genome.fa.s22.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  112  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32166223--32166282	10	6.2	10	75	11	54	25	3	0	71	1.01
32166408--32166582	90	2.0	90	89	3	273	30	9	23	36	1.87
32166409--32166616	90	2.4	84	83	11	246	28	9	22	39	1.84
32167090--32167600	108	4.7	109	89	2	773	34	19	16	29	1.94
32167090--32167596	217	2.3	218	93	0	854	33	19	16	29	1.94
32168030--32168098	3	22.7	3	80	14	79	62	0	2	34	1.10
32169840--32170121	129	2.2	129	94	0	492	29	21	18	30	1.97
32169891--32170118	44	5.2	44	69	13	123	29	21	17	31	1.97
32181784--32182316	108	4.9	108	90	3	795	33	18	17	30	1.94
32181806--32182312	217	2.3	218	95	0	890	33	19	17	30	1.95
32182647--32182683	16	2.3	16	90	0	56	59	0	0	40	0.97
32182745--32182787	21	2.0	21	82	8	52	62	2	2	32	1.20
32184524--32184557	16	2.2	15	89	5	50	73	0	0	26	0.83
32190575--32191240	232	2.8	234	83	6	809	33	10	20	35	1.86
32192677--32192928	96	2.6	96	83	3	303	27	33	15	24	1.95
32194973--32195043	36	2.0	36	100	0	142	53	11	8	26	1.65
32196040--32196111	31	2.3	31	82	0	90	31	15	9	43	1.79
32196464--32196524	31	2.0	31	96	0	113	44	9	9	36	1.71
32199870--32199926	30	1.9	30	86	10	82	29	3	12	54	1.54
32202737--32202920	92	2.0	92	98	0	359	34	14	21	28	1.93
32203648--32203708	23	2.6	26	70	21	62	60	0	0	39	0.97
32218733--32218796	30	2.2	29	81	10	76	29	28	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32218740--32218796	30	1.9	30	85	3	80	29	24	7	38	1.82
32225816--32225879	30	2.2	29	81	10	76	29	28	6	35	1.82
32225823--32225879	30	1.9	30	85	3	80	29	24	7	38	1.82
32230312--32230379	18	3.1	22	68	22	54	50	1	4	44	1.31
32230301--32230390	42	2.1	43	86	8	123	48	2	4	44	1.35
32233856--32233956	38	2.7	38	85	0	139	35	20	11	31	1.89
32234895--32234938	19	2.3	19	80	15	54	38	0	0	61	0.96
32235881--32235982	25	4.3	25	80	10	99	16	24	20	38	1.93
32235926--32235983	22	2.6	22	83	5	73	15	24	18	41	1.89
32236074--32236132	31	1.9	31	92	0	100	52	3	22	22	1.61
32237204--32237256	23	2.2	24	87	9	74	58	0	0	41	0.98
32237278--32237322	23	2.0	23	90	0	72	48	8	11	31	1.69
32238690--32238771	43	1.9	43	89	0	128	45	13	9	31	1.76
32240864--32240888	6	4.2	6	100	0	50	16	0	0	84	0.63
32241688--32241720	16	1.9	18	88	11	52	66	0	9	24	1.20
32241961--32242014	22	2.4	23	72	6	58	48	0	1	50	1.11
32241997--32242068	30	2.4	30	79	9	83	54	5	0	40	1.24
32244255--32244299	14	2.9	15	84	12	56	28	2	0	68	1.01
32244271--32244334	26	2.5	25	76	14	67	39	0	0	60	0.97
32245788--32245873	9	10.2	8	82	15	79	0	25	0	74	0.82
32245821--32245874	3	18.0	3	88	7	83	0	31	0	68	0.90
32251060--32251123	32	2.0	32	88	11	96	3	15	15	65	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32251546--32251589	5	8.8	5	83	16	56	84	15	0	0	0.63
32251545--32251589	15	2.9	15	84	15	65	84	15	0	0	0.62
32257846--32257900	21	2.5	21	82	5	65	29	16	18	36	1.92
32257862--32258158	91	3.3	90	81	2	364	31	21	15	31	1.94
32262429--32262476	24	2.0	24	87	0	69	39	8	18	33	1.81
32264111--32264172	13	4.8	13	75	0	61	33	9	24	32	1.88
32264570--32264622	20	2.5	21	75	6	54	58	13	1	26	1.45
32268548--32268786	72	3.3	72	92	4	394	55	15	5	23	1.60
32271542--32271576	17	2.0	17	88	5	52	60	0	0	40	0.97
32271942--32271977	14	2.5	14	86	4	54	52	2	0	44	1.15
32273281--32273321	16	2.6	16	88	0	55	34	0	2	63	1.08
32275637--32275679	20	2.2	19	84	12	52	58	4	2	34	1.32
32276538--32276568	14	2.2	14	94	0	53	48	35	0	16	1.46
32277601--32277632	17	1.9	17	93	6	57	68	3	9	18	1.30
32277813--32278100	42	6.9	42	89	2	418	32	21	21	23	1.98
32277813--32278100	85	3.4	85	88	2	429	32	21	21	23	1.98
32278070--32278127	28	2.1	28	93	0	98	22	25	24	27	2.00
32278098--32278223	41	3.0	42	87	3	164	26	20	18	34	1.95
32278540--32278610	21	3.4	21	80	0	79	2	45	18	33	1.64
32284060--32284350	7	34.0	9	63	33	87	33	0	20	46	1.51
32284105--32284498	26	15.8	25	89	5	561	32	0	20	46	1.53
32284419--32284462	18	2.4	18	92	0	79	34	2	18	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32284496--32284786	73	4.0	73	99	0	566	40	6	1	50	1.39
32284936--32285006	13	5.5	13	86	0	106	50	2	7	39	1.44
32284935--32285006	26	2.8	26	100	0	144	50	2	6	40	1.44
32285011--32285166	17	8.6	17	75	22	131	41	1	12	45	1.49
32284978--32285175	57	3.5	57	94	2	346	43	2	10	43	1.50
32286509--32286548	11	3.7	11	93	3	64	27	27	10	35	1.89
32287531--32287731	84	2.4	83	93	2	330	29	17	19	32	1.95
32288117--32288142	12	2.2	12	100	0	52	19	34	7	38	1.80
32288750--32289333	111	5.3	111	94	0	983	26	28	19	25	1.99
32289281--32289397	40	2.9	40	94	0	198	20	29	16	33	1.94
32290938--32290987	21	2.4	21	79	0	55	16	38	30	16	1.90
32337952--32338759	44	18.4	44	79	4	776	29	15	25	29	1.96
32337952--32338759	132	6.1	132	84	3	1002	29	15	25	29	1.96
32339242--32339298	23	2.5	22	86	8	71	38	40	7	14	1.73
32347553--32347609	22	2.6	22	91	0	87	33	17	35	14	1.90
32349935--32349986	24	2.2	24	89	0	77	36	3	9	50	1.54
32358801--32358903	51	2.0	51	92	3	172	37	2	26	33	1.71
32360602--32360662	19	3.1	19	69	21	54	39	1	16	42	1.58
32365528--32365613	11	7.6	11	73	18	61	61	0	3	34	1.13
32365542--32365618	32	2.4	32	91	6	120	62	0	3	33	1.14
32374109--32374213	21	5.1	20	73	14	61	46	16	20	17	1.84
32381224--32381250	13	2.1	13	100	0	54	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32381804--32381848	3	15.0	3	85	0	63	31	4	2	62	1.27
32387970--32388908	88	10.6	88	85	3	1274	25	24	26	23	2.00
32387971--32388284	44	7.1	44	65	11	151	26	26	25	21	1.99
32388653--32388879	44	5.2	44	67	16	155	22	23	28	25	1.99
32390312--32390363	21	2.5	21	90	0	86	28	3	3	63	1.30
32390312--32390363	3	17.3	3	83	0	68	28	3	3	63	1.30
32391803--32391835	15	2.1	16	88	5	50	27	3	0	69	1.03
32394234--32394285	24	2.2	24	89	0	77	34	3	7	53	1.48
32397211--32397251	22	1.9	21	85	5	55	63	12	0	24	1.28
32397486--32397533	18	2.8	18	81	6	55	58	2	2	37	1.22
32400155--32400216	22	2.9	21	81	13	81	14	11	48	25	1.77
32400921--32401706	72	10.7	72	75	14	583	34	19	16	29	1.93
32400921--32401692	145	5.3	146	74	14	622	33	19	16	30	1.94
32401585--32401832	122	2.0	125	83	5	317	37	19	14	28	1.91
32401710--32401886	72	2.5	72	84	6	211	33	22	14	30	1.93
32410073--32410116	16	2.7	16	89	10	63	40	6	25	27	1.80
32415083--32415141	22	2.7	22	86	0	82	15	10	50	23	1.74
32415977--32416019	22	2.0	22	95	0	77	44	9	6	39	1.64
32417517--32417555	18	2.1	19	90	4	62	25	17	15	41	1.89
32424108--32424383	87	3.2	87	88	1	367	23	20	18	38	1.94
32426192--32426358	25	6.8	24	72	10	115	43	13	9	34	1.76
32435206--32435247	21	2.0	21	90	4	68	2	11	11	73	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32436429--32436479	3	17.0	3	100	0	102	66	0	0	33	0.92
32439030--32439069	21	1.9	21	84	0	53	20	10	5	65	1.42
32439740--32440084	179	1.9	179	88	0	519	31	25	18	24	1.98
32443626--32443817	45	4.3	45	78	10	180	35	16	17	30	1.93
32443672--32443862	90	2.1	89	86	0	256	34	18	17	29	1.94
32446351--32446696	44	7.9	43	76	6	230	33	15	20	29	1.94
32446351--32446886	95	5.9	88	74	9	389	34	16	19	29	1.94
32446357--32446642	89	3.3	88	80	7	244	32	15	22	29	1.95
32446357--32446696	133	2.6	132	82	4	384	33	15	21	29	1.94
32446650--32446850	51	4.1	51	70	8	173	36	16	16	29	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172