86	5	88	28	11	25	35	1.90
16535293--16535358	27	2.4	28	94	2	116	25	12	28	33	1.92
16535293--16535372	27	2.9	27	86	5	88	28	11	25	35	1.90
16547784--16547986	33	5.6	33	70	21	147	20	18	26	34	1.96
16547782--16548067	75	3.8	75	86	2	403	22	17	26	33	1.96
16548983--16549035	23	2.3	23	90	0	88	33	26	18	20	1.96
16563084--16563205	46	2.7	46	81	0	136	31	24	16	27	1.96
16563119--16563216	46	2.1	46	86	0	133	32	27	16	23	1.96
16565458--16565500	21	2.0	21	100	0	86	51	9	20	18	1.74
16565454--16565480	14	1.9	14	100	0	54	48	7	22	22	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16565954--16566016	32	2.0	32	96	3	119	49	12	6	31	1.66
16572144--16572205	32	2.0	32	96	3	117	46	12	8	32	1.71
16574641--16574767	64	2.0	64	92	0	209	40	15	3	40	1.63
16575040--16575110	34	2.1	34	100	0	142	42	8	11	38	1.71
16575631--16576044	126	3.3	126	92	0	650	32	19	20	26	1.97
16579422--16579468	21	2.2	21	84	0	58	14	19	31	34	1.92
16580372--16580397	7	3.7	7	100	0	52	57	15	0	26	1.38
16591133--16591307	68	2.6	68	88	0	260	24	20	16	39	1.91
16591120--16591316	68	2.9	67	81	6	252	24	21	17	37	1.94
16593007--16593039	3	11.3	3	87	6	50	63	0	36	0	0.95
16593207--16593542	22	15.1	22	72	16	207	31	0	12	55	1.43
16593231--16593287	19	2.9	19	86	2	78	33	0	14	52	1.41
16593206--16593545	83	3.8	85	77	12	244	31	0	12	55	1.44
16593332--16593545	19	11.4	19	64	26	91	30	1	13	54	1.48
16593341--16593619	49	5.7	49	82	6	345	30	1	13	54	1.47
16593341--16593566	27	9.1	25	76	18	215	31	1	13	53	1.47
16593762--16593836	38	1.9	39	91	2	125	54	5	2	37	1.37
16593945--16593986	16	2.7	15	85	7	57	38	2	2	57	1.25
16598969--16599013	22	2.1	21	91	4	72	0	33	2	64	1.06
16598971--16599022	22	2.8	18	75	25	54	0	36	1	61	1.07
16599079--16599154	27	2.8	27	90	4	109	22	36	21	19	1.95
16615338--16615427	28	3.2	27	80	12	101	34	23	12	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16615360--16615761	29	14.0	29	80	8	400	39	22	14	24	1.91
16618599--16618837	85	2.8	85	83	2	286	26	18	25	29	1.98
16618599--16618837	42	5.7	43	82	5	208	26	18	25	29	1.98
16621505--16621534	15	2.0	15	93	0	51	36	20	3	40	1.69
16625269--16625358	44	2.1	43	91	2	144	34	25	12	27	1.92
16636272--16636313	20	2.0	21	86	13	61	59	4	2	33	1.31
16637170--16637311	50	2.8	50	79	2	169	28	22	28	19	1.98
16643555--16643690	50	2.7	50	82	0	155	28	23	29	18	1.98
16648338--16648592	27	9.5	27	80	2	210	41	21	14	21	1.90
16659035--16659227	51	3.8	50	84	4	244	31	24	15	29	1.96
16663128--16663206	37	2.1	37	90	0	122	25	31	18	24	1.98
16663324--16663875	47	11.7	47	97	0	1014	30	29	8	31	1.87
16663408--16663486	25	3.3	25	64	10	74	34	27	5	32	1.79
16663428--16663790	23	15.5	23	59	11	76	30	28	8	31	1.87
16663406--16663815	24	17.4	24	59	11	96	31	28	7	32	1.85
16671280--16671389	24	4.7	24	81	7	127	49	4	24	21	1.68
16677692--16677879	27	7.0	27	83	3	182	20	17	20	41	1.90
16677702--16677879	54	3.3	54	82	3	241	19	18	19	42	1.90
16677705--16677879	81	2.2	81	87	0	242	19	18	19	42	1.90
16681613--16681697	24	3.6	24	79	1	100	47	5	25	21	1.73
16690885--16690949	30	2.2	30	83	10	80	53	1	10	33	1.45
16692967--16693032	30	2.3	28	76	7	69	51	0	3	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16693259--16693295	1	37.0	1	100	0	74	100	0	0	0	0.00
16693745--16693783	6	6.2	6	82	11	51	33	2	0	64	1.08
16693736--16693800	25	2.5	26	78	11	73	32	3	1	63	1.19
16697063--16697153	48	1.9	47	86	2	128	39	29	12	18	1.87
16697370--16697407	15	2.4	16	82	4	51	31	23	10	34	1.89
16699415--16699445	16	1.9	16	93	0	53	61	22	3	12	1.46
16699635--16699679	22	2.0	22	87	8	65	51	20	0	28	1.48
16702587--16702635	25	2.0	25	88	8	73	38	18	12	30	1.87
16702512--16702625	50	2.3	50	78	3	122	36	21	14	27	1.92
16704183--16704289	44	2.4	44	85	0	142	51	23	14	11	1.73
16711399--16711440	21	2.0	22	85	4	59	59	11	9	19	1.59
16711789--16711827	18	2.2	18	90	0	60	51	7	2	38	1.44
16714381--16714438	13	4.5	13	75	0	53	31	3	20	44	1.68
16714381--16714436	26	2.2	26	83	0	67	30	3	19	46	1.67
16719812--16719859	23	2.1	23	100	0	96	31	20	20	27	1.98
16719816--16719867	23	2.3	23	93	0	86	32	25	19	23	1.97
16729459--16729969	266	1.9	268	87	2	751	27	20	25	26	1.99
16729985--16730151	44	3.8	44	73	7	117	28	20	22	28	1.99
16731353--16731386	11	3.1	11	86	0	50	23	32	32	11	1.91
16742176--16742218	18	2.5	17	81	7	52	32	0	16	51	1.45
16759196--16759241	24	1.9	24	95	0	83	47	15	8	28	1.74
16763710--16764022	157	2.0	156	89	0	482	30	19	14	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16765388--16765567	51	3.5	51	80	3	168	25	16	26	31	1.96
16765489--16765569	26	3.2	26	62	22	62	23	14	28	33	1.94
16765576--16765662	45	1.9	45	95	0	156	26	16	22	34	1.95
16768664--16768706	9	4.8	9	82	0	50	58	4	0	37	1.19
16768934--16768964	16	2.0	15	93	6	53	45	3	0	51	1.17
16782292--16782347	27	2.1	27	100	0	112	41	3	17	37	1.67
16784693--16784885	51	3.8	51	81	2	228	30	24	15	29	1.95
16787058--16787336	50	5.5	50	83	3	157	24	27	20	27	1.99
16787107--16787336	50	4.5	50	85	3	253	23	29	21	25	1.99
16787680--16787737	30	1.9	30	85	0	80	32	25	3	37	1.73
16792847--16792897	23	2.2	23	92	0	84	27	9	21	41	1.84
16796663--16796883	51	4.4	50	81	3	237	25	16	28	29	1.97
16796663--16796883	101	2.2	101	83	2	264	25	16	28	29	1.97
16798377--16798406	14	2.1	14	93	0	51	36	16	0	46	1.47
16804666--16804770	21	5.0	21	72	0	93	42	18	22	16	1.88
16804630--16804770	42	3.4	42	81	2	140	42	17	21	17	1.89
16812360--16812399	21	1.9	21	89	0	62	50	25	12	12	1.75
16812389--16812518	42	3.1	42	78	4	136	43	16	23	16	1.88
16812389--16812442	21	2.6	21	72	0	54	42	16	25	14	1.87
16816806--16816858	18	2.9	18	82	0	61	43	26	11	18	1.84
16818276--16818317	21	2.0	21	90	0	66	33	4	19	42	1.72
16818410--16818461	19	2.7	19	77	11	61	46	9	9	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16819370--16819409	15	2.6	16	77	22	50	50	0	0	50	1.00
16819518--16819583	31	2.2	31	91	2	107	53	3	0	43	1.16
16822992--16823037	20	2.3	20	92	0	74	36	15	4	43	1.66
16825623--16825907	43	6.7	43	75	11	248	34	23	17	24	1.96
16825631--16825945	43	7.5	41	75	10	231	34	24	16	24	1.95
16825624--16825945	85	3.8	85	87	0	421	34	23	17	24	1.96
16830839--16830880	8	5.5	8	80	11	52	35	16	0	47	1.47
16830839--16830882	22	2.0	22	95	0	79	36	15	0	47	1.46
16836770--16836812	19	2.3	19	84	11	61	62	0	9	27	1.25
16836771--16836818	22	2.4	19	82	10	51	60	0	8	31	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172