genome.fa.s22.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  50  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13422977--13423078	43	2.4	42	85	9	136	28	33	15	22	1.95
13424915--13424994	37	2.1	38	84	6	101	27	28	17	26	1.98
13425162--13425485	46	7.0	47	93	5	554	30	29	8	32	1.87
13432321--13432364	23	2.0	23	90	4	72	31	15	13	38	1.87
13432353--13432687	110	3.1	104	81	9	379	32	8	17	41	1.79
13432599--13432642	17	2.6	16	79	10	52	40	0	18	40	1.50
13440125--13440171	21	2.2	22	81	11	53	34	4	10	51	1.56
13442794--13442828	18	2.0	18	88	5	54	34	14	2	48	1.58
13448454--13448649	41	4.8	41	93	3	315	29	21	22	27	1.99
13448863--13448959	33	2.8	33	84	7	106	29	10	22	37	1.87
13454565--13454589	13	1.9	13	100	0	50	8	0	24	68	1.16
13455647--13455843	41	4.8	41	92	5	317	28	20	22	27	1.99
13456060--13456123	32	2.0	31	90	3	101	28	9	23	39	1.86
13457395--13457420	10	2.6	10	100	0	52	42	0	0	57	0.98
13461230--13461301	37	2.0	37	89	8	112	25	18	26	30	1.98
13464132--13464177	22	2.1	22	100	0	92	26	8	23	41	1.83
13471206--13471288	41	2.0	41	100	0	166	37	36	12	14	1.83
13472061--13472148	36	2.4	37	90	3	135	54	22	3	19	1.59
13479210--13479355	50	2.9	50	83	3	168	29	28	19	22	1.98
13484768--13484846	7	11.1	7	72	22	67	82	1	12	3	0.87
13484770--13484836	5	13.8	5	75	20	54	82	1	13	2	0.86
13484768--13484821	20	2.9	19	89	10	78	83	0	14	1	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13484769--13484822	6	8.8	6	74	25	51	83	0	14	1	0.73
13485728--13486166	44	9.7	44	72	11	289	30	18	21	29	1.97
13486004--13486258	88	2.9	88	77	12	213	30	18	21	29	1.97
13486049--13486265	88	2.4	91	81	10	232	30	17	22	29	1.97
13488017--13488054	17	2.2	18	85	4	51	57	2	5	34	1.35
13488102--13488170	21	3.1	21	78	17	77	57	1	5	34	1.31
13488013--13488245	24	10.3	23	70	17	116	55	3	7	33	1.44
13488605--13488656	27	2.0	26	81	11	61	65	0	13	21	1.26
13489087--13489131	22	2.0	23	86	4	65	33	17	6	42	1.76
13489110--13489163	19	2.8	19	85	0	81	29	18	12	38	1.88
13489372--13489403	15	2.1	15	100	0	64	12	6	0	81	0.87
13493240--13493338	9	11.0	9	74	10	78	36	1	17	45	1.55
13493240--13493329	36	2.5	36	98	0	171	36	0	16	46	1.47
13493390--13493415	13	2.0	13	100	0	52	38	0	0	61	0.96
13494037--13494070	13	2.6	13	100	0	68	32	0	0	67	0.91
13495165--13495193	13	2.1	14	93	6	51	55	6	3	34	1.44
13497125--13497150	9	2.9	9	100	0	52	76	0	0	23	0.78
13497406--13497552	48	3.0	48	86	8	201	44	8	28	18	1.78
13497614--13497729	40	2.9	40	86	1	151	23	24	13	38	1.91
13497668--13497754	41	2.1	41	82	2	102	20	21	12	44	1.85
13499946--13499979	15	2.3	15	90	10	52	32	2	2	61	1.26
13499961--13500003	21	2.0	21	81	0	50	37	4	0	58	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13504967--13505013	24	1.9	24	86	4	67	36	0	38	25	1.56
13512511--13512697	27	7.0	28	77	10	142	37	17	21	23	1.93
13512527--13512724	27	7.4	27	80	5	118	37	17	20	24	1.93
13512526--13512718	107	1.8	107	85	4	273	36	17	21	24	1.94
13512631--13512736	27	3.9	27	86	2	133	33	16	22	27	1.96
13512526--13512736	54	3.9	54	76	7	189	36	18	20	24	1.95
13512771--13512834	23	2.7	23	87	2	83	18	4	25	51	1.65
13512772--13512853	24	3.5	23	83	5	92	20	4	24	50	1.68
13513000--13513114	32	3.6	32	81	6	126	15	19	25	40	1.91
13513131--13513181	21	2.4	21	80	3	57	17	17	17	47	1.84
13531062--13531098	15	2.5	15	95	0	65	10	27	27	35	1.90
13536997--13537051	22	2.5	22	78	18	62	21	5	5	67	1.32
13537517--13537545	15	1.9	15	100	0	58	51	27	13	6	1.66
13544596--13544776	29	6.5	26	79	6	112	24	16	23	35	1.95
13544650--13544833	29	6.4	28	73	17	146	28	15	21	34	1.94
13544639--13544833	58	3.4	55	80	10	189	29	14	21	33	1.94
13544651--13544819	87	2.0	86	80	12	195	30	14	21	33	1.93
13546435--13546467	16	2.1	16	100	0	66	39	24	12	24	1.89
13548804--13548932	26	4.9	27	69	11	97	21	28	14	34	1.93
13548809--13548930	52	2.3	52	84	2	154	21	29	13	35	1.92
13561838--13562030	51	3.9	49	73	6	156	29	27	18	24	1.98
13561892--13562025	49	2.7	51	78	2	155	30	28	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13567649--13567726	29	2.7	28	84	11	104	25	15	30	28	1.96
13567679--13568005	173	1.9	174	94	0	575	30	14	24	31	1.94
13575784--13575861	29	2.7	28	84	11	104	25	15	30	28	1.96
13575814--13576140	173	1.9	174	94	0	575	30	14	24	31	1.94
13576861--13576910	23	2.2	23	100	0	100	40	8	18	34	1.79
13580348--13580383	18	2.0	18	88	0	54	27	33	11	27	1.91
13580806--13580830	12	2.1	12	100	0	50	44	24	0	32	1.54
13587304--13587764	27	17.2	26	85	7	491	19	16	20	42	1.89
13587308--13587764	81	5.7	79	84	5	542	19	16	21	42	1.89
13590072--13590110	16	2.4	16	86	0	51	23	41	0	35	1.55
13590081--13590112	16	2.0	16	93	0	55	18	40	0	40	1.51
13596539--13596582	18	2.5	18	85	3	54	18	27	38	15	1.91
13603663--13603711	21	2.3	21	85	0	62	18	32	24	24	1.97
13617957--13617992	18	1.9	19	88	5	56	58	8	16	16	1.61
13619289--13619492	41	5.0	41	80	2	158	20	25	15	38	1.92
13619288--13619492	82	2.5	82	80	2	241	20	25	15	38	1.92
13622611--13622635	9	2.8	9	100	0	50	12	24	20	44	1.85
13624424--13624453	15	2.0	15	93	0	51	36	6	33	23	1.81
13641115--13641153	16	2.5	15	83	8	51	46	0	0	53	1.00
13646816--13646960	24	6.0	24	74	8	132	33	21	28	15	1.94
13654409--13654553	24	5.9	24	72	14	109	34	20	24	20	1.96
13654409--13654551	49	2.9	49	80	11	150	34	20	25	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13654359--13654609	73	3.4	73	73	11	172	33	18	26	22	1.97
13655785--13656070	42	6.7	42	85	5	353	23	16	23	36	1.95
13655777--13656065	128	2.3	125	86	5	402	23	16	23	36	1.94
13661341--13661365	13	1.9	13	100	0	50	24	8	4	64	1.38
13662360--13662498	32	4.4	32	85	0	163	37	20	20	22	1.94
13662555--13662605	27	1.9	27	84	4	68	31	23	27	17	1.97
13662670--13662736	24	2.8	24	88	0	98	47	20	5	25	1.73
13662707--13662777	23	3.0	23	80	12	72	42	19	9	28	1.83
13662708--13662779	24	3.0	24	80	11	85	41	20	9	27	1.84
13662811--13662962	27	5.8	26	77	6	135	21	15	21	41	1.90
13662796--13662913	52	2.2	53	80	5	132	21	20	20	38	1.94
13662816--13662962	26	5.6	26	75	8	129	21	15	19	42	1.88
13667137--13667210	32	2.3	32	86	4	105	6	31	35	27	1.83
13673774--13673870	48	2.0	48	91	0	158	43	19	17	19	1.88
13674072--13674135	17	3.6	17	74	15	67	46	14	12	26	1.79
13674090--13674143	17	2.9	19	71	20	60	46	16	12	24	1.82
13674073--13674143	36	2.0	36	97	0	133	46	15	12	25	1.81
13678908--13679002	48	2.0	48	91	0	154	43	23	15	17	1.88
13679206--13679269	17	3.6	17	74	15	67	46	14	12	26	1.79
13679224--13679277	17	2.9	19	71	20	60	46	16	12	24	1.82
13679207--13679277	36	2.0	36	97	0	133	46	15	12	25	1.81
13683333--13683364	16	2.0	16	93	0	55	9	6	18	65	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13687578--13687610	15	2.2	15	94	0	57	63	12	0	24	1.28
13687617--13687657	13	3.2	13	86	10	57	78	7	0	14	0.96
13687938--13688002	28	2.4	27	82	5	78	60	4	6	29	1.41
13689230--13689271	17	2.5	17	92	0	66	2	19	38	40	1.64
13690912--13690966	27	2.0	27	92	0	92	40	14	14	30	1.86
13696386--13696423	20	1.9	20	94	0	67	36	5	5	52	1.47
13696384--13696433	20	2.5	20	83	6	66	36	4	4	56	1.37
13697754--13697813	31	1.9	31	83	6	77	36	5	11	46	1.62
13702516--13702555	20	2.0	20	85	5	53	60	5	0	35	1.19
13703292--13703325	16	2.3	14	90	10	50	0	0	14	85	0.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172