genome.fa.s22.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  110  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31707312--31707370	24	2.5	24	94	0	100	42	0	27	30	1.56
31707420--31707477	17	3.2	17	68	13	53	34	3	10	51	1.53
31707411--31707523	37	3.1	37	92	1	183	34	4	12	48	1.61
31707524--31707640	9	12.6	9	89	3	153	22	9	34	34	1.86
31707527--31707577	11	5.0	11	84	15	74	19	7	29	43	1.79
31707703--31707763	28	2.2	28	78	0	68	40	3	14	40	1.62
31710353--31710401	19	2.5	20	81	15	59	20	4	0	75	0.96
31714057--31714083	13	2.1	13	100	0	54	22	22	14	40	1.90
31715086--31715142	28	2.0	28	86	6	80	42	12	10	35	1.77
31715211--31715244	12	2.8	12	95	0	59	29	0	32	38	1.58
31719011--31719386	193	2.0	191	84	5	490	28	9	19	42	1.83
31720382--31720428	16	2.9	17	75	9	53	34	8	6	51	1.58
31721061--31721089	11	2.5	12	88	11	51	58	13	6	20	1.58
31724169--31724223	28	1.9	29	88	3	85	38	21	18	21	1.94
31730833--31730857	12	2.1	12	100	0	50	60	0	8	32	1.26
31730816--31730855	18	2.2	18	86	0	53	57	5	5	32	1.42
31742208--31742249	16	2.7	15	85	10	50	78	4	0	16	0.91
31743413--31743594	90	2.0	90	94	0	319	25	23	12	38	1.89
31745861--31745909	22	2.3	22	79	10	57	40	2	6	51	1.38
31756986--31757347	159	2.3	153	82	4	413	26	24	15	33	1.95
31758279--31758303	12	2.1	12	100	0	50	56	0	0	44	0.99
31759870--31759905	18	1.9	19	88	5	56	38	8	2	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31776227--31776458	116	2.1	113	87	7	330	40	7	14	37	1.75
31779039--31779089	20	2.7	19	76	8	50	25	15	3	54	1.58
31783655--31783679	10	2.5	10	100	0	50	60	0	0	40	0.97
31784830--31784880	20	2.8	17	82	14	57	35	0	1	62	1.06
31785146--31785191	12	3.7	13	78	18	53	50	0	0	50	1.00
31795684--31795798	30	3.8	30	92	0	185	26	48	3	21	1.66
31796387--31796530	25	5.6	25	74	12	87	34	6	2	56	1.41
31796679--31796730	8	6.5	8	82	8	61	32	1	1	63	1.16
31796679--31796731	24	2.2	24	83	10	72	32	3	1	62	1.24
31799809--31799912	51	2.1	51	89	5	158	26	20	24	28	1.99
31800004--31800117	59	1.9	58	96	1	210	31	10	35	22	1.88
31801254--31802177	162	5.9	158	74	16	493	28	16	20	34	1.94
31801412--31801619	72	2.9	72	86	2	249	30	15	20	33	1.94
31801645--31801852	69	2.9	72	82	6	233	30	15	22	31	1.95
31801483--31801777	158	1.9	160	88	5	454	28	15	21	34	1.94
31801625--31801823	69	2.8	70	81	5	229	31	14	21	33	1.93
31801843--31801877	14	2.5	14	95	0	61	17	14	8	60	1.58
31801858--31802019	73	2.2	74	89	2	245	24	17	22	35	1.95
31801697--31802306	162	3.8	160	83	7	690	28	15	20	34	1.94
31802037--31802306	72	3.6	75	82	8	341	33	15	20	31	1.93
31802460--31802601	72	2.0	73	91	1	232	21	15	23	38	1.92
31802612--31802821	73	2.9	72	84	4	251	29	16	22	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31802593--31802792	73	2.8	71	85	2	256	31	14	21	33	1.93
31802812--31802846	14	2.5	14	95	0	61	17	14	8	60	1.58
31802665--31802995	162	2.0	163	86	4	454	27	15	21	35	1.94
31802831--31803030	75	2.7	74	87	3	285	29	15	21	34	1.94
31803742--31803856	30	3.8	30	92	0	194	25	49	3	21	1.65
31803937--31803987	27	2.0	25	92	7	84	13	0	39	47	1.43
31804449--31804505	14	4.1	13	77	18	53	33	3	0	63	1.12
31804519--31804579	24	2.7	22	89	5	86	34	8	4	52	1.53
31804740--31804778	8	4.9	8	84	9	53	30	0	0	69	0.89
31804733--31804778	15	2.9	16	87	9	67	30	2	0	67	1.03
31804744--31804773	7	4.1	7	91	8	51	30	0	0	70	0.88
31804740--31804780	15	2.7	16	88	11	68	31	0	0	68	0.90
31807472--31807550	11	7.0	12	75	16	55	53	1	2	43	1.22
31807473--31807528	21	2.6	22	78	18	64	55	0	1	42	1.10
31807484--31807536	11	4.9	11	82	13	65	54	0	3	41	1.18
31809407--31809477	32	2.2	32	87	0	97	35	9	1	53	1.43
31809411--31809547	31	4.4	31	73	9	109	40	12	2	44	1.57
31820578--31820627	20	2.6	21	84	15	72	48	0	0	52	1.00
31820766--31820800	2	17.5	2	100	0	70	48	0	0	51	1.00
31821520--31821545	7	3.7	7	100	0	52	15	0	0	84	0.62
31822351--31822383	16	2.0	17	88	5	50	63	0	0	36	0.95
31822332--31822466	40	3.3	41	93	5	231	62	0	2	35	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31822368--31822448	11	7.5	11	71	22	57	60	0	2	37	1.10
31822433--31822478	17	2.8	16	80	6	56	60	0	0	39	0.97
31825420--31825454	3	11.7	3	100	0	70	34	0	65	0	0.93
31826087--31826160	27	2.7	27	80	0	85	31	29	16	22	1.96
31829034--31829073	18	2.3	17	91	4	62	65	2	0	32	1.06
31829508--31829594	21	4.0	21	69	14	68	4	34	20	40	1.73
31831558--31831584	13	2.1	13	100	0	54	40	0	14	44	1.46
31831571--31831641	24	3.0	24	91	4	117	32	2	8	56	1.44
31833606--31833658	27	2.0	26	85	3	70	3	18	1	75	1.05
31834350--31834578	104	2.2	104	80	2	271	39	11	21	27	1.88
31850081--31850280	108	1.9	106	88	2	301	34	18	18	28	1.95
31850906--31850939	10	3.0	12	83	16	54	44	0	14	41	1.45
31851043--31851107	3	22.3	3	74	22	59	70	0	4	24	1.06
31851043--31851109	5	12.2	5	85	7	62	71	0	4	23	1.04
31851076--31851109	5	6.8	5	100	0	68	82	0	0	17	0.67
31855296--31855349	13	4.2	13	80	0	72	33	7	25	33	1.84
31860556--31860606	15	3.3	15	84	10	59	86	5	5	1	0.78
31860565--31860618	22	2.5	21	79	8	63	81	5	9	3	0.97
31861487--31862112	79	8.1	75	80	11	588	30	17	19	32	1.95
31861487--31862072	158	3.7	154	85	7	713	30	17	20	31	1.96
31862242--31862303	5	12.0	5	78	10	54	24	1	1	72	1.02
31862252--31862316	32	2.1	30	86	8	87	26	1	3	69	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31862487--31862624	30	4.7	29	71	12	93	26	20	9	43	1.82
31863133--31863194	28	2.3	26	86	10	81	75	0	24	0	0.80
31863136--31863197	13	5.0	13	84	9	76	77	0	22	0	0.77
31863142--31863196	24	2.3	25	84	12	80	78	0	21	0	0.76
31864008--31864195	17	10.3	17	69	20	105	38	11	9	40	1.74
31864036--31864178	18	7.6	19	71	17	111	38	12	9	39	1.76
31864008--31864195	37	5.1	38	83	9	189	38	11	9	40	1.74
31864165--31864222	16	3.5	17	79	9	66	29	6	12	51	1.65
31864146--31864205	17	3.2	18	79	13	59	33	6	10	50	1.62
31870045--31870076	13	2.5	13	94	0	55	62	3	3	31	1.26
31879106--31879134	2	14.5	2	100	0	58	48	0	0	51	1.00
31881413--31881448	17	2.1	17	94	0	63	41	19	13	25	1.88
31882741--31882797	30	1.9	30	88	0	87	50	3	1	43	1.29
31883392--31884137	114	6.6	114	82	1	841	32	17	22	28	1.96
31883436--31884139	228	3.1	228	91	0	1106	32	16	22	28	1.96
31884409--31884498	7	13.0	7	72	11	60	13	0	42	44	1.43
31884458--31884498	20	2.0	21	85	4	57	9	0	46	43	1.36
31886413--31886441	14	2.0	15	93	6	51	6	6	17	68	1.34
31886369--31886447	39	2.0	38	85	9	106	15	11	21	51	1.74
31887679--31887763	25	3.3	24	69	15	71	40	15	3	41	1.64
31887747--31888018	126	2.2	126	91	1	429	41	17	3	36	1.67
31887681--31887988	84	3.7	83	76	10	256	40	17	3	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31887810--31888262	151	3.0	150	87	4	514	41	16	3	37	1.67
31887958--31888043	25	3.5	24	88	6	102	43	15	3	38	1.63
31887983--31888035	16	3.8	16	68	31	57	45	15	3	35	1.64
31888003--31888189	41	4.5	42	78	3	191	40	16	3	40	1.66
31888129--31888214	25	3.5	24	76	6	73	44	13	1	40	1.52
31888129--31888288	50	3.2	50	75	9	146	43	16	3	37	1.64
31888150--31888288	25	5.5	25	76	9	131	43	16	2	37	1.63
31893709--31893758	21	2.4	21	82	0	64	32	16	48	4	1.64
31894078--31894336	42	6.2	42	90	2	362	38	19	19	22	1.94
31894077--31894334	126	2.0	126	90	1	410	38	19	19	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172