genome.fa.s22.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  64  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17781331--17781555	80	2.8	80	82	7	262	26	28	21	24	1.99
17788310--17788449	40	3.5	40	82	1	154	24	29	14	32	1.94
17788310--17788467	80	2.0	80	81	2	183	24	28	14	32	1.94
17792662--17792694	13	2.8	12	90	9	50	36	9	12	42	1.74
17793902--17794233	50	6.6	50	81	5	364	29	15	25	28	1.96
17793902--17794233	101	3.3	100	87	5	413	29	15	25	28	1.96
17793946--17794224	151	1.8	152	86	2	409	29	15	25	29	1.96
17800668--17800710	19	2.2	19	88	12	61	81	2	2	13	0.89
17800668--17800709	6	6.7	6	82	17	50	80	2	2	14	0.90
17802278--17802373	28	3.1	31	76	22	94	28	25	22	23	2.00
17802299--17802370	28	2.5	28	88	6	110	29	23	22	25	1.99
17802477--17802545	25	2.7	26	78	10	72	37	17	26	18	1.93
17802725--17803002	27	10.3	27	80	5	276	16	21	20	41	1.90
17802794--17803002	81	2.6	82	92	0	339	15	20	22	41	1.90
17807226--17807250	9	2.8	9	100	0	50	32	12	20	36	1.89
17809354--17809410	28	2.0	28	86	0	78	42	7	12	38	1.70
17815649--17815692	22	2.0	21	83	12	54	40	0	0	59	0.98
17820853--17820928	26	3.0	26	77	9	75	39	23	21	15	1.92
17821106--17821307	27	7.5	27	81	2	244	16	18	18	46	1.85
17830189--17830383	61	3.2	61	82	0	246	27	25	15	31	1.96
17830213--17830384	32	5.6	32	68	13	99	27	25	15	31	1.95
17834409--17834447	20	2.0	20	89	0	60	23	20	12	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17834391--17834460	20	3.5	20	80	0	59	25	24	11	38	1.89
17847851--17847940	41	2.2	40	82	5	101	31	15	31	22	1.95
17849696--17849836	40	3.5	40	88	0	210	25	19	22	32	1.97
17851189--17851325	41	3.4	41	86	4	188	38	17	27	16	1.91
17852211--17852251	20	2.0	20	100	0	82	24	19	9	46	1.80
17854354--17854524	91	1.9	90	85	4	236	41	15	11	30	1.83
17854612--17854653	14	3.0	14	86	6	50	35	0	0	64	0.94
17862458--17862490	15	2.3	15	89	5	50	69	3	0	27	1.03
17863307--17863349	16	2.5	17	85	14	54	67	0	4	27	1.10
17863299--17863349	16	2.9	17	80	16	52	64	0	7	27	1.21
17864136--17864168	14	2.4	14	85	14	50	24	3	0	72	0.98
17866329--17866368	16	2.4	16	88	12	55	37	0	0	62	0.95
17866345--17866426	36	2.1	41	85	12	113	32	1	0	65	1.00
17866394--17866447	27	2.0	27	81	0	63	29	1	7	61	1.34
17867250--17867477	42	5.3	43	86	6	284	32	20	22	25	1.98
17867250--17867521	85	3.2	85	82	4	289	31	20	21	26	1.98
17867358--17867538	42	4.3	43	82	3	134	32	21	19	26	1.97
17867970--17868034	21	3.1	21	86	0	85	4	44	18	32	1.70
17869573--17869801	18	12.7	18	83	5	257	32	1	16	49	1.56
17869573--17869794	27	8.2	27	85	6	272	32	1	16	48	1.57
17869573--17869801	36	6.4	36	87	7	304	32	1	16	49	1.56
17873401--17873750	113	3.1	112	81	5	409	27	22	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17873531--17873917	188	2.1	188	90	1	607	26	22	18	31	1.97
17873925--17874192	114	2.3	114	84	5	344	24	22	19	34	1.96
17874855--17874916	24	2.6	24	89	0	88	32	27	4	35	1.78
17876546--17876793	43	5.8	43	88	5	326	31	26	19	23	1.98
17876900--17876924	6	4.2	6	100	0	50	36	32	0	32	1.58
17878692--17878717	11	2.4	11	100	0	52	69	0	15	15	1.20
17879656--17879686	9	3.4	9	90	0	53	25	12	22	38	1.90
17879741--17879768	9	3.1	9	100	0	56	46	10	10	32	1.73
17883640--17883760	59	2.1	60	84	4	158	45	27	2	24	1.66
17883754--17883809	14	4.0	13	77	13	58	35	41	0	23	1.55
17883754--17883810	21	2.7	20	78	10	69	36	40	0	22	1.55
17883751--17883851	34	2.9	34	89	5	141	36	42	0	20	1.53
17883828--17883868	21	2.0	20	85	4	55	39	41	0	19	1.52
17883855--17883889	15	2.4	14	86	9	52	40	37	0	22	1.55
17884272--17884548	41	6.8	41	86	1	367	32	31	17	18	1.95
17887041--17887086	21	2.2	21	85	11	60	23	10	8	56	1.61
17892213--17892261	25	2.0	25	87	0	71	34	14	18	32	1.91
17901944--17902066	25	4.9	25	80	11	119	21	21	25	31	1.98
17901969--17902081	50	2.3	51	81	6	124	23	20	25	30	1.98
17905906--17906083	27	6.6	27	83	3	205	26	15	28	29	1.96
17905907--17906062	82	1.9	81	88	3	233	26	15	28	29	1.96
17905903--17906083	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17913929--17914105	27	6.6	27	83	5	205	27	14	28	29	1.95
17913930--17914084	81	1.9	81	89	5	242	27	14	28	29	1.95
17913926--17914105	81	2.2	81	84	3	238	27	15	27	30	1.96
17916058--17916296	115	2.1	110	87	6	338	28	19	20	30	1.97
17916648--17916699	7	7.6	7	77	10	54	17	0	42	40	1.49
17916650--17916690	21	1.9	22	90	5	66	19	0	41	39	1.52
17916628--17916700	28	2.5	30	86	6	96	17	0	41	41	1.50
17917866--17917956	45	2.0	45	89	0	137	24	31	7	36	1.84
17918442--17918512	35	2.0	35	97	0	133	12	19	16	50	1.77
17919584--17919677	29	3.3	29	68	13	86	36	4	3	56	1.35
17919591--17919679	28	3.2	28	67	17	85	39	4	3	52	1.38
17919661--17919695	15	2.3	15	100	0	70	48	0	5	45	1.26
17919685--17919722	18	2.1	19	85	9	53	26	0	7	65	1.19
17919769--17919818	18	2.9	17	85	8	66	38	18	2	42	1.61
17919916--17920116	22	9.3	22	66	22	65	47	19	1	30	1.61
17919933--17920042	31	3.4	32	79	10	109	45	20	2	31	1.65
17920033--17920109	24	3.6	21	73	14	68	51	19	1	27	1.54
17920047--17920101	12	4.8	12	88	4	78	52	16	1	29	1.54
17920040--17920108	24	3.0	24	87	8	92	53	17	1	27	1.52
17920047--17920108	12	5.5	11	87	11	74	53	16	1	29	1.52
17920184--17920208	12	2.1	12	100	0	50	52	16	0	32	1.44
17920193--17920243	19	2.7	19	88	11	86	50	17	0	31	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17920193--17920331	9	15.9	9	74	16	98	47	20	2	30	1.62
17920224--17920331	16	6.9	16	72	17	68	47	20	2	29	1.64
17920228--17920331	25	4.1	25	79	4	118	46	21	2	29	1.66
17925782--17925821	21	1.9	21	100	0	80	35	20	45	0	1.51
17926239--17926342	42	2.4	43	82	7	124	30	25	19	25	1.98
17926239--17926521	85	3.3	85	85	6	292	26	21	20	31	1.98
17926238--17926550	43	7.4	41	86	7	337	25	21	21	30	1.98
17926282--17926550	85	3.2	85	87	4	357	24	21	22	31	1.98
17926815--17927074	141	1.9	140	84	3	353	33	6	21	38	1.80
17929835--17929862	3	9.3	3	100	0	56	67	0	0	32	0.91
17936295--17936377	23	3.7	23	77	7	82	39	21	6	32	1.78
17936308--17936505	46	4.3	47	72	7	174	40	23	4	32	1.73
17936310--17936390	23	3.5	23	75	9	76	39	20	4	34	1.75
17936445--17936509	23	2.8	23	85	0	76	38	21	4	35	1.74
17937416--17937596	7	25.4	7	72	13	93	46	30	1	22	1.59
17937427--17937529	36	2.8	38	74	8	108	44	34	0	20	1.52
17937969--17938093	40	3.1	40	82	0	151	29	21	16	32	1.96
17943115--17943337	111	2.0	111	100	0	446	34	23	10	30	1.89
17946219--17946304	44	2.0	44	88	0	127	48	3	9	38	1.52
17946294--17946331	6	6.2	6	85	14	51	50	2	0	47	1.15
17946934--17947022	44	2.0	44	91	0	142	47	3	8	40	1.52
17947930--17948039	55	2.0	55	96	0	202	39	10	12	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17952462--17952566	54	1.9	55	90	1	167	39	6	12	41	1.69
17959372--17959472	29	3.5	28	74	14	98	28	10	26	33	1.90
17959393--17959482	28	3.2	27	77	14	101	30	8	27	33	1.87
17959373--17959525	57	2.7	57	87	0	216	28	10	27	33	1.90
17959404--17959495	28	3.2	28	76	14	98	25	10	28	35	1.89
17959374--17959552	57	3.1	57	83	4	209	28	10	28	32	1.89
17963982--17964059	42	1.9	41	89	5	122	38	19	12	29	1.89
17965669--17965700	3	10.7	3	100	0	64	68	31	0	0	0.90
17965710--17965749	8	4.7	9	82	17	50	2	17	0	80	0.83
17965710--17965749	18	2.4	16	87	8	53	2	17	0	80	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172