genome.fa.s22.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  53  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14322958--14323297	51	6.7	51	78	7	316	30	27	17	25	1.97
14322958--14323298	101	3.4	102	81	6	327	30	27	17	25	1.97
14322958--14323297	152	2.2	152	91	2	547	30	27	17	25	1.97
14326462--14326508	13	3.7	12	86	11	58	27	2	12	57	1.47
14330490--14330594	6	17.5	6	100	0	210	32	0	17	50	1.46
14331231--14331283	22	2.5	21	80	14	65	67	1	5	24	1.22
14331842--14331953	57	2.0	57	92	0	188	25	17	15	41	1.88
14333426--14333581	48	3.2	48	94	1	278	26	19	29	24	1.99
14334037--14334091	18	3.1	18	73	21	53	5	7	5	81	0.97
14337960--14338004	23	2.0	23	95	0	81	28	17	24	28	1.97
14338831--14338872	11	3.6	11	81	18	50	69	0	26	4	1.08
14338918--14338979	22	2.9	22	90	2	90	8	8	48	35	1.62
14341020--14341114	33	2.9	33	85	0	118	16	23	18	41	1.90
14345604--14345653	26	1.9	26	91	0	82	50	16	6	28	1.68
14350827--14351149	163	2.0	163	92	0	538	32	11	20	34	1.89
14355413--14355491	22	3.3	22	69	24	70	43	2	20	34	1.65
14355393--14355494	50	2.0	50	100	0	204	47	1	17	33	1.59
14356062--14356269	91	2.3	91	91	0	326	46	2	4	46	1.37
14356184--14356244	28	2.2	28	85	5	81	45	0	3	50	1.17
14356102--14356244	44	3.2	43	69	20	121	46	2	3	48	1.31
14356184--14356256	26	2.7	29	77	14	75	47	1	2	47	1.24
14356296--14356484	59	3.2	57	68	19	152	41	3	4	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14356323--14356521	66	3.2	64	68	19	186	41	3	6	49	1.44
14356285--14356582	120	2.5	120	93	1	517	42	2	5	49	1.37
14356358--14356545	61	3.1	61	69	17	192	42	1	6	48	1.39
14356410--14356461	15	3.6	15	80	12	56	44	0	1	53	1.11
14356526--14356560	18	2.0	17	88	5	52	45	0	0	54	0.99
14356794--14356832	16	2.4	16	91	0	60	30	30	0	38	1.58
14356802--14356863	16	3.9	16	91	0	79	32	37	0	30	1.58
14363897--14363946	23	2.2	23	82	10	59	68	18	4	10	1.34
14364987--14365058	25	2.8	26	80	4	83	25	25	22	27	2.00
14367478--14369757	752	3.0	757	85	4	3128	39	21	13	25	1.90
14372764--14372811	20	2.4	20	92	0	78	31	0	29	39	1.57
14372864--14373295	35	12.2	35	68	15	129	21	24	22	31	1.98
14372843--14373048	69	3.0	69	83	3	245	19	27	24	28	1.99
14373073--14373253	34	5.3	35	74	9	106	22	22	23	32	1.98
14372939--14373161	113	2.0	113	82	3	270	23	25	20	30	1.98
14373052--14373295	69	3.5	68	79	6	215	22	22	21	33	1.98
14372870--14373230	182	2.0	182	84	1	472	22	24	21	31	1.98
14373140--14373256	34	3.4	34	73	11	112	21	22	26	29	1.99
14382369--14382485	22	5.9	21	63	23	65	11	17	29	41	1.85
14382376--14382485	38	2.9	37	86	5	148	11	18	30	39	1.86
14383606--14383652	16	2.8	16	76	17	51	31	10	4	53	1.55
14397624--14397695	29	2.4	30	88	4	110	19	26	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14397624--14397753	30	4.4	30	76	5	111	23	27	12	36	1.90
14397758--14397828	30	2.4	30	85	0	97	28	22	12	36	1.91
14398780--14398832	25	2.2	24	83	6	63	69	3	5	20	1.25
14399090--14399242	19	7.7	21	75	16	74	40	13	5	39	1.69
14399090--14399147	22	2.6	22	81	7	64	43	17	1	37	1.59
14399126--14399293	19	8.8	19	85	0	219	37	13	8	41	1.74
14399119--14399293	57	3.1	57	91	1	264	37	13	8	41	1.74
14399622--14400513	132	6.8	132	95	0	1554	28	24	18	27	1.98
14400239--14400433	44	4.4	44	66	14	123	28	24	17	29	1.97
14400569--14400717	19	7.8	19	86	0	217	38	12	8	40	1.73
14417243--14417274	16	2.0	16	93	0	55	28	15	6	50	1.68
14417244--14417282	16	2.4	16	86	0	51	25	17	5	51	1.66
14418624--14418679	19	2.7	20	76	21	53	44	16	1	37	1.58
14420198--14420296	23	4.3	23	86	0	144	30	26	21	22	1.99
14420198--14420295	46	2.1	46	92	0	160	30	26	21	21	1.98
14420522--14420560	18	2.2	17	86	13	53	48	20	0	30	1.50
14422506--14422533	10	2.8	10	100	0	56	39	10	0	50	1.37
14422940--14423038	23	4.3	23	84	0	135	30	26	20	23	1.98
14422940--14423037	46	2.1	46	90	0	151	30	26	20	22	1.98
14426249--14426347	23	4.3	23	76	2	110	31	24	19	25	1.98
14429254--14429312	30	2.0	30	86	0	82	28	23	11	35	1.91
14429300--14429376	30	2.6	30	78	0	100	20	24	10	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14429360--14429518	29	5.4	29	77	12	155	24	24	12	38	1.90
14429360--14429531	59	2.9	60	78	10	185	23	23	13	38	1.91
14429330--14429518	89	2.1	89	86	4	258	23	24	13	39	1.90
14440851--14440891	20	2.0	20	90	0	64	39	21	31	7	1.81
14449925--14450051	45	2.8	45	82	0	155	46	9	18	25	1.79
14450191--14450246	27	2.1	27	89	0	85	37	17	25	19	1.94
14454816--14454857	20	2.1	20	86	0	57	19	14	0	66	1.25
14459690--14459714	13	1.9	13	100	0	50	68	0	0	32	0.90
14462815--14462992	27	6.6	27	74	6	119	28	16	26	29	1.97
14462812--14462992	82	2.2	81	81	4	204	28	16	25	29	1.97
14470820--14470997	27	6.6	27	74	6	119	28	16	26	29	1.97
14470817--14470997	82	2.2	81	81	4	204	28	16	25	29	1.97
14475408--14475516	57	1.9	57	86	3	157	33	11	14	40	1.81
14475408--14475547	57	2.5	57	80	9	142	34	12	14	39	1.83
14483044--14483127	31	2.8	29	85	12	107	28	14	20	36	1.91
14483044--14483172	31	4.2	28	78	14	105	31	14	16	37	1.89
14483285--14483346	30	2.1	29	84	3	79	48	8	8	35	1.62
14484908--14484974	31	2.1	32	86	2	91	26	20	7	44	1.78
14487642--14487692	26	2.0	26	96	0	93	29	35	23	11	1.90
14487548--14487770	103	2.2	104	92	2	369	31	31	18	17	1.95
14490958--14490982	12	2.1	12	100	0	50	60	16	8	16	1.58
14491104--14491145	19	2.2	19	83	8	50	83	7	7	2	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14494151--14494294	40	3.6	40	79	3	155	38	15	26	19	1.91
14495068--14495116	16	3.1	16	74	11	55	42	14	0	42	1.45
14506570--14506793	40	5.6	40	87	0	279	36	19	27	16	1.94
14507551--14507599	16	3.1	16	74	11	55	42	14	0	42	1.45
14515098--14515177	38	2.1	37	86	2	106	51	2	2	43	1.28
14515160--14515207	5	9.8	5	97	2	89	41	0	0	58	0.98
14515242--14515308	12	5.8	12	75	22	63	65	0	32	1	1.02
14515240--14515305	25	2.7	25	84	9	82	68	0	30	1	0.99
14515249--14515314	21	3.0	21	76	20	71	65	0	33	1	1.02
14516157--14516282	37	3.2	39	78	12	150	25	16	23	34	1.95
14516140--14516260	37	3.1	37	77	12	136	23	17	23	34	1.96
14516457--14516499	22	2.0	22	86	4	61	46	2	25	25	1.65
14524855--14524944	7	13.0	7	75	2	74	34	0	33	32	1.58
14524842--14524927	14	6.2	14	76	2	84	37	0	31	31	1.58
14524842--14524916	21	3.3	21	73	20	60	37	0	33	29	1.58
14524855--14524927	27	2.6	28	86	4	103	35	0	34	30	1.58
14534903--14534940	17	2.3	17	86	13	53	71	5	0	23	1.07
14535731--14535882	48	3.2	48	85	6	218	32	14	18	34	1.91
14535731--14535904	48	3.6	48	85	3	206	33	14	18	33	1.92
14540894--14541209	168	1.9	168	86	2	447	35	16	22	25	1.95
14546630--14546669	21	1.9	21	84	0	53	40	25	12	22	1.89
14552542--14552864	168	1.9	168	84	6	431	35	15	22	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14564286--14564406	41	3.0	41	79	2	127	29	20	19	30	1.97
14573864--14573944	41	2.0	41	82	4	101	30	22	16	30	1.95
14575287--14575324	11	3.6	11	89	6	53	52	5	2	39	1.38
14575492--14575517	13	2.0	13	100	0	52	46	23	0	30	1.53
14587780--14587821	13	3.4	13	77	12	52	50	21	7	21	1.72
14587780--14587830	24	2.1	24	85	7	68	52	17	9	19	1.72
14587859--14588002	27	5.4	27	77	5	132	20	19	22	37	1.94
14587859--14588002	54	2.7	53	81	11	152	20	19	22	37	1.94
14601504--14601529	10	2.6	10	100	0	52	50	7	0	42	1.31
14605784--14605814	16	1.9	16	93	0	53	48	16	0	35	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172