genome.fa.s22.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  42  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10955493--10955677	41	4.5	41	83	6	207	22	22	24	30	1.99
10955493--10955677	81	2.3	82	86	1	246	22	22	24	30	1.99
10956190--10956226	15	2.5	15	95	0	65	16	10	18	54	1.71
10957925--10957957	17	1.9	17	100	0	66	24	9	18	48	1.76
10958329--10958620	43	6.8	43	88	1	397	21	17	31	28	1.97
10968852--10968968	27	4.4	27	80	11	107	29	17	24	28	1.98
10968864--10968983	27	4.4	27	80	8	127	28	18	25	27	1.98
10969800--10969838	16	2.3	16	86	8	51	2	28	0	69	1.02
10978088--10978134	21	2.2	21	96	0	85	29	40	12	17	1.86
10978088--10978145	21	2.8	21	91	0	80	31	41	12	15	1.84
10979085--10979136	25	2.1	25	100	0	104	26	11	19	42	1.85
10988181--10988221	20	2.0	20	85	0	55	39	7	17	36	1.77
10989073--10989157	30	2.9	30	84	5	93	12	29	29	28	1.94
10998991--10999055	29	2.4	26	78	16	62	41	3	1	53	1.25
11004695--11004745	21	2.4	22	78	18	54	50	9	0	39	1.35
11006740--11006921	45	4.1	45	83	2	226	35	28	15	20	1.93
11006745--11006921	89	2.0	88	85	3	239	35	28	15	20	1.94
11011658--11011696	6	6.5	6	100	0	78	84	0	0	15	0.62
11012163--11012207	19	2.4	18	82	10	56	68	8	8	13	1.38
11014944--11014985	13	3.3	13	78	15	52	2	19	0	78	0.86
11016805--11016838	16	2.1	17	88	5	52	23	5	0	70	1.09
11036808--11036884	28	2.8	28	86	4	102	23	22	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11037257--11037424	27	6.2	27	88	4	214	17	20	19	42	1.89
11037273--11037424	81	1.9	81	91	0	250	17	19	19	42	1.89
11038022--11038078	24	2.2	24	84	9	69	31	42	0	26	1.56
11044609--11044641	14	2.4	14	100	0	66	18	0	42	39	1.50
11054803--11054860	25	2.3	25	84	0	71	32	18	12	36	1.88
11054816--11054864	25	2.0	25	95	0	89	32	14	14	38	1.86
11054816--11054876	25	2.4	25	86	5	88	36	14	13	36	1.85
11068114--11068249	49	2.8	49	90	0	209	24	25	20	30	1.99
11068212--11068341	50	2.6	50	82	0	152	21	30	21	26	1.98
11068251--11068357	50	2.1	50	82	0	133	20	31	21	26	1.98
11078356--11078431	39	1.9	39	94	0	134	27	17	17	38	1.91
11083104--11083141	5	7.6	5	82	11	51	18	0	2	78	0.86
11088040--11088251	94	2.3	93	82	4	239	27	27	25	20	1.99
11088694--11088736	18	2.4	18	80	7	52	23	4	0	72	1.04
11088792--11088846	14	3.7	15	77	13	60	23	5	3	67	1.28
11090248--11090292	6	7.5	6	100	0	90	0	15	0	84	0.62
11090241--11090280	18	2.2	18	86	0	53	7	12	0	80	0.91
11091906--11092060	77	2.0	77	92	0	256	30	8	25	34	1.86
11099504--11099534	14	2.1	15	94	5	55	35	6	3	54	1.42
11102952--11103009	26	2.2	26	81	6	64	63	8	5	22	1.42
11108610--11108634	13	1.9	13	100	0	50	48	16	0	36	1.46
11108940--11108977	18	2.1	18	85	9	51	44	2	21	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11116037--11116071	18	1.9	18	88	0	52	42	2	2	51	1.31
11129905--11129964	18	3.4	18	75	11	61	65	1	5	28	1.23
11146474--11146543	25	2.8	25	82	0	95	25	25	24	24	2.00
11151967--11151997	9	3.4	9	90	0	53	25	12	22	38	1.90
11162776--11162819	18	2.4	18	85	11	54	40	45	2	11	1.53
11163622--11163811	56	3.4	54	84	7	220	31	11	13	43	1.80
11163621--11163833	111	1.9	113	80	7	256	30	12	14	42	1.83
11166587--11166653	27	2.5	27	83	9	100	26	7	22	43	1.80
11166587--11166653	9	7.4	9	83	9	75	26	7	22	43	1.80
11177655--11177720	29	2.2	32	78	15	77	56	3	3	37	1.30
11178234--11178273	17	2.4	17	100	0	80	50	5	5	40	1.46
11179909--11179938	15	2.0	15	93	0	51	16	6	10	66	1.41
11186921--11186982	27	2.3	28	77	8	74	33	16	25	24	1.95
11191254--11191311	30	1.9	30	82	6	73	44	5	18	31	1.72
11206064--11206112	5	10.0	5	93	4	73	24	0	0	75	0.80
11210772--11210813	21	2.0	21	85	0	57	28	26	19	26	1.98
11214312--11214413	50	2.0	50	82	0	123	34	6	31	27	1.83
11217257--11217378	23	5.3	23	87	6	185	23	20	25	30	1.99
11225292--11225328	18	2.1	18	89	0	56	54	0	0	45	1.00
11233173--11233202	6	5.0	6	100	0	60	33	33	16	16	1.92
11240382--11240414	16	2.1	16	88	11	50	42	0	0	57	0.98
11246560--11246785	113	2.0	113	80	3	258	32	11	20	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11254675--11254710	3	12.0	3	100	0	72	33	0	0	66	0.92
11259678--11259720	21	2.0	21	90	0	68	20	37	9	32	1.85
11266175--11266762	320	1.8	320	91	0	980	35	20	14	30	1.92
11273593--11273629	18	2.1	18	89	0	56	29	5	35	29	1.80
11276736--11276891	79	2.0	79	94	0	276	28	14	10	47	1.76
11280935--11280964	15	2.0	15	93	0	51	23	16	6	53	1.66
11286062--11286137	27	2.8	27	85	0	116	34	18	27	19	1.95
11287878--11288009	58	2.2	60	81	9	146	40	3	6	50	1.45
11291309--11291343	18	2.0	18	88	5	54	5	20	11	62	1.48
11298646--11298693	21	2.2	23	92	7	82	41	2	2	54	1.24
11300331--11300377	24	1.9	24	82	4	58	25	4	36	34	1.76
11308084--11308121	17	2.2	18	86	13	53	31	0	5	63	1.17
11308743--11308791	21	2.3	21	79	6	55	53	0	10	36	1.35
11315385--11315421	17	2.2	17	95	4	67	24	0	37	37	1.56
11315657--11315691	18	2.0	17	88	5	52	54	0	0	45	0.99
11315640--11316599	120	8.2	120	93	5	1660	48	5	2	43	1.40
11315897--11315931	18	2.0	17	88	5	52	54	0	0	45	0.99
11316055--11316599	119	4.8	112	91	6	893	47	6	2	43	1.42
11315939--11316599	228	2.9	229	98	0	1261	47	6	2	43	1.42
11321758--11321799	22	1.9	22	90	0	66	54	16	7	21	1.65
11321981--11322041	25	2.5	25	94	2	106	42	19	8	29	1.80
11325086--11325155	28	2.6	29	81	18	73	52	0	7	40	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11325626--11325669	17	2.4	19	81	7	56	52	4	0	43	1.22
11326321--11326363	22	2.0	22	85	0	59	13	16	23	46	1.83
11326437--11326573	43	3.2	43	82	1	150	33	29	16	20	1.94
11326437--11326590	43	3.6	43	81	2	141	37	27	14	21	1.92
11330838--11330919	38	2.2	38	88	0	119	56	8	14	20	1.65
11331689--11331773	39	2.2	39	84	0	107	20	21	20	38	1.93
11332315--11332384	7	10.0	7	77	0	59	30	48	0	21	1.50
11332315--11332384	21	3.3	21	74	7	70	30	48	0	21	1.50
11332190--11332548	183	2.0	184	94	0	639	39	31	1	27	1.65
11332498--11332549	7	7.4	7	84	0	68	34	48	0	17	1.48
11332490--11332549	21	2.8	20	78	9	66	33	46	0	20	1.51
11332645--11332677	15	2.3	15	89	5	50	30	30	3	36	1.73
11332948--11333174	81	2.8	80	84	4	294	32	22	21	23	1.98
11332948--11333174	41	5.6	41	83	5	300	32	22	21	23	1.98
11336986--11337155	72	2.4	72	88	4	256	54	14	5	25	1.60
11337580--11337645	18	3.7	18	91	0	105	40	13	12	33	1.82
11340582--11340629	20	2.5	19	80	6	60	64	6	14	14	1.47
11353964--11354039	30	2.5	30	89	0	116	27	25	9	38	1.86
11354024--11354221	30	6.7	30	77	8	181	21	26	14	38	1.91
11353994--11354185	60	3.2	60	78	1	215	21	27	13	36	1.91
11353994--11354185	90	2.1	90	84	3	244	21	27	13	36	1.91
11355932--11355971	19	2.1	19	86	9	55	17	37	2	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11357426--11357523	33	2.9	33	84	7	108	36	22	10	30	1.87
11357738--11357893	41	3.8	41	89	6	226	27	22	21	28	1.99
11364586--11364683	33	2.9	33	84	7	108	36	22	10	30	1.87
11364898--11365053	41	3.8	41	89	6	235	28	22	20	28	1.98
11367059--11367100	21	2.0	21	86	4	59	42	2	4	50	1.36
11367208--11367247	20	2.0	20	90	9	64	40	12	10	37	1.77
11389820--11389924	19	5.8	18	69	22	69	51	0	14	33	1.49
11389818--11389922	54	1.9	54	98	0	201	50	0	15	33	1.50
11390261--11390326	30	2.2	30	88	0	96	22	24	33	19	1.97
11391772--11391900	35	3.7	35	76	8	145	30	17	24	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172