genome.fa.s22.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  131  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37667863--37667942	37	2.3	35	79	12	92	33	28	11	26	1.91
37668173--37668335	41	4.0	41	92	0	272	23	28	19	28	1.98
37668173--37668335	82	2.0	82	97	0	308	23	28	19	28	1.98
37668556--37668599	17	2.7	17	89	6	65	43	18	2	36	1.63
37672332--37672377	23	2.0	23	100	0	92	13	34	17	34	1.88
37676241--37676326	44	2.0	43	86	9	120	55	0	1	43	1.07
37682619--37682725	51	2.1	51	87	3	153	48	2	10	38	1.52
37690305--37690343	21	1.9	20	84	5	51	71	2	0	25	0.98
37696612--37696681	35	2.0	35	100	0	140	25	20	11	42	1.85
37699271--37699311	2	20.5	2	100	0	82	48	0	51	0	1.00
37706514--37706580	34	2.0	34	100	0	134	11	19	11	56	1.66
37716088--37716377	142	2.0	143	97	1	555	27	33	17	21	1.96
37719230--37719296	30	2.3	29	78	2	80	56	1	7	34	1.36
37719247--37719310	28	2.2	30	83	5	78	64	3	6	26	1.33
37741838--37741896	19	3.0	20	66	16	50	55	0	0	44	0.99
37756892--37756961	33	2.1	33	86	0	95	40	7	17	35	1.77
37757389--37757435	24	2.0	22	84	8	58	74	0	8	17	1.05
37766671--37766706	14	2.4	15	86	13	56	44	0	2	52	1.15
37766897--37766934	18	2.2	18	85	4	51	47	0	2	50	1.15
37771568--37771605	17	2.2	18	85	4	51	31	26	5	36	1.79
37771822--37771900	40	2.0	40	94	0	140	29	5	5	60	1.39
37773179--37773363	92	2.0	93	96	1	345	15	11	15	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37777523--37777547	5	5.0	5	100	0	50	20	20	20	40	1.92
37778463--37778518	20	2.7	21	78	10	62	69	5	3	21	1.24
37788667--37788725	21	2.8	20	80	14	57	54	3	1	40	1.27
37788707--37788816	11	10.4	11	72	20	83	60	0	2	37	1.11
37788698--37788834	41	3.3	41	87	3	213	62	0	2	35	1.07
37788801--37788846	17	2.7	17	82	0	56	63	0	0	36	0.95
37790773--37790994	111	2.0	111	100	0	444	33	11	15	39	1.83
37791533--37791570	20	1.9	20	88	0	58	52	10	5	31	1.58
37791519--37791585	34	1.9	35	87	3	100	47	11	7	32	1.68
37791554--37791593	14	2.9	14	80	0	53	40	15	7	37	1.75
37798430--37798472	23	1.9	22	85	4	59	55	0	2	41	1.12
37799241--37799273	17	1.9	17	100	0	66	42	9	0	48	1.35
37808827--37808883	24	2.4	23	82	8	62	40	24	15	19	1.90
37812342--37812536	97	2.0	97	93	0	336	31	12	20	35	1.90
37839500--37839529	9	3.2	9	95	4	51	63	0	0	36	0.95
37840509--37840545	19	1.9	19	89	10	58	18	0	21	59	1.38
37845503--37845531	14	2.0	15	93	6	51	37	0	0	62	0.96
37845829--37845874	17	2.7	17	82	0	56	39	0	0	60	0.97
37845858--37845924	11	6.4	11	75	18	54	35	2	0	61	1.12
37845850--37845937	40	2.2	40	95	0	158	34	2	0	63	1.07
37845906--37845962	23	2.5	22	83	8	69	35	1	3	59	1.25
37846208--37846232	5	5.0	5	100	0	50	0	80	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37846332--37846390	30	1.9	31	86	3	84	20	42	0	37	1.52
37851665--37851706	17	2.5	17	88	0	57	42	38	16	2	1.61
37854241--37854304	26	2.5	26	76	0	74	40	1	14	43	1.54
37854241--37854306	13	5.1	13	67	0	51	39	1	15	43	1.55
37855854--37855885	7	4.7	7	92	7	57	53	0	0	46	1.00
37864582--37864619	19	2.1	18	85	9	51	50	0	7	42	1.31
37866687--37866737	26	2.0	24	88	7	75	41	5	9	43	1.62
37878234--37878273	20	2.0	20	85	0	53	22	7	40	30	1.81
37882376--37882410	17	2.1	17	89	5	54	34	20	0	45	1.51
37882875--37882943	21	3.5	19	76	11	59	53	1	1	43	1.18
37882891--37882937	3	15.7	3	82	8	60	59	2	0	38	1.09
37888472--37888496	1	25.0	1	100	0	50	0	0	100	0	0.00
37891228--37891261	17	1.9	17	88	5	50	55	0	8	35	1.31
37892671--37892696	6	4.3	6	100	0	52	34	34	15	15	1.89
37894575--37894624	8	6.1	8	82	13	66	58	0	2	40	1.10
37894695--37894725	7	4.4	7	95	0	53	38	0	9	51	1.35
37896357--37896407	24	2.0	25	82	17	61	33	9	3	52	1.53
37896527--37896572	12	3.3	14	79	17	51	34	0	0	65	0.93
37896669--37896694	7	3.7	7	100	0	52	61	0	0	38	0.96
37900911--37900949	3	13.0	3	94	0	69	33	2	33	30	1.72
37908395--37908471	14	5.0	15	71	20	52	42	14	9	33	1.77
37908411--37908450	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37908399--37908465	34	1.9	35	90	3	109	46	13	8	31	1.74
37909092--37909253	79	2.0	80	87	1	236	23	14	22	39	1.91
37909415--37909469	24	2.2	26	81	12	71	60	1	0	38	1.08
37909417--37909473	25	2.3	26	81	9	73	59	1	0	38	1.08
37910919--37910943	6	4.2	6	100	0	50	36	0	64	0	0.94
37917013--37917055	22	2.0	22	95	0	77	9	20	27	41	1.83
37917214--37917310	43	2.3	43	83	3	124	16	17	35	30	1.92
37917299--37917506	43	4.8	43	77	7	172	29	30	17	22	1.97
37917844--37917903	21	2.9	21	82	0	66	5	41	18	35	1.72
37917887--37918028	66	2.2	66	87	5	198	13	28	18	40	1.88
37917921--37918051	66	2.0	66	87	3	192	13	25	19	41	1.88
37923462--37924203	9	85.2	9	68	20	209	38	1	13	46	1.52
37923467--37923685	16	13.9	16	65	21	97	36	1	16	44	1.59
37923481--37923620	25	5.7	25	78	6	133	36	2	16	45	1.60
37923538--37923721	34	5.5	33	70	15	119	38	2	16	42	1.61
37923538--37923951	25	16.6	25	67	22	94	38	1	15	44	1.55
37923741--37923773	16	2.1	16	100	0	66	30	0	24	45	1.53
37923759--37924214	34	13.9	34	69	23	270	39	1	10	48	1.46
37923832--37923901	22	2.9	24	85	10	81	38	0	11	50	1.39
37923914--37923946	16	2.1	16	100	0	66	30	0	24	45	1.53
37923799--37924141	56	6.0	56	82	12	341	39	0	11	47	1.45
37923658--37924197	90	6.2	87	74	17	405	39	1	12	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37924006--37924051	22	2.1	22	95	0	83	41	0	10	47	1.38
37924062--37924112	22	2.4	22	90	3	86	41	0	9	49	1.36
37925757--37925793	11	3.4	11	96	0	65	54	5	2	37	1.38
37926984--37927035	27	1.9	27	88	0	77	50	9	0	40	1.35
37927103--37927159	10	5.7	10	91	0	96	42	14	0	43	1.44
37927103--37927159	20	2.8	20	100	0	114	42	14	0	43	1.44
37927816--37927852	10	3.7	10	92	0	65	43	13	0	43	1.44
37929807--37930066	41	6.3	43	76	9	240	39	23	22	15	1.91
37929807--37930067	82	3.2	82	90	1	382	39	22	22	14	1.91
37950757--37950821	33	1.9	34	84	3	87	32	12	26	29	1.92
37950728--37950948	101	2.2	101	82	0	262	32	14	23	28	1.95
37959340--37959371	10	3.2	10	100	0	64	18	0	0	81	0.70
37959330--37959371	20	2.2	20	86	4	59	19	4	0	76	0.96
37961120--37961276	43	3.7	43	73	6	140	26	17	28	28	1.97
37963304--37963348	20	2.4	18	85	10	63	15	26	11	46	1.79
37965340--37965489	21	7.1	21	66	8	72	44	17	20	18	1.88
37965340--37965494	42	3.7	42	77	0	166	44	16	20	18	1.87
37965340--37965494	84	1.8	84	88	0	238	44	16	20	18	1.87
37969342--37969387	14	2.9	16	75	18	51	58	2	2	36	1.22
37976057--37976213	41	3.8	42	86	6	214	29	21	28	20	1.98
37976054--37976253	41	4.9	41	81	6	208	31	20	27	21	1.98
37978661--37978697	15	2.4	16	82	17	51	35	8	0	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37978754--37978785	8	3.9	8	92	8	55	53	0	0	46	1.00
37978757--37978800	9	4.9	9	86	8	63	52	0	4	43	1.22
37983510--37983610	49	2.1	49	96	0	184	27	5	19	46	1.73
37989925--37990131	49	4.2	49	73	6	123	22	26	16	34	1.95
37990061--37990178	49	2.4	50	82	4	132	19	27	19	33	1.96
37992103--37992173	21	3.4	21	78	0	88	14	23	19	42	1.88
37992019--37992171	42	3.7	41	81	7	182	15	19	18	46	1.84
37994812--37994939	66	1.9	66	98	0	247	19	17	11	51	1.75
37997436--37997593	21	7.5	21	69	8	115	15	23	17	43	1.87
37997435--37997591	42	3.7	42	84	6	201	15	22	17	44	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172