genome.fa.s22.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  140  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40237284--40237342	15	3.7	15	81	18	75	16	0	1	81	0.78
40242239--40242272	17	2.1	17	89	10	54	55	0	0	44	0.99
40242575--40242603	3	9.7	3	100	0	58	68	0	31	0	0.89
40243577--40243601	6	4.2	6	100	0	50	32	0	32	36	1.58
40250109--40250140	16	2.0	16	100	0	64	62	6	12	18	1.50
40256034--40256117	21	4.0	21	75	14	77	47	0	3	48	1.19
40256034--40256107	10	7.2	10	67	11	51	47	0	1	51	1.09
40259257--40259281	13	1.9	13	100	0	50	40	48	0	12	1.40
40259262--40259378	39	3.0	39	96	1	209	50	28	2	18	1.60
40259514--40259576	17	3.5	17	69	12	54	34	3	12	49	1.57
40259511--40259585	37	2.0	37	94	0	132	36	4	14	45	1.64
40259584--40259614	9	3.4	9	95	0	53	25	9	22	41	1.84
40260611--40260638	14	2.0	14	100	0	56	21	57	7	14	1.61
40260788--40260879	44	2.2	41	86	7	123	13	17	18	51	1.77
40261587--40261636	19	2.4	21	83	12	68	36	0	4	60	1.16
40263955--40264000	23	2.0	23	87	4	67	34	0	2	63	1.07
40266476--40266602	63	2.0	63	100	0	254	26	7	22	43	1.80
40267686--40267720	15	2.2	16	90	5	54	68	0	5	25	1.11
40284214--40284291	39	2.0	39	80	11	90	42	3	6	47	1.47
40289511--40289592	31	2.7	31	81	5	80	48	9	9	31	1.69
40292602--40292644	14	2.8	16	82	13	63	37	0	0	62	0.95
40292602--40292671	23	3.1	23	74	10	63	38	1	2	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40292600--40292652	16	3.4	16	79	10	56	41	0	1	56	1.10
40292614--40292638	7	3.6	7	100	0	50	40	0	0	60	0.97
40295677--40295735	16	3.4	16	78	17	73	38	20	8	32	1.83
40295689--40295753	20	3.5	20	78	18	86	40	16	9	33	1.81
40295675--40295753	36	2.2	35	95	4	149	39	17	8	34	1.81
40295885--40295972	25	3.6	25	70	1	70	31	21	20	26	1.98
40297983--40298032	20	2.6	19	78	6	55	60	10	0	30	1.30
40297988--40298046	19	3.1	19	82	2	64	54	10	0	35	1.34
40302990--40303030	19	2.0	20	86	9	57	36	0	0	63	0.95
40303543--40303572	15	1.9	16	93	6	53	46	0	0	53	1.00
40304190--40304253	26	2.4	27	77	10	71	32	1	1	64	1.13
40317312--40317361	26	1.9	26	95	0	91	32	20	18	30	1.96
40329159--40329183	4	6.2	4	100	0	50	76	0	0	24	0.80
40347901--40347960	30	2.0	31	83	9	79	20	38	0	41	1.52
40358348--40358391	23	1.9	23	85	0	61	40	2	2	54	1.25
40358646--40358695	18	2.7	19	80	20	61	40	0	0	60	0.97
40358618--40358697	28	2.9	28	83	12	94	40	0	0	60	0.97
40362534--40362567	7	4.9	7	96	0	59	41	0	55	2	1.15
40364987--40365012	12	2.2	12	100	0	52	76	7	0	15	0.99
40369808--40369843	18	2.1	17	89	5	54	63	2	8	25	1.36
40370279--40370315	19	1.9	19	89	10	58	81	0	18	0	0.70
40372759--40372788	6	5.0	6	100	0	60	33	0	50	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40373538--40373574	18	2.1	18	94	0	65	62	2	0	35	1.10
40373538--40373603	9	6.9	9	73	21	55	63	1	1	33	1.13
40378121--40378145	3	8.3	3	100	0	50	64	0	36	0	0.94
40379204--40379254	23	2.3	22	83	10	59	29	7	1	60	1.36
40379307--40379331	6	4.2	6	100	0	50	16	0	0	84	0.63
40379603--40379633	16	1.9	16	93	0	53	74	3	0	22	0.96
40392794--40392826	13	2.5	13	100	0	66	36	6	0	57	1.23
40394218--40394245	3	9.3	3	100	0	56	0	32	0	67	0.91
40397543--40397604	31	2.0	31	87	0	88	51	6	14	27	1.66
40398121--40398517	109	3.7	109	91	1	645	34	19	14	30	1.92
40400012--40400060	26	1.9	25	83	4	62	34	12	10	42	1.76
40401318--40401356	15	2.5	16	87	4	53	38	5	10	46	1.60
40401459--40401525	22	3.1	21	75	12	55	50	4	8	35	1.54
40403873--40403937	30	2.2	30	94	0	112	20	4	16	58	1.56
40406509--40406703	98	2.0	98	94	0	345	36	26	10	27	1.88
40407209--40407423	106	2.0	106	100	0	430	51	5	8	34	1.56
40408276--40408407	19	6.8	19	90	3	210	36	15	9	38	1.80
40408269--40408406	59	2.4	59	90	4	212	36	14	9	39	1.79
40417381--40417413	8	4.2	8	84	7	50	75	0	0	24	0.80
40417379--40417415	15	2.6	14	91	8	65	67	0	0	32	0.91
40425723--40425766	22	2.0	21	86	4	61	61	6	2	29	1.34
40431806--40431842	12	3.0	13	84	11	51	29	40	18	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40433673--40433706	17	2.0	17	88	0	50	38	0	2	58	1.13
40434272--40434328	29	2.0	29	82	6	71	31	0	3	64	1.10
40438377--40438482	15	7.1	15	70	11	83	27	20	6	45	1.76
40438377--40438486	30	3.7	30	95	0	175	26	20	6	46	1.75
40443071--40443180	30	3.7	30	90	4	170	25	20	6	47	1.74
40443093--40443176	15	5.6	15	69	10	73	27	19	7	46	1.75
40447118--40447159	12	3.1	13	80	19	50	52	2	9	35	1.47
40447568--40447630	19	3.2	19	71	13	56	66	4	3	25	1.26
40447564--40447641	30	2.7	28	78	7	77	61	5	3	29	1.35
40481891--40482083	51	3.8	49	80	4	208	25	18	26	29	1.98
40481893--40482083	101	1.9	100	89	3	267	26	18	26	28	1.98
40484495--40484529	17	2.1	17	88	0	52	45	20	5	28	1.73
40487663--40487738	21	3.7	20	84	6	91	17	23	15	43	1.87
40487972--40487998	8	3.4	8	100	0	54	37	0	14	48	1.45
40490263--40490308	22	2.1	22	92	8	76	69	8	0	21	1.15
40490263--40490317	22	2.5	21	82	5	65	67	10	0	21	1.21
40497885--40497931	18	2.6	18	79	0	58	38	17	10	34	1.84
40510017--40510049	17	1.9	17	88	11	50	24	3	0	72	0.98
40511838--40511880	9	4.7	9	94	2	59	46	4	0	48	1.22
40511840--40511890	18	2.8	18	79	8	50	49	5	1	43	1.38
40516639--40517278	23	24.4	23	75	17	362	43	22	1	32	1.61
40516622--40517903	29	46.8	28	78	13	983	41	24	1	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40516628--40517843	167	7.4	163	80	11	1017	42	24	1	32	1.63
40516793--40517888	144	7.9	144	76	12	843	41	24	1	32	1.65
40517644--40517814	23	6.4	23	71	22	90	42	25	1	29	1.65
40521168--40521547	125	3.1	125	94	1	649	32	22	15	29	1.94
40526789--40526832	21	2.0	22	83	12	56	65	4	13	15	1.41
40528673--40528818	37	4.0	37	90	1	224	25	22	15	36	1.93
40528782--40529095	46	6.2	53	83	11	369	28	22	13	35	1.92
40528793--40529088	149	2.0	151	93	1	515	28	21	14	35	1.93
40529020--40529054	15	2.3	15	90	0	52	25	25	5	42	1.77
40528974--40529096	53	2.3	53	90	2	185	30	21	12	35	1.90
40531446--40531622	86	2.1	86	93	0	300	44	14	15	25	1.84
40532354--40532408	24	2.3	23	79	11	58	40	1	1	56	1.21
40532410--40532470	21	2.9	22	80	9	65	40	0	4	54	1.22
40535624--40535654	14	2.2	14	100	0	62	35	25	12	25	1.92
40542882--40542928	24	1.9	25	82	4	60	72	6	0	21	1.07
40558896--40558949	26	2.1	26	100	0	108	27	25	3	42	1.72
40563361--40563406	3	15.3	3	100	0	92	32	0	0	67	0.91
40568561--40568666	25	4.3	25	71	5	81	35	20	23	19	1.96
40568528--40568656	50	2.5	53	78	12	137	34	21	20	23	1.97
40568680--40568730	25	2.0	25	81	7	59	37	13	19	29	1.90
40572888--40572933	24	1.9	25	86	8	69	65	0	0	34	0.93
40579009--40579048	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40578997--40579062	35	1.9	34	84	6	89	46	10	7	34	1.67
40579743--40579786	20	2.2	20	83	4	52	40	4	0	54	1.21
40582000--40582031	16	2.0	16	93	0	55	75	0	3	21	0.95
40584123--40584175	19	2.6	21	77	14	58	45	7	15	32	1.74
40592858--40593061	103	2.0	102	84	4	272	44	3	1	50	1.29
40593354--40593514	72	2.2	73	82	3	202	45	7	10	36	1.67
40593707--40593788	17	4.6	17	71	14	58	56	0	3	40	1.17
40593716--40593790	38	2.1	36	85	9	100	60	0	4	36	1.16
40593725--40593781	19	3.0	20	74	7	64	56	0	5	38	1.22
40593766--40593797	13	2.5	13	94	0	55	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172