genome.fa.s22.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  138  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39679552--39679596	13	3.6	12	90	6	63	84	2	0	13	0.72
39682308--39682346	2	19.5	2	100	0	78	0	51	0	48	1.00
39682401--39682454	2	27.0	2	96	0	99	0	51	0	48	1.00
39688898--39689053	43	3.7	42	76	13	160	29	28	17	23	1.97
39690724--39690861	3	46.3	3	97	1	260	67	0	32	0	0.91
39691631--39691869	124	2.0	121	85	5	324	32	19	17	30	1.95
39691972--39692078	54	2.0	54	98	0	205	32	20	16	29	1.95
39692561--39692598	15	2.4	17	87	12	55	10	55	5	28	1.56
39701704--39701734	14	2.2	14	94	0	53	38	0	12	48	1.42
39704794--39704819	6	4.3	6	100	0	52	15	0	0	84	0.62
39705632--39705671	21	1.9	21	89	0	62	10	2	7	80	1.00
39705631--39705663	13	2.4	14	90	5	50	12	3	9	75	1.14
39705668--39705702	13	2.7	13	91	8	54	28	0	2	68	1.04
39707315--39707376	28	2.1	30	88	5	92	40	3	6	50	1.44
39715181--39715237	6	9.5	6	86	0	69	1	61	0	36	1.07
39717355--39717433	37	2.1	37	88	4	115	26	31	17	24	1.97
39717881--39717938	24	2.5	23	81	16	66	32	5	0	62	1.18
39720442--39720858	184	2.3	176	85	4	532	48	11	13	26	1.76
39723681--39723729	2	24.5	2	91	0	80	4	46	0	48	1.20
39733970--39734028	5	12.2	5	81	18	72	40	0	0	59	0.97
39733970--39734022	13	3.8	13	81	13	70	39	0	0	60	0.97
39733970--39734028	29	2.0	29	90	6	93	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39734037--39734132	40	2.4	41	91	3	167	65	8	26	0	1.20
39734327--39734358	13	2.5	13	94	0	55	31	0	12	56	1.37
39734453--39734694	50	4.7	50	86	4	297	26	24	29	19	1.99
39734453--39734702	100	2.4	103	88	6	364	26	24	29	20	1.99
39736334--39736380	25	1.9	24	91	4	76	38	2	0	59	1.09
39738751--39738798	2	24.5	2	95	4	89	0	47	0	52	1.00
39739174--39739199	3	8.7	3	100	0	52	65	0	34	0	0.93
39746718--39746799	41	2.0	41	100	0	164	48	17	9	24	1.76
39748383--39749104	365	2.0	365	97	0	1354	38	15	13	32	1.87
39755304--39755329	7	3.7	7	100	0	52	46	0	0	53	1.00
39757739--39757987	50	4.8	50	84	4	275	20	29	24	25	1.99
39757738--39757987	100	2.4	104	86	6	348	20	29	24	25	1.99
39758082--39758113	13	2.5	13	94	0	55	56	12	0	31	1.37
39759672--39760173	227	2.2	230	82	3	629	36	18	9	34	1.84
39764860--39765488	325	1.9	327	85	2	870	33	19	11	34	1.88
39765715--39765744	14	2.1	14	100	0	60	60	20	0	20	1.37
39767988--39768040	26	2.1	24	83	13	63	33	20	28	16	1.95
39770571--39770607	14	2.6	15	83	8	51	62	0	5	32	1.18
39774317--39774504	92	2.0	92	92	2	315	46	14	12	26	1.81
39777726--39777798	37	2.0	36	81	10	85	60	1	4	34	1.24
39782461--39782527	9	7.4	9	85	6	91	25	7	22	44	1.78
39782461--39782527	27	2.5	27	95	0	116	25	7	22	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39784443--39784531	42	2.1	42	97	0	169	34	11	22	31	1.89
39794070--39794112	9	4.8	9	77	11	52	46	2	0	51	1.13
39799826--39799865	13	3.1	13	81	0	53	37	25	7	30	1.83
39806443--39806508	30	2.1	34	86	11	95	40	0	7	51	1.30
39815108--39815149	18	2.4	18	80	15	52	54	2	7	35	1.41
39817420--39817448	5	5.8	5	100	0	58	82	0	0	17	0.66
39821938--39822045	37	2.8	37	80	6	117	33	25	15	25	1.95
39821918--39822060	37	3.6	41	75	11	111	34	24	17	23	1.96
39822859--39822897	11	3.6	11	80	19	55	0	28	0	71	0.86
39822858--39822891	17	1.9	18	94	5	61	0	26	0	73	0.83
39837736--39837776	20	2.0	20	90	0	64	51	2	0	46	1.14
39840473--39840508	16	2.2	16	95	0	63	41	13	19	25	1.88
39849501--39849576	30	2.5	30	79	16	84	43	9	2	44	1.50
39850494--39850546	20	2.6	20	76	8	54	64	7	0	28	1.21
39854110--39854148	2	19.5	2	100	0	78	51	0	0	48	1.00
39854220--39854271	23	2.3	23	96	0	95	46	17	7	28	1.75
39854291--39854348	29	2.0	30	89	3	91	56	5	10	27	1.54
39854294--39854349	15	3.9	14	79	6	58	60	5	8	25	1.47
39854930--39854972	18	2.4	18	84	7	52	44	41	2	11	1.53
39855067--39855097	9	3.4	9	90	0	53	25	9	22	41	1.84
39855523--39855556	18	1.9	18	88	5	52	14	11	2	70	1.27
39860125--39860158	18	1.9	18	94	5	61	11	11	5	70	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39866640--39866692	21	2.5	20	85	8	70	56	5	3	33	1.41
39869319--39869354	16	2.2	16	100	0	72	25	0	36	38	1.56
39869477--39869793	157	2.0	157	94	1	555	43	3	5	47	1.41
39869727--39869768	15	2.7	16	82	14	52	52	2	0	45	1.13
39869736--39869777	15	2.9	15	82	10	52	52	0	0	47	1.00
39869762--39869947	61	3.1	61	68	14	197	48	6	2	42	1.43
39869730--39870020	118	2.4	121	92	4	484	50	4	3	41	1.39
39869730--39869899	61	2.9	57	67	14	139	51	4	2	41	1.36
39872433--39872461	6	4.8	6	100	0	58	31	0	68	0	0.89
39873428--39873479	16	3.2	16	100	0	104	25	0	36	38	1.56
39873715--39873749	18	2.0	17	88	5	52	54	0	0	45	0.99
39873835--39873869	18	2.0	17	88	5	52	54	0	0	45	0.99
39873698--39874080	120	3.2	120	97	0	730	48	5	2	43	1.38
39873955--39873989	18	2.0	18	88	5	54	54	2	0	42	1.15
39877143--39877198	21	2.6	21	91	2	85	41	25	12	21	1.88
39878289--39878404	15	7.5	15	66	24	62	62	12	17	7	1.53
39878269--39878404	33	4.3	33	80	12	185	60	13	18	8	1.57
39878335--39878389	18	3.2	18	71	23	64	60	14	16	9	1.59
39884342--39884374	16	2.1	16	88	5	50	9	30	12	48	1.71
39885772--39885848	34	2.3	34	88	6	113	25	20	12	40	1.89
39890935--39890967	16	2.0	17	88	5	50	12	18	12	57	1.64
39908469--39908523	2	27.5	2	100	0	110	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39910393--39910430	11	3.3	12	85	10	53	60	0	2	36	1.11
39912883--39912920	14	2.8	14	84	4	51	47	0	0	52	1.00
39912875--39912923	13	3.7	13	75	5	53	48	2	0	48	1.12
39915653--39916036	128	3.0	128	89	1	594	38	18	14	28	1.90
39918157--39918519	181	2.0	181	99	0	717	33	18	20	27	1.96
39926784--39926824	6	6.8	6	100	0	82	0	14	0	85	0.60
39937180--39937229	3	16.7	3	100	0	100	34	0	0	66	0.92
39939280--39939426	73	2.0	73	100	0	294	25	13	19	41	1.88
39946657--39946689	12	2.8	12	90	0	57	15	39	3	42	1.62
39950811--39950901	40	2.3	40	84	0	119	25	24	8	41	1.83
39952278--39952302	8	3.1	8	100	0	50	48	24	0	28	1.52
39953875--39954047	75	2.3	75	82	2	222	28	21	24	25	1.99
39962561--39962590	12	2.5	12	88	0	51	6	40	10	43	1.64
39963843--39963887	24	1.9	24	86	13	67	55	0	2	42	1.12
39974195--39974222	13	2.2	13	100	0	56	0	14	21	64	1.29
39975981--39976008	13	2.2	13	100	0	56	42	0	7	50	1.30
39979099--39979306	91	2.3	91	87	2	283	46	4	3	46	1.39
39979446--39979497	15	3.6	15	80	12	56	44	0	1	53	1.11
39979322--39979618	120	2.5	120	93	2	499	42	2	5	49	1.38
39979575--39979616	15	2.7	16	82	14	52	45	0	2	52	1.13
39979566--39979607	15	2.9	15	82	10	52	47	0	0	52	1.00
39979830--39979873	16	2.8	16	96	0	79	27	34	0	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39979828--39979889	32	1.9	32	87	6	90	29	32	0	38	1.57
39979832--39979899	16	4.2	16	88	0	73	32	32	0	35	1.58
39989096--39989131	17	2.1	17	100	0	72	11	33	16	38	1.84
39991059--39991142	33	2.6	32	86	3	123	14	39	27	19	1.90
39994581--39994616	16	2.2	16	100	0	72	25	0	36	38	1.56
39994835--39994876	15	2.7	16	82	14	52	52	2	0	45	1.13
39994844--39994885	15	2.9	15	82	10	52	52	0	0	47	1.00
39995643--39995672	13	2.3	13	100	0	60	60	13	6	20	1.55
39998374--39998427	24	2.2	25	80	9	67	38	5	0	55	1.23
40003579--40003639	13	4.7	13	77	0	59	27	6	26	39	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172