genome.fa.s22.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  161  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47250575--47250618	18	2.4	18	80	0	52	43	0	0	56	0.99
47252913--47252952	20	2.0	20	90	0	62	50	12	10	27	1.72
47252901--47252967	34	1.9	35	87	3	100	46	11	8	32	1.72
47253544--47253616	25	3.2	25	59	22	59	32	12	19	35	1.89
47253539--47253647	44	2.5	44	95	0	191	30	14	19	35	1.92
47257231--47257286	22	2.5	23	82	2	69	51	1	1	44	1.22
47257262--47257301	16	2.5	16	91	0	62	47	2	7	42	1.45
47257312--47257481	59	2.9	59	96	0	313	40	4	9	45	1.57
47265820--47266039	109	2.1	104	86	6	298	21	10	22	45	1.82
47266215--47266252	18	2.1	18	100	0	76	31	0	21	47	1.51
47273064--47273441	66	5.7	66	91	1	607	40	13	23	23	1.89
47273450--47273501	21	2.5	21	80	0	59	28	19	21	30	1.97
47273494--47273640	66	2.2	66	93	0	249	42	14	21	21	1.89
47273314--47273679	174	2.1	174	86	1	518	39	15	22	22	1.92
47273624--47273683	21	2.9	21	84	0	75	36	13	23	26	1.92
47274423--47274512	33	2.7	33	93	3	146	44	14	14	26	1.83
47274494--47274535	21	2.0	21	100	0	84	47	9	14	28	1.75
47274515--47275320	347	2.3	346	95	0	1434	31	17	19	32	1.94
47288131--47288164	16	2.1	16	89	10	52	82	2	8	5	0.93
47288131--47288164	17	2.1	16	88	5	50	82	2	8	5	0.93
47288383--47288413	8	3.8	8	95	4	53	25	12	51	9	1.70
47288892--47289271	41	8.7	45	73	11	249	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47288746--47289143	218	1.8	218	84	4	552	28	23	19	28	1.98
47288891--47289271	131	2.9	131	91	0	595	28	22	18	30	1.98
47288771--47289271	44	11.5	42	72	10	287	27	22	19	30	1.98
47288939--47289341	131	3.1	127	84	5	409	29	21	17	31	1.97
47289610--47289937	43	7.5	43	67	16	190	27	24	20	27	1.99
47289543--47289973	88	4.9	88	93	2	674	26	23	21	28	1.99
47289653--47289973	44	7.3	44	68	15	234	26	23	21	28	1.99
47292103--47292131	8	3.6	8	100	0	58	13	0	13	72	1.13
47298002--47298035	16	2.1	16	89	10	52	82	2	8	5	0.93
47298002--47298035	17	2.1	16	88	5	50	82	2	8	5	0.93
47298256--47298286	8	3.8	8	95	4	53	25	12	51	9	1.70
47305080--47305161	40	2.2	36	79	12	85	35	1	2	60	1.17
47306599--47306647	3	16.3	3	86	0	71	67	0	30	2	1.02
47306947--47307049	36	2.9	35	81	8	127	18	5	25	50	1.69
47306971--47307033	20	3.3	20	69	24	64	17	4	25	52	1.64
47308431--47308484	28	1.9	28	84	0	72	48	12	7	31	1.69
47311548--47311687	65	2.2	65	92	0	226	34	22	20	22	1.97
47314136--47314208	12	6.1	12	84	6	67	57	9	8	24	1.58
47314136--47314197	18	3.4	18	77	4	63	58	11	6	24	1.56
47314145--47314178	6	5.7	6	92	0	59	64	14	2	17	1.40
47314652--47314691	21	1.9	21	94	0	71	22	30	20	27	1.98
47314966--47315027	31	2.1	28	82	11	72	30	14	6	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47316670--47316701	7	4.6	7	96	0	55	12	0	3	84	0.74
47316670--47316708	14	2.7	14	88	4	60	15	0	5	79	0.90
47316670--47316724	22	2.5	23	80	11	62	12	1	9	76	1.10
47326348--47326393	23	2.0	24	86	4	67	28	4	13	54	1.57
47334966--47335022	25	2.4	24	78	16	64	54	1	1	42	1.21
47343960--47343998	14	2.8	14	88	0	60	43	2	5	48	1.38
47354907--47354952	24	1.9	24	82	8	58	65	4	0	30	1.12
47358783--47358837	27	2.0	28	85	7	76	47	0	14	38	1.45
47358785--47358849	27	2.5	24	71	21	60	49	0	15	35	1.45
47366771--47366820	26	1.9	26	87	0	73	48	8	8	36	1.62
47367781--47367833	28	1.9	28	92	3	90	47	11	20	20	1.81
47371422--47371463	3	14.0	3	100	0	84	66	0	33	0	0.92
47371664--47371765	52	2.0	52	88	3	152	51	6	7	33	1.57
47375519--47375583	31	2.1	31	97	0	121	27	13	20	38	1.90
47387791--47387820	3	10.0	3	100	0	60	33	0	0	66	0.92
47392809--47392837	4	7.2	4	100	0	58	24	24	24	27	2.00
47392836--47392879	3	15.0	3	95	4	81	31	0	0	68	0.90
47393744--47393940	102	1.9	101	87	3	288	42	2	7	47	1.45
47406155--47406181	5	5.4	5	100	0	54	22	18	18	40	1.91
47408093--47408150	31	1.9	30	83	16	75	43	8	12	36	1.73
47408665--47408737	28	2.6	27	80	8	74	19	10	12	57	1.64
47411212--47411251	2	20.5	2	89	5	64	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47418566--47418604	20	2.0	20	89	0	60	35	0	0	64	0.94
47419471--47419514	21	2.2	20	91	4	70	6	20	4	68	1.31
47427507--47427828	162	2.0	160	84	3	421	35	21	21	21	1.96
47432421--47432446	13	2.0	13	100	0	52	30	7	15	46	1.74
47445816--47445925	37	3.1	36	76	10	109	31	19	11	37	1.88
47457990--47458048	22	2.6	21	82	15	57	49	0	1	49	1.11
47460331--47460370	16	2.5	17	88	8	57	27	0	0	72	0.85
47460767--47461022	138	1.8	139	79	5	295	35	7	15	41	1.75
47461392--47461450	31	1.9	31	89	0	91	47	1	3	47	1.29
47461946--47462092	74	2.0	74	89	1	224	31	23	14	29	1.95
47466410--47466459	26	2.0	25	84	7	66	18	14	22	46	1.84
47475104--47475268	58	2.9	58	94	2	289	31	14	25	28	1.95
47475206--47475237	7	4.6	7	96	0	55	40	9	31	18	1.83
47477465--47477541	30	2.5	31	81	10	95	45	5	7	41	1.55
47477797--47477835	17	2.3	17	82	8	53	25	2	5	66	1.25
47487074--47487116	20	2.2	20	95	4	79	32	4	0	62	1.15
47487033--47487107	30	2.5	28	89	8	105	36	5	0	58	1.21
47487022--47487088	11	6.4	11	71	22	54	37	5	0	56	1.24
47490887--47490927	21	2.0	21	90	0	64	24	17	26	31	1.97
47491837--47491930	49	1.9	49	95	0	170	43	14	15	25	1.86
47492000--47492092	3	31.0	3	97	0	177	0	34	0	65	0.93
47501626--47501677	23	2.2	24	86	6	79	42	15	7	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47501633--47501680	23	2.1	23	96	0	87	39	18	8	33	1.81
47504567--47504603	18	2.1	18	89	0	56	29	0	0	70	0.88
47509219--47509365	42	3.5	42	84	3	172	45	18	20	15	1.85
47509219--47509365	21	7.0	21	70	4	109	45	18	20	15	1.85
47510404--47510453	25	2.0	25	81	14	59	32	6	6	56	1.48
47511704--47511749	6	7.7	6	100	0	92	32	0	17	50	1.47
47513122--47513234	56	2.0	56	94	0	199	26	15	28	29	1.96
47520616--47520689	25	3.0	25	74	7	78	35	21	22	20	1.96
47526389--47526413	13	1.9	13	100	0	50	32	0	4	64	1.12
47529618--47529676	29	2.0	30	90	3	93	37	13	37	11	1.82
47535642--47535674	17	1.9	17	93	0	57	63	0	0	36	0.95
47536224--47536266	19	2.3	19	81	14	54	16	4	16	62	1.48
47538128--47538205	26	3.2	26	59	23	60	57	6	16	19	1.60
47539937--47539963	14	1.9	14	100	0	54	22	3	0	74	0.98
47540725--47540811	3	28.0	3	76	15	79	32	3	2	62	1.25
47545570--47545692	40	3.1	38	74	22	126	71	7	9	11	1.31
47545570--47545696	46	2.9	45	76	15	131	71	7	10	11	1.30
47546578--47546633	7	8.3	7	78	7	53	67	0	14	17	1.22
47546575--47546633	27	2.1	28	85	14	79	66	0	15	18	1.26
47547905--47548741	44	18.8	46	70	12	320	29	19	23	27	1.98
47547993--47548389	134	2.9	134	86	4	507	29	20	23	26	1.99
47548350--47548602	134	1.9	134	79	6	289	28	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47548682--47549607	44	21.3	44	75	7	678	31	22	22	23	1.99
47548710--47549607	87	10.3	87	75	5	690	31	22	22	23	1.98
47548699--47549604	262	3.5	261	79	7	860	31	22	22	23	1.98
47548710--47549604	175	5.1	175	82	6	887	31	22	22	23	1.98
47548968--47549644	131	5.2	131	81	5	608	30	22	22	23	1.99
47550445--47550471	14	1.9	14	100	0	54	22	3	0	74	0.98
47551181--47551267	3	28.0	3	76	15	79	32	3	2	62	1.25
47557367--47557409	8	5.1	8	86	8	59	34	0	0	65	0.93
47557367--47557409	17	2.6	16	85	10	59	34	0	0	65	0.93
47557684--47557749	21	3.1	21	78	10	71	13	6	6	74	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172