genome.fa.s22.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  157  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45914951--45914985	11	3.2	11	95	0	61	25	2	0	71	1.00
45915434--45915458	13	1.9	13	100	0	50	8	0	24	68	1.16
45917034--45917137	41	2.5	41	92	0	163	26	20	28	24	1.99
45917851--45917895	20	2.2	20	100	0	90	22	0	20	57	1.40
45925083--45925135	21	2.5	21	90	0	79	32	39	7	20	1.81
45926078--45926126	22	2.2	22	88	0	71	51	0	6	42	1.27
45926311--45926373	28	2.2	28	88	5	92	46	3	0	50	1.17
45926462--45926510	24	2.0	26	84	8	66	61	4	2	32	1.26
45928281--45928317	14	2.4	17	86	13	53	48	0	0	51	1.00
45928467--45928517	14	3.6	14	74	7	50	68	0	13	17	1.21
45928506--45928539	16	2.1	16	88	5	50	76	5	14	2	1.09
45929418--45929460	22	2.0	22	86	9	61	44	0	23	32	1.54
45929630--45929725	39	2.5	39	80	6	108	20	23	28	27	1.99
45942826--45942868	18	2.4	18	84	7	61	41	0	0	58	0.98
45942842--45942869	14	2.0	14	100	0	56	42	0	0	57	0.99
45951797--45951823	2	13.5	2	100	0	54	51	0	0	48	1.00
45958346--45958430	28	3.0	28	96	3	154	38	8	0	52	1.31
45958431--45958467	16	2.3	17	86	9	51	83	8	2	5	0.88
45958616--45958698	18	4.7	18	75	14	68	66	1	32	0	1.00
45958626--45958699	14	5.1	13	71	25	51	68	1	29	0	0.97
45958616--45958732	38	3.2	37	80	16	129	64	0	33	0	1.05
45958643--45958705	10	6.5	10	71	14	51	66	1	31	0	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45958671--45958732	18	3.3	18	76	8	61	66	0	32	1	1.02
45959466--45959502	19	1.9	19	88	0	56	27	0	5	67	1.12
45959553--45959619	27	2.5	27	90	2	109	41	8	1	47	1.44
45960942--45960977	17	2.1	17	100	0	72	30	16	5	47	1.70
45964352--45964389	18	2.1	18	90	0	58	15	44	5	34	1.69
45964355--45964396	18	2.3	18	83	0	57	21	47	2	28	1.63
45965558--45965588	16	1.9	16	93	0	53	9	3	0	87	0.66
45965590--45965651	26	2.4	27	83	5	83	53	1	1	43	1.20
45968281--45968332	16	3.1	17	78	10	54	50	5	1	42	1.37
45968870--45968910	19	2.2	19	86	0	55	41	7	9	41	1.66
45974937--45974971	19	1.9	17	88	11	52	45	0	0	54	0.99
45977108--45977171	31	2.1	30	82	8	76	62	4	0	32	1.16
45977126--45977176	23	2.3	22	82	3	66	64	3	0	31	1.11
45977527--45977590	17	3.7	17	74	12	67	23	3	4	68	1.23
45980417--45980483	31	2.2	30	86	5	100	46	5	8	38	1.60
45985857--45985898	21	2.0	21	85	0	57	35	14	2	47	1.57
45990789--45990814	6	4.3	6	100	0	52	19	30	0	50	1.48
46004475--46004499	3	8.3	3	100	0	50	68	0	0	32	0.90
46006049--46006092	24	1.9	24	81	9	56	45	6	4	43	1.51
46008688--46008739	17	3.1	16	86	5	68	28	1	1	67	1.12
46014751--46014888	45	3.0	45	73	15	131	31	19	21	26	1.97
46019250--46019432	46	4.0	46	89	2	260	27	26	8	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46028221--46028292	31	2.3	32	81	11	87	51	9	12	26	1.70
46028241--46028318	31	2.6	30	83	4	93	55	11	11	21	1.67
46031618--46031646	7	4.1	7	100	0	58	13	0	0	86	0.58
46032294--46032358	30	2.2	29	76	12	71	21	18	3	56	1.54
46044930--46045467	44	12.4	44	70	13	224	30	19	21	28	1.98
46044922--46045261	129	2.6	127	88	2	475	30	18	22	28	1.98
46045051--46045519	175	2.7	173	90	2	705	31	18	21	28	1.97
46050859--46050902	22	2.0	22	100	0	88	45	9	9	36	1.68
46050864--46050910	22	2.2	22	88	3	69	48	10	12	27	1.74
46055052--46055127	23	3.3	23	96	0	143	31	26	21	21	1.98
46055214--46055242	8	3.6	8	100	0	58	34	27	13	24	1.93
46055347--46055385	18	2.2	17	86	13	53	46	20	0	33	1.51
46062387--46062462	23	3.3	23	96	0	143	31	26	21	21	1.98
46062549--46062577	8	3.6	8	100	0	58	34	27	13	24	1.93
46062682--46062720	18	2.2	17	86	13	53	46	20	0	33	1.51
46067676--46067748	30	2.4	30	84	8	87	39	0	0	60	0.97
46068612--46068651	21	1.9	21	85	10	55	47	0	0	52	1.00
46068955--46068997	19	2.1	21	87	8	63	23	9	9	58	1.58
46080992--46081020	15	1.9	15	100	0	58	82	6	0	10	0.83
46088437--46088502	30	2.1	32	83	5	82	28	10	9	51	1.67
46094734--46094770	13	2.5	15	87	12	51	40	0	5	54	1.24
46095503--46095544	21	2.0	21	85	4	57	35	4	4	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46095619--46095655	18	2.0	19	89	5	58	45	0	8	45	1.32
46098082--46098133	26	2.0	26	92	0	86	28	34	21	15	1.94
46098094--46098244	72	2.1	71	91	2	241	30	29	16	23	1.96
46098163--46098386	104	2.2	104	93	1	378	31	31	19	17	1.95
46098715--46098778	30	2.2	29	81	10	76	29	28	6	35	1.82
46098722--46098778	30	1.9	30	85	3	80	29	24	7	38	1.82
46105691--46105914	104	2.2	104	93	1	378	31	31	19	17	1.95
46106243--46106306	30	2.2	29	81	10	76	29	28	6	35	1.82
46106250--46106306	30	1.9	30	85	3	80	29	24	7	38	1.82
46107686--46107726	18	2.3	18	80	12	50	24	0	2	73	0.96
46113681--46113732	24	2.2	24	89	0	77	55	9	1	32	1.43
46121140--46121300	80	2.0	80	92	1	270	44	11	10	32	1.75
46121692--46121756	22	3.0	22	78	14	64	40	0	0	60	0.97
46121698--46121746	25	2.0	25	84	4	64	36	0	0	63	0.95
46121818--46121854	19	1.9	19	94	0	65	37	0	0	62	0.96
46121838--46121876	17	2.6	14	84	15	51	38	2	2	56	1.27
46123308--46123377	26	2.6	27	77	20	76	61	0	4	34	1.16
46125424--46125541	43	2.8	43	85	3	159	23	18	27	30	1.98
46127736--46127808	21	3.3	20	80	12	65	52	0	2	45	1.15
46127768--46127834	34	2.0	34	85	5	91	56	1	1	40	1.17
46127909--46127962	24	2.3	24	83	3	74	77	3	5	12	1.07
46130561--46130623	26	2.3	26	76	10	65	50	4	4	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46130614--46130665	20	2.9	17	73	15	50	67	7	0	25	1.17
46135051--46135102	24	2.2	24	82	6	61	50	3	3	42	1.39
46138063--46138161	23	4.3	23	94	0	180	20	21	26	32	1.97
46138291--46138363	38	1.9	37	86	8	103	45	1	21	31	1.61
46140319--46140445	49	2.6	49	85	4	170	26	15	25	31	1.96
46142870--46143055	50	3.8	48	87	3	248	26	22	33	17	1.96
46143526--46143664	45	3.1	44	78	12	140	28	12	20	37	1.90
46144483--46144580	33	2.9	33	84	7	108	36	22	10	30	1.87
46144795--46144991	41	4.8	41	90	5	299	27	22	21	28	1.99
46152160--46152257	33	2.9	33	84	7	108	36	22	10	30	1.87
46152474--46152670	41	4.8	41	91	5	308	27	22	21	28	1.99
46155510--46155545	16	2.2	16	100	0	72	30	0	25	44	1.54
46157064--46157139	23	3.3	23	94	0	134	22	21	25	31	1.98
46157269--46157341	37	1.9	38	86	2	103	46	1	19	32	1.58
46167609--46167646	5	7.6	5	100	0	76	39	0	0	60	0.97
46168672--46168724	26	2.0	26	82	7	63	35	13	26	24	1.92
46169713--46169745	9	3.7	9	91	0	57	33	21	12	33	1.90
46175899--46175923	7	3.6	7	100	0	50	16	40	0	44	1.47
46175938--46175964	13	2.1	13	100	0	54	59	0	0	40	0.98
46181119--46181161	23	1.9	22	85	4	59	55	4	0	39	1.20
46182633--46182721	45	2.0	45	89	6	137	33	12	8	44	1.73
46186424--46186472	15	3.3	15	79	0	53	26	18	0	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46189974--46190004	16	1.9	16	93	0	53	35	3	22	38	1.71
46200140--46200190	25	2.1	25	82	10	61	54	0	3	41	1.19
46217561--46217601	16	2.5	16	96	4	73	48	4	0	46	1.23
46222784--46222808	13	1.9	13	100	0	50	16	0	0	84	0.63
46231983--46232012	14	2.1	15	93	6	53	46	0	0	53	1.00
46232234--46232294	23	2.7	23	80	9	65	45	3	1	49	1.28
46232383--46232408	13	2.0	13	100	0	52	46	0	7	46	1.31
46238530--46238570	21	2.0	21	90	0	64	29	21	29	19	1.98
46257656--46257686	4	7.8	4	100	0	62	51	22	0	25	1.48
46270867--46270913	8	5.6	8	79	16	51	70	0	2	27	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172