genome.fa.s22.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  151  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43747353--43747378	8	3.2	8	100	0	52	50	0	0	50	1.00
43747402--43747468	34	2.0	34	85	2	91	46	1	2	49	1.26
43747518--43747573	16	3.3	16	72	18	51	44	1	3	50	1.29
43756084--43756157	9	7.8	9	73	11	58	66	1	5	27	1.22
43756075--43756175	10	10.4	10	71	9	68	66	0	4	27	1.19
43756075--43756174	39	2.6	37	79	13	105	66	1	5	28	1.19
43756682--43756769	38	2.4	36	80	14	92	26	2	2	69	1.12
43756710--43756778	28	2.5	27	81	9	68	24	4	1	69	1.15
43760438--43760540	27	3.8	27	91	5	156	19	21	36	22	1.95
43760602--43760648	18	2.5	20	79	10	62	63	2	34	0	1.06
43760598--43760651	22	2.4	23	84	12	76	64	1	33	0	1.04
43763972--43764012	6	6.8	6	91	0	64	0	36	29	34	1.58
43765520--43765561	16	2.7	15	85	7	57	57	2	2	38	1.25
43765672--43765745	38	1.9	38	97	0	139	39	2	4	54	1.34
43765931--43766087	22	6.8	24	73	18	122	54	14	0	31	1.45
43765976--43766213	22	11.0	22	72	17	180	55	12	0	31	1.41
43765976--43766213	49	5.5	42	72	16	186	55	12	0	31	1.41
43765917--43766079	49	3.4	47	84	5	218	53	13	0	32	1.45
43766383--43766415	3	11.3	3	87	6	50	0	36	0	63	0.95
43771623--43771668	18	2.6	18	83	16	60	67	6	6	19	1.36
43774673--43774761	25	3.5	24	76	13	81	31	20	25	22	1.98
43774577--43774769	24	7.8	25	69	18	100	34	21	24	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43774806--43774867	24	2.5	25	84	7	74	38	22	20	17	1.93
43775024--43775081	27	2.1	27	100	0	116	27	15	18	37	1.92
43779827--43779874	23	2.1	22	81	11	53	58	4	10	27	1.49
43780548--43780613	31	2.2	29	81	7	78	24	12	16	46	1.81
43788878--43788937	26	2.3	26	80	2	68	41	20	16	21	1.90
43788920--43788986	26	2.6	26	79	11	84	34	22	23	19	1.97
43789033--43789176	65	2.2	65	88	0	207	32	21	22	23	1.98
43793629--43793679	23	2.3	21	76	6	57	49	15	3	31	1.63
43793877--43794073	41	4.8	41	97	1	360	30	23	19	26	1.98
43801502--43801657	41	3.8	41	96	1	278	30	23	19	26	1.98
43805599--43805639	21	2.0	21	95	0	73	39	24	17	19	1.92
43827299--43827333	18	2.0	17	88	5	52	45	0	0	54	0.99
43827192--43827475	120	2.4	120	90	2	446	44	1	4	48	1.34
43827419--43827453	18	2.0	17	88	5	52	45	0	0	54	0.99
43827419--43827473	15	3.4	16	80	16	53	47	0	1	50	1.11
43827689--43827740	16	3.2	16	86	0	68	40	30	0	28	1.57
43829629--43829653	4	6.2	4	100	0	50	76	0	0	24	0.80
43843268--43843316	23	2.1	24	85	7	66	46	2	0	51	1.12
43843339--43843367	5	5.8	5	100	0	58	20	0	0	79	0.74
43843298--43843424	45	2.8	44	73	17	111	38	1	3	56	1.25
43859195--43859249	24	2.2	26	81	12	71	45	0	1	52	1.11
43859387--43859481	45	2.1	45	88	1	138	32	27	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43859462--43859529	16	4.2	16	96	0	118	35	36	0	27	1.58
43860625--43860816	94	2.0	94	100	0	384	25	11	20	42	1.85
43860653--43860800	46	3.2	46	62	17	115	23	12	18	45	1.84
43862553--43862595	21	2.0	21	86	8	61	34	0	6	58	1.25
43862882--43862912	16	1.9	16	100	0	62	19	38	6	35	1.77
43867796--43868325	114	4.7	113	87	4	764	41	14	17	25	1.88
43867796--43868325	226	2.3	229	88	5	786	41	14	17	25	1.88
43868441--43868466	10	2.6	10	100	0	52	7	0	0	92	0.39
43868326--43868570	112	2.2	112	93	3	411	22	14	13	49	1.78
43872723--43872775	21	2.3	23	84	9	65	52	1	0	45	1.11
43875292--43875336	7	6.3	7	84	5	63	15	13	13	57	1.65
43875583--43875688	37	2.9	37	89	0	167	33	4	14	48	1.64
43875688--43875762	9	8.4	9	83	2	89	34	8	21	36	1.83
43875688--43875756	26	2.6	27	88	2	95	33	8	21	36	1.84
43875922--43875946	12	2.1	12	100	0	50	16	24	36	24	1.94
43886386--43886429	22	2.0	22	100	0	88	13	9	18	59	1.60
43891526--43891573	16	2.9	16	84	9	62	35	0	14	50	1.44
43893361--43893474	21	5.4	21	82	0	138	15	25	16	42	1.88
43898581--43898620	12	3.3	12	78	0	53	60	17	12	10	1.59
43898572--43898620	24	2.0	24	100	0	98	55	20	12	12	1.68
43898913--43898940	13	2.2	13	100	0	56	46	25	7	21	1.76
43899896--43899988	25	3.8	24	83	11	118	35	19	24	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43903273--43903367	40	2.3	40	90	3	145	0	28	8	63	1.24
43904353--43904545	45	4.6	44	78	17	205	27	22	16	33	1.95
43904421--43904484	32	2.0	32	100	0	128	28	21	18	31	1.97
43904376--43904530	77	2.0	78	94	1	276	28	21	16	33	1.95
43904453--43904545	46	2.0	45	93	2	159	29	21	16	33	1.95
43909673--43909871	98	2.0	100	91	3	323	23	22	8	45	1.79
43914975--43915004	16	1.9	16	93	6	53	20	6	0	73	1.05
43915388--43915414	2	13.5	2	100	0	54	51	0	0	48	1.00
43915574--43915598	13	1.9	13	100	0	50	68	0	0	32	0.90
43915521--43915620	51	2.0	51	90	4	157	63	4	4	29	1.31
43915741--43915874	52	2.6	51	84	4	171	35	15	6	41	1.74
43927685--43927744	29	2.1	29	93	0	102	21	33	11	33	1.90
43928647--43928685	18	2.2	17	86	13	53	33	0	20	46	1.51
43928911--43929008	23	4.3	23	90	2	162	20	21	26	31	1.98
43928913--43929001	45	2.0	45	95	0	160	19	22	26	31	1.97
43934731--43935003	36	7.0	36	78	15	294	28	20	13	37	1.90
43934767--43935039	82	3.3	82	95	0	492	28	20	12	37	1.90
43934687--43934921	118	2.0	116	91	1	380	28	20	14	36	1.92
43934687--43935003	118	2.7	113	83	11	324	28	20	14	36	1.92
43939354--43939395	23	1.9	21	90	9	66	64	2	7	26	1.32
43939353--43939400	21	2.3	20	83	16	62	66	4	6	22	1.32
43943591--43943624	15	2.3	15	94	0	59	23	11	23	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43943833--43943915	31	2.7	31	96	0	148	25	8	14	51	1.70
43945148--43945189	15	2.6	16	77	11	50	66	2	2	28	1.16
43951518--43951568	13	3.8	13	75	25	52	60	0	1	37	1.08
43957068--43957121	27	2.0	27	96	0	99	38	9	22	29	1.85
43966848--43966923	38	2.0	38	97	0	143	18	18	25	38	1.93
43974347--43974372	12	2.2	12	100	0	52	76	0	0	23	0.78
43984857--43984908	24	2.2	24	89	0	77	55	9	1	32	1.43
43987472--43987508	19	1.9	19	94	0	65	35	0	18	45	1.50
43987720--43988059	41	8.3	41	90	0	527	29	20	28	22	1.98
43987720--43988053	82	4.1	82	100	0	668	29	20	28	22	1.98
43988305--43988515	103	2.1	103	99	0	415	42	9	16	31	1.80
43994463--43994499	19	1.9	19	94	0	65	35	0	18	45	1.50
43994711--43995050	41	8.3	41	90	0	527	29	20	27	22	1.98
43994711--43995044	82	4.1	82	99	0	650	29	20	28	22	1.98
43995298--43995508	103	2.1	103	99	0	415	42	9	16	31	1.80
43996849--43996900	24	2.2	24	89	0	77	55	9	1	32	1.43
44001694--44001729	8	4.4	8	89	6	54	44	0	0	55	0.99
44008763--44008813	26	2.0	26	96	0	93	41	17	7	33	1.79
44009973--44010004	12	2.6	13	90	9	50	53	0	6	40	1.26
44015650--44015674	12	2.1	12	100	0	50	60	0	16	24	1.36
44020419--44020466	21	2.3	21	85	7	71	31	12	0	56	1.37
44020391--44020488	28	3.5	28	77	18	105	31	17	0	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44020388--44020496	56	1.9	58	85	10	154	31	16	0	52	1.44
44021756--44021843	20	4.5	18	69	16	59	37	14	5	42	1.70
44021947--44022033	20	4.3	20	80	0	102	42	19	5	32	1.75
44021927--44022041	40	2.9	40	84	0	122	41	17	6	33	1.76
44022114--44022175	20	3.1	20	83	0	79	38	17	4	38	1.71
44022114--44022224	20	5.5	21	71	10	70	38	16	6	38	1.74
44022272--44022318	20	2.4	20	85	3	69	46	21	0	31	1.51
44022334--44022372	20	2.0	19	85	5	51	38	20	0	41	1.53
44022420--44022494	20	3.8	20	73	5	62	40	17	5	37	1.72
44022619--44022705	20	4.3	20	78	8	95	39	17	2	41	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172