genome.fa.s22.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  120  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34174467--34174501	18	2.0	17	88	5	52	54	0	0	45	0.99
34174565--34174605	15	2.8	15	82	10	50	53	2	0	43	1.13
34174450--34174739	121	2.4	120	91	4	471	49	5	2	41	1.41
34174739--34174970	91	2.5	92	84	4	276	48	5	2	44	1.37
34174783--34174843	28	2.2	28	85	5	81	50	3	0	45	1.17
34174790--34174933	47	3.1	46	65	23	113	49	4	1	44	1.32
34174758--34174963	91	2.3	91	91	0	331	47	4	2	45	1.37
34174783--34174925	44	3.2	43	68	16	119	48	4	1	46	1.30
34174808--34174946	47	3.0	47	68	17	137	49	5	1	43	1.33
34188051--34188138	42	2.1	42	93	0	149	40	19	7	31	1.80
34188188--34188229	13	3.1	14	86	10	52	42	28	0	28	1.56
34194383--34194610	92	2.5	93	81	7	277	43	28	10	17	1.82
34196424--34196454	16	1.9	16	100	0	62	25	22	32	19	1.97
34196796--34196885	33	2.7	33	87	0	135	14	11	35	38	1.82
34198333--34198380	20	2.3	21	85	3	71	39	25	6	29	1.80
34210676--34210724	6	7.8	6	79	6	53	40	16	24	18	1.90
34210711--34210864	39	3.8	38	79	9	139	38	22	19	19	1.93
34210702--34210847	45	3.4	44	77	14	169	40	21	19	19	1.92
34214962--34215115	39	3.8	39	77	10	139	19	18	22	39	1.92
34214983--34215127	45	3.4	44	79	8	147	19	17	21	41	1.91
34227394--34227466	34	2.2	32	78	9	76	63	5	1	30	1.26
34228012--34228039	6	4.7	6	100	0	56	17	35	0	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34229744--34229794	25	2.0	25	100	0	102	17	27	15	39	1.90
34230646--34230671	3	8.7	3	100	0	52	69	0	0	30	0.89
34234998--34235032	3	11.7	3	100	0	70	68	0	0	31	0.90
34242390--34242443	19	2.9	19	72	25	53	37	0	12	50	1.41
34242631--34242672	14	2.9	15	82	13	52	40	9	2	47	1.49
34251081--34251193	61	1.9	59	85	10	158	44	6	4	45	1.49
34257081--34257273	50	3.8	50	88	0	278	21	31	22	25	1.98
34270971--34271018	24	2.0	24	100	0	96	45	16	16	20	1.85
34273443--34273760	107	3.0	107	92	0	528	31	18	18	31	1.95
34275548--34275588	21	1.9	22	90	5	66	70	0	0	29	0.87
34279256--34279524	46	5.6	46	84	10	340	34	14	22	28	1.93
34279256--34279524	98	2.7	98	93	0	457	34	14	22	28	1.93
34279488--34279596	37	3.0	37	90	2	177	35	16	22	24	1.95
34282083--34282287	88	2.3	91	87	5	283	45	3	4	46	1.39
34282205--34282330	47	2.6	49	71	11	114	44	2	2	50	1.27
34282428--34282479	15	3.6	15	80	12	56	44	0	1	53	1.11
34282303--34282596	119	2.5	119	94	2	511	42	2	4	50	1.38
34282547--34282588	15	2.9	15	82	10	52	47	0	0	52	1.00
34282687--34282789	45	2.5	39	74	18	109	33	28	2	34	1.72
34282704--34282794	45	2.0	44	85	6	121	37	26	3	32	1.73
34282775--34282810	16	2.2	16	90	9	56	36	33	0	30	1.58
34286682--34286720	20	1.9	21	85	15	55	71	0	7	20	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34286762--34286802	15	2.9	14	83	16	50	53	4	2	39	1.35
34288085--34288143	29	2.0	30	83	3	75	54	13	5	27	1.60
34297548--34297615	27	2.5	27	85	0	91	20	33	27	17	1.95
34297668--34297789	10	12.2	10	70	19	51	67	0	31	0	1.02
34297668--34297774	14	7.5	14	69	19	69	68	0	29	0	1.02
34297654--34297829	24	7.1	24	71	15	94	67	0	31	0	1.00
34297718--34297805	44	2.0	45	84	6	117	71	1	26	1	1.00
34297720--34297826	48	2.2	49	79	15	125	69	0	28	0	1.01
34297735--34297796	14	4.2	13	76	19	52	70	1	27	0	0.96
34297670--34297804	72	1.9	73	85	4	193	69	0	28	0	0.99
34297735--34297813	39	2.0	40	80	11	92	70	1	27	0	0.95
34297663--34297829	72	2.3	73	79	13	191	67	0	31	0	0.99
34298161--34299568	320	4.4	317	93	1	2356	49	8	11	30	1.68
34304589--34304688	42	2.4	41	80	8	105	51	12	5	32	1.60
34304711--34304750	3	13.3	3	100	0	80	65	0	0	35	0.93
34304987--34305054	27	2.5	27	85	0	82	17	29	33	19	1.95
34305901--34305925	10	2.5	10	100	0	50	32	0	0	68	0.90
34307202--34307246	20	2.2	20	88	0	63	57	2	2	37	1.23
34308368--34308428	27	2.2	28	82	11	81	50	0	3	45	1.17
34308380--34308436	27	2.1	27	87	6	80	52	1	1	43	1.21
34309668--34309714	22	2.0	24	88	8	71	46	2	0	51	1.13
34309842--34309866	6	4.2	6	100	0	50	84	0	0	16	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34322726--34323119	158	2.6	150	79	12	419	24	9	17	47	1.78
34324595--34324655	7	8.7	7	87	0	50	49	8	0	42	1.32
34324573--34324640	28	2.4	28	80	4	75	47	16	1	35	1.56
34324595--34324654	21	2.9	21	75	9	59	50	8	0	41	1.33
34324630--34324656	7	3.9	7	100	0	54	44	0	0	55	0.99
34326731--34326840	32	3.5	31	70	5	87	36	17	26	20	1.94
34326882--34326969	28	3.2	28	74	9	72	39	21	25	13	1.90
34327230--34327342	45	2.5	45	83	0	154	40	18	25	15	1.89
34327147--34327319	73	2.3	72	83	2	202	39	18	25	16	1.91
34327164--34327387	118	1.9	118	85	0	313	41	20	24	13	1.89
34333245--34333300	28	2.0	28	92	0	94	35	25	28	10	1.89
34336682--34336743	23	2.6	23	75	14	56	61	3	1	33	1.22
34336775--34336826	20	2.7	19	82	5	59	38	3	13	44	1.62
34336977--34337028	20	2.6	19	75	6	50	38	1	13	46	1.54
34337512--34337550	10	3.8	10	86	13	53	20	0	2	76	0.90
34337500--34337555	20	2.5	23	72	24	57	26	0	1	71	0.96
34348536--34348576	19	2.1	20	86	4	57	48	2	2	46	1.28
34360180--34360325	75	1.9	75	94	0	256	21	18	21	39	1.93
34361041--34361164	30	4.1	30	92	1	194	25	24	5	44	1.75
34361051--34361155	15	7.0	15	66	12	72	25	22	6	44	1.77
34365677--34365800	30	4.1	30	92	1	194	25	24	5	44	1.75
34365687--34365791	15	7.0	15	66	12	72	25	22	6	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34368845--34369243	207	1.9	206	92	4	669	26	21	19	33	1.97
34369473--34369535	27	2.5	24	70	22	65	1	34	4	58	1.29
34372348--34372387	17	2.4	17	79	4	55	27	32	20	20	1.97
34374056--34374083	14	2.0	14	100	0	56	42	35	7	14	1.73
34392426--34392456	15	2.1	15	93	0	53	32	25	3	38	1.72
34403590--34403675	43	2.0	43	100	0	172	39	20	6	32	1.80
34417277--34417305	6	4.8	6	100	0	58	34	0	13	51	1.42
34424976--34425020	19	2.3	19	84	3	54	53	11	0	35	1.37
34428193--34428253	29	2.1	29	81	0	68	45	8	16	29	1.76
34431881--34431905	2	12.5	2	100	0	50	48	0	0	52	1.00
34442384--34442659	46	6.0	46	90	3	398	29	24	9	37	1.86
34442384--34442659	137	2.0	138	90	2	430	29	24	9	37	1.86
34448901--34448956	16	3.4	16	80	5	58	23	3	3	69	1.20
34450749--34450788	13	3.2	13	85	3	55	70	2	2	25	1.13
34454257--34454294	17	2.2	18	86	13	53	23	2	2	71	1.12
34455439--34455509	16	4.3	17	73	10	58	64	1	1	32	1.11
34455472--34455507	8	4.5	8	96	0	54	72	0	0	27	0.85
34455454--34455510	16	3.5	17	79	11	66	64	1	0	33	1.04
34455546--34455570	7	3.6	7	100	0	50	72	0	0	28	0.86
34458576--34458606	15	2.1	15	94	5	55	48	0	0	51	1.00
34471742--34471782	14	2.9	14	81	0	55	46	12	4	36	1.63
34475630--34475654	7	3.6	7	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34478907--34479020	56	2.0	56	100	0	228	31	8	22	36	1.85
34479064--34479115	23	2.3	23	87	6	72	9	13	11	65	1.47
34499775--34499816	16	2.7	15	82	7	57	11	7	11	69	1.37
34502363--34502397	18	1.9	18	94	0	61	62	5	0	31	1.18
34535572--34535637	14	4.8	14	76	7	55	56	9	4	30	1.51
34535773--34535833	6	10.2	6	96	0	113	34	0	14	50	1.43
34536016--34536061	24	1.9	24	82	8	58	58	0	8	32	1.28
34536023--34536092	27	2.6	28	84	8	83	57	0	10	32	1.32
34537587--34537805	89	2.5	89	83	1	287	27	26	17	28	1.97
34537584--34538213	133	4.7	133	77	4	599	28	23	17	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172