genome.fa.s22.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  155  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45147840--45148417	153	3.8	150	84	6	689	30	8	7	52	1.61
45149755--45149803	18	2.5	20	87	9	66	40	4	2	53	1.32
45155308--45155359	23	2.3	23	89	0	77	42	19	7	30	1.79
45169545--45169827	102	2.8	102	89	2	408	28	15	25	30	1.96
45169549--45169972	153	2.9	145	82	9	447	29	16	25	29	1.97
45169545--45169972	102	4.3	99	79	12	400	29	16	25	28	1.97
45169545--45169972	51	8.7	49	75	12	353	29	16	25	28	1.97
45169819--45169876	19	3.1	19	97	0	107	31	24	27	17	1.97
45169857--45169972	50	2.3	51	95	4	209	30	18	25	26	1.98
45176950--45176993	19	2.4	19	84	3	54	40	2	6	50	1.42
45176961--45177008	19	2.4	20	89	6	71	37	0	8	54	1.31
45183129--45183161	16	2.0	17	88	5	50	45	0	0	54	0.99
45183486--45183536	21	2.5	20	76	17	59	41	9	0	49	1.36
45183493--45183536	22	2.0	23	90	4	72	38	9	0	52	1.33
45185880--45186104	112	2.0	112	98	0	432	41	16	8	34	1.78
45190356--45190380	5	5.0	5	100	0	50	0	0	20	80	0.72
45201751--45201922	86	2.0	86	93	2	292	36	20	5	37	1.77
45207595--45207702	56	1.9	56	98	0	207	40	8	4	46	1.55
45211541--45211632	44	2.1	44	93	0	157	27	11	36	23	1.90
45218804--45218838	14	2.4	14	95	4	61	8	25	0	65	1.21
45218783--45218828	19	2.6	18	83	16	60	6	26	0	67	1.15
45219519--45219578	19	3.1	19	88	9	68	30	5	25	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45219532--45219578	19	2.4	19	96	3	85	29	4	21	44	1.71
45221348--45221379	16	1.9	17	93	6	57	53	0	0	46	1.00
45221372--45221594	61	3.6	62	71	15	203	42	2	5	49	1.39
45221334--45221626	120	2.4	120	92	2	482	43	2	4	49	1.35
45221459--45221500	15	2.9	15	82	10	52	47	0	0	52	1.00
45221575--45221609	18	2.0	17	88	5	52	45	0	0	54	0.99
45221563--45221837	147	1.9	149	95	1	500	46	2	3	46	1.35
45221723--45221756	18	1.9	17	88	5	50	41	0	2	55	1.15
45221993--45222060	16	4.2	16	96	0	118	35	36	0	27	1.58
45230065--45230153	27	3.2	27	68	6	88	49	4	15	30	1.65
45230076--45230171	29	3.4	29	69	5	97	44	6	14	34	1.70
45230067--45230179	56	2.0	56	100	0	226	46	7	14	32	1.71
45242396--45242433	20	1.9	20	84	10	51	57	5	5	31	1.43
45242465--45242535	37	1.9	37	91	0	115	45	4	9	40	1.57
45242643--45242671	3	9.7	3	100	0	58	68	31	0	0	0.89
45242670--45242715	3	15.3	3	100	0	92	67	0	0	32	0.91
45244487--45244522	17	2.1	17	100	0	72	44	19	11	25	1.83
45245924--45245973	25	2.0	25	88	0	73	24	18	16	42	1.89
45248837--45248896	30	2.0	30	90	0	93	26	20	13	40	1.89
45255642--45255729	37	2.4	37	98	0	167	27	42	0	30	1.56
45268801--45269067	103	2.6	104	89	4	423	19	20	30	30	1.97
45274893--45274938	19	2.4	20	79	17	53	65	2	30	2	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45275345--45275389	23	2.0	22	82	4	54	51	33	2	13	1.53
45276071--45276096	10	2.6	10	100	0	52	0	23	0	76	0.78
45278876--45278923	7	6.9	7	97	0	87	39	0	16	43	1.48
45279970--45280004	17	2.1	17	88	0	52	54	2	0	42	1.15
45280002--45280047	20	2.4	20	78	7	51	28	0	10	60	1.30
45280686--45280745	19	3.0	21	83	11	65	35	1	3	60	1.23
45281179--45281222	20	2.2	21	84	8	56	36	2	2	59	1.23
45284067--45284139	35	2.1	35	100	0	146	49	5	8	36	1.56
45285374--45285445	9	7.6	9	76	11	72	40	27	8	23	1.83
45285373--45285445	20	3.8	19	75	13	78	41	27	8	23	1.82
45285373--45285445	29	2.5	29	90	0	128	41	27	8	23	1.82
45285446--45285558	37	3.1	37	93	1	192	46	15	5	32	1.68
45285469--45285532	20	3.3	20	68	12	62	45	15	4	34	1.67
45285489--45285549	17	3.4	17	68	12	50	50	13	3	32	1.57
45296469--45296528	26	2.3	27	79	5	68	61	11	1	25	1.39
45297600--45297634	2	17.5	2	93	0	61	45	51	0	2	1.16
45299160--45299210	17	3.0	17	82	0	57	43	5	17	33	1.73
45299579--45299894	152	2.1	152	87	1	454	24	25	31	19	1.98
45305484--45305614	61	2.1	62	90	1	201	30	9	8	51	1.63
45308795--45308929	61	2.2	61	79	13	145	49	4	5	40	1.45
45308916--45308953	7	5.3	7	93	3	58	60	0	0	39	0.97
45309892--45309925	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45314531--45314564	17	2.0	17	94	0	59	44	50	0	5	1.26
45322886--45322943	22	2.5	23	86	8	75	48	0	1	50	1.11
45328318--45328365	24	2.0	24	84	8	62	37	6	8	47	1.59
45344955--45345006	18	2.9	18	77	8	52	67	3	1	26	1.18
45344929--45345004	20	3.8	20	73	13	57	63	3	2	30	1.26
45354363--45354461	51	1.9	51	97	0	189	39	13	19	28	1.89
45354904--45355457	277	2.0	275	99	0	1090	35	18	12	33	1.89
45355656--45355695	20	2.0	20	90	0	62	27	10	12	50	1.72
45355641--45355707	34	1.9	35	90	3	109	31	8	13	46	1.74
45355635--45355711	14	5.0	15	71	20	52	33	9	14	42	1.77
45355697--45355776	33	2.5	32	78	8	90	28	11	16	43	1.82
45356129--45356156	13	2.2	13	100	0	56	32	0	14	53	1.41
45360666--45360716	18	2.8	18	75	0	66	39	3	43	13	1.63
45361119--45361173	28	1.9	28	85	3	74	40	0	1	58	1.09
45362373--45362416	22	2.0	22	100	0	88	36	9	13	40	1.76
45363777--45363822	21	2.2	21	84	7	58	17	6	2	73	1.14
45365370--45365403	17	1.9	18	88	5	52	38	2	2	55	1.30
45373450--45373474	7	3.6	7	100	0	50	88	0	0	12	0.53
45378983--45379043	29	2.1	28	85	8	79	45	14	14	24	1.83
45383523--45383654	40	3.4	40	72	10	110	40	16	18	25	1.91
45383519--45383745	77	2.9	77	79	0	211	40	16	18	25	1.90
45384097--45384153	22	2.6	22	83	8	64	35	3	1	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45384823--45384880	23	2.6	22	81	10	73	15	13	17	53	1.73
45394832--45394884	23	2.4	22	84	6	72	18	9	13	58	1.61
45411562--45411615	3	17.7	3	79	7	56	61	1	3	33	1.25
45418437--45418571	41	3.4	40	81	5	125	25	17	24	33	1.96
45431678--45431727	5	9.6	5	95	4	82	40	0	0	60	0.97
45432290--45432347	30	1.9	30	89	0	89	41	3	24	31	1.71
45432559--45432590	13	2.5	13	94	0	55	31	0	12	56	1.37
45432685--45432926	50	4.7	50	85	4	288	26	24	28	19	1.99
45432685--45432934	100	2.4	103	87	6	355	26	24	28	20	1.99
45436619--45436651	15	2.2	15	100	0	66	24	24	15	36	1.93
45443472--45443521	17	2.7	20	78	18	70	10	0	44	46	1.37
45448111--45448160	17	2.7	20	78	18	70	10	0	44	46	1.37
45461520--45461552	3	11.3	3	93	6	59	36	0	63	0	0.95
45461551--45461611	3	20.3	3	81	9	72	62	1	34	1	1.15
45467079--45467162	44	1.9	44	95	0	150	40	20	3	35	1.70
45468551--45468812	88	2.9	87	81	7	272	36	5	12	44	1.67
45476491--45476523	14	2.3	15	89	5	50	81	6	3	9	0.95
45476559--45476628	27	2.6	27	79	4	79	18	32	35	12	1.89
45476690--45476815	4	31.8	4	71	20	52	69	0	30	0	0.88
45476697--45476812	10	11.3	10	65	18	60	69	0	30	0	0.88
45476688--45476814	14	8.4	14	70	16	76	70	0	29	0	0.88
45476700--45476812	30	3.7	29	76	19	113	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45476684--45476786	38	2.8	37	80	11	129	69	0	30	0	0.88
45476687--45476815	34	3.9	33	78	15	126	68	0	31	0	0.89
45479061--45479091	12	2.6	12	94	0	53	32	45	22	0	1.53
45487472--45487522	15	3.5	15	69	15	52	27	3	9	58	1.47
45497960--45498027	9	7.2	9	73	8	55	69	4	0	26	1.07
45497966--45498027	28	2.2	28	94	2	106	69	4	0	25	1.08
45497960--45498009	20	2.7	18	79	17	57	70	4	0	26	1.05
45500855--45500890	13	2.8	13	87	4	56	75	0	0	25	0.81
45500853--45500901	14	3.0	18	69	25	54	73	0	0	26	0.83
45504566--45504625	20	3.0	20	82	9	68	43	1	0	55	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172