genome.fa.s22.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  40  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10296238--10296275	19	2.1	19	85	5	51	50	5	13	31	1.63
10296671--10296729	6	9.8	6	94	0	100	54	0	28	16	1.43
10315831--10315876	14	3.3	15	76	11	53	17	0	10	71	1.13
10316372--10316427	16	3.6	16	85	4	78	58	0	0	41	0.98
10316384--10316429	15	2.9	15	87	9	56	63	0	0	36	0.95
10319102--10319570	163	2.9	162	84	3	622	40	24	9	25	1.85
10330315--10330497	101	1.8	102	84	3	253	25	18	25	30	1.98
10330307--10330506	51	3.9	51	77	5	226	25	18	26	29	1.98
10330506--10330577	36	2.1	36	84	5	94	25	8	26	40	1.83
10330715--10330746	16	2.0	16	93	0	55	59	0	15	25	1.36
10333089--10333139	26	1.9	27	84	11	70	29	5	15	49	1.68
10342842--10342909	33	2.1	33	97	0	127	36	11	25	26	1.90
10344156--10344181	13	2.0	13	100	0	52	69	0	0	30	0.89
10346796--10346893	34	2.9	33	89	6	142	41	0	15	42	1.46
10346795--10346904	34	3.2	33	84	6	139	40	0	13	45	1.50
10346967--10347359	125	3.1	124	84	2	484	37	16	16	29	1.91
10352008--10352115	45	2.4	45	80	9	130	27	22	23	26	1.99
10352214--10352659	45	10.0	45	78	4	420	29	23	17	29	1.97
10352210--10352667	90	5.1	90	83	2	467	29	24	16	29	1.96
10352432--10352703	87	3.1	88	83	2	278	27	23	19	29	1.98
10366421--10366459	17	2.3	17	81	0	51	43	2	0	53	1.14
10367059--10367124	22	2.9	23	77	8	64	12	4	28	54	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10367122--10367220	34	2.9	33	88	5	135	42	0	17	40	1.49
10367292--10367684	125	3.1	125	84	4	508	38	17	15	28	1.91
10370678--10370726	25	1.9	25	84	12	64	59	4	0	36	1.17
10370674--10370730	24	2.3	23	78	18	62	54	3	0	42	1.17
10380270--10380321	6	8.5	6	84	16	63	15	5	0	78	0.92
10384412--10384463	23	2.3	22	83	9	61	30	1	7	59	1.36
10387117--10387175	17	3.4	17	76	17	66	32	0	6	61	1.22
10387608--10387858	42	5.9	43	78	6	244	27	29	17	25	1.98
10387841--10387930	43	2.1	43	82	0	108	25	21	18	34	1.96
10392279--10392368	41	2.2	40	90	2	135	23	25	21	30	1.99
10397537--10397577	16	2.6	16	96	0	73	34	14	14	36	1.87
10410180--10410211	14	2.1	16	88	11	50	46	9	12	31	1.73
10416232--10416324	48	1.9	48	97	0	177	22	16	12	48	1.80
10421031--10421055	9	2.8	9	100	0	50	20	24	20	36	1.95
10423192--10423299	20	5.8	18	71	15	60	51	3	1	42	1.30
10423156--10423300	68	2.1	71	80	7	163	52	4	2	40	1.37
10426599--10426652	28	2.0	27	85	7	74	48	3	0	48	1.19
10427229--10427272	22	2.0	21	83	12	54	4	38	0	56	1.20
10429952--10429979	2	14.0	2	100	0	56	50	0	0	50	1.00
10430822--10430869	13	3.6	12	77	22	51	35	0	2	62	1.07
10433353--10433377	12	2.1	12	100	0	50	40	0	24	36	1.55
10458886--10458943	16	3.8	16	72	19	61	63	0	5	31	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10460267--10460299	12	2.8	12	95	0	57	36	9	0	54	1.32
10461306--10461746	216	2.0	220	88	3	658	27	23	14	34	1.94
10462027--10462068	22	1.9	22	95	0	75	21	21	4	52	1.65
10466890--10466914	12	2.1	12	100	0	50	40	0	8	52	1.31
10467327--10467385	20	3.0	20	76	0	55	30	23	13	32	1.93
10468840--10468903	5	13.0	5	81	15	80	39	0	1	59	1.07
10469060--10469095	19	1.9	19	94	5	65	72	0	13	13	1.13
10469121--10469152	17	2.0	17	88	11	50	62	15	21	0	1.32
10478804--10479117	25	12.6	25	71	14	186	27	13	22	36	1.91
10478811--10479132	50	6.5	50	82	2	351	27	12	23	37	1.90
10478823--10479132	100	3.1	99	83	3	390	27	12	23	37	1.90
10481390--10481420	15	2.1	15	100	0	62	12	12	25	48	1.77
10488300--10488384	31	2.8	31	83	1	118	42	9	16	31	1.80
10488294--10488422	60	2.1	62	80	10	144	42	7	17	31	1.78
10489693--10489764	23	3.2	23	84	2	101	31	22	22	23	1.98
10494011--10494052	12	3.3	12	90	6	57	0	21	0	78	0.75
10498282--10498311	14	2.1	14	100	0	60	20	13	16	50	1.78
10505608--10505690	17	4.8	16	71	17	60	74	6	7	12	1.20
10505730--10505780	26	2.0	26	84	7	68	70	1	5	21	1.18
10505835--10505878	23	2.0	22	90	4	70	75	2	0	22	0.92
10505804--10505870	16	4.4	15	72	20	59	73	1	4	20	1.09
10506283--10506363	30	2.6	30	86	5	108	18	28	33	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10509276--10509306	14	2.2	14	94	0	53	48	12	0	38	1.42
10510741--10510783	18	2.3	19	80	15	54	16	16	2	65	1.38
10518317--10518346	11	2.7	11	94	0	51	40	23	6	30	1.80
10533289--10533338	26	1.9	26	91	0	82	18	24	34	24	1.96
10533353--10533634	43	6.6	43	78	9	290	24	14	25	35	1.93
10533315--10533506	85	2.3	84	88	1	285	25	14	24	35	1.93
10533482--10533667	85	2.2	84	92	3	304	23	14	26	35	1.93
10533318--10533634	128	2.5	126	89	5	462	23	14	24	36	1.93
10542235--10542283	3	16.3	3	95	0	89	65	0	2	32	1.04
10550970--10551012	20	2.1	21	86	4	61	20	0	16	62	1.32
10559789--10559858	25	2.8	25	82	4	88	21	22	27	28	1.99
10561153--10561211	29	2.0	29	90	0	91	25	38	18	16	1.92
10561797--10561826	12	2.4	12	94	5	51	60	0	0	40	0.97
10561867--10562095	107	2.1	105	95	0	278	44	14	9	30	1.77
10578806--10579634	44	19.5	44	70	11	338	27	20	19	32	1.97
10578808--10579080	126	2.2	121	85	7	345	26	21	19	32	1.97
10578856--10579044	82	2.3	82	95	1	335	26	20	19	32	1.97
10578856--10579080	39	5.6	39	79	12	224	27	20	19	32	1.97
10578934--10579634	219	3.3	214	85	5	908	28	20	18	32	1.96
10590152--10590199	24	2.0	24	84	8	62	47	0	2	50	1.12
10591555--10591606	18	2.7	19	75	16	54	7	17	1	73	1.16
10591555--10591612	21	2.9	20	74	20	59	8	17	1	72	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10594920--10594950	15	2.1	15	100	0	62	38	25	12	22	1.90
10594959--10595000	20	2.1	20	90	0	66	30	16	11	40	1.85
10598365--10598399	18	1.9	18	88	0	52	20	20	28	31	1.97
10599635--10599665	15	2.1	15	100	0	62	38	25	12	22	1.90
10599674--10599715	20	2.1	20	90	0	66	30	16	11	40	1.85
10603149--10603186	7	5.6	7	96	3	69	15	10	0	73	1.09
10612530--10612569	21	1.9	21	85	10	55	30	2	47	20	1.63
10623157--10623213	29	2.0	29	92	0	96	36	24	12	26	1.91
10624232--10624280	23	2.1	23	85	7	64	73	0	22	4	1.00
10624239--10624287	16	3.2	16	80	13	59	77	2	16	4	1.01
10624238--10624288	23	2.2	23	82	6	59	78	1	15	3	0.99
10626057--10626133	38	2.0	38	94	0	136	42	7	10	38	1.68
10626510--10626569	29	2.0	31	87	9	88	41	16	15	26	1.88
10626965--10627274	27	11.5	27	85	4	353	19	18	20	41	1.91
10626965--10627277	81	3.9	81	84	3	425	19	18	20	41	1.90
10630568--10630631	23	2.9	23	77	11	80	18	20	21	39	1.93
10631813--10631972	85	1.9	85	90	0	257	35	21	16	27	1.94
10632782--10632809	13	2.2	13	100	0	56	50	28	7	14	1.69
10632832--10632915	41	2.1	39	95	4	150	36	7	19	36	1.79
10633276--10633306	9	3.4	9	90	0	53	25	12	22	38	1.90
10633423--10633465	21	2.0	21	82	8	52	20	37	0	41	1.53
10640421--10640451	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10640568--10640610	21	2.0	21	82	8	52	20	37	0	41	1.53
10647564--10647594	9	3.4	9	90	0	53	25	12	22	38	1.90
10647711--10647753	21	2.0	21	82	8	52	20	37	0	41	1.53
10647887--10647943	30	1.9	30	85	0	78	19	36	0	43	1.51
10651792--10651829	14	2.4	17	87	12	55	47	0	0	52	1.00
10651766--10651830	28	2.3	28	80	19	82	49	0	1	49	1.10
10652028--10652075	19	2.5	20	86	6	64	50	4	8	37	1.52
10652575--10652611	18	2.1	18	90	5	58	48	0	18	32	1.49
10653067--10653131	23	3.0	23	80	11	82	18	18	23	40	1.92
10654351--10654522	85	2.0	85	86	2	238	32	18	16	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172