genome.fa.s22.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  91  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26374354--26374400	16	2.8	16	84	12	51	27	0	4	68	1.08
26382258--26382317	20	3.1	19	73	20	61	36	6	15	41	1.73
26382820--26382880	31	2.0	31	83	0	77	19	42	18	19	1.89
26390872--26390914	18	2.7	15	83	16	59	65	4	2	27	1.25
26394796--26394926	44	3.0	44	86	6	176	44	11	19	24	1.84
26398415--26398483	28	2.5	27	79	11	77	50	13	10	26	1.72
26400866--26400972	18	5.8	18	72	15	85	9	26	1	62	1.36
26400873--26400954	39	2.1	39	88	4	121	9	28	2	59	1.42
26402945--26402978	11	3.1	11	91	0	50	17	20	20	41	1.91
26405331--26405395	27	2.4	27	80	12	71	55	1	7	35	1.38
26406098--26406171	21	3.7	20	85	8	105	37	14	9	37	1.79
26406098--26406174	19	3.8	19	81	10	82	37	15	9	37	1.79
26409262--26409308	14	3.2	15	80	11	53	17	2	34	46	1.59
26409341--26409482	28	4.9	27	80	12	140	42	0	16	40	1.53
26409390--26409455	32	2.1	32	97	0	123	43	0	13	42	1.44
26409362--26409482	60	2.0	60	88	3	181	43	0	14	41	1.50
26409337--26409499	87	1.8	90	84	3	224	38	0	18	42	1.55
26409358--26409498	28	4.9	29	79	11	96	41	0	16	41	1.53
26409578--26410002	126	3.4	125	86	0	573	40	15	16	27	1.89
26410084--26410146	25	2.5	25	89	0	90	52	1	22	23	1.56
26413165--26413344	62	3.0	60	86	7	233	50	7	5	36	1.53
26416169--26416201	11	2.9	12	86	13	52	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26416322--26416385	30	2.2	30	88	2	94	57	10	3	28	1.48
26416409--26416445	14	2.6	14	91	0	56	64	10	5	18	1.43
26419483--26419527	16	2.8	16	77	12	56	37	0	24	37	1.56
26419705--26419756	26	1.9	28	84	7	72	44	0	3	51	1.19
26419719--26419801	43	1.9	43	83	9	107	44	0	1	54	1.08
26419737--26419775	15	2.5	15	88	12	53	41	0	0	58	0.98
26419827--26419891	34	1.9	34	90	0	103	49	1	1	47	1.20
26421828--26421857	12	2.4	12	94	5	51	10	33	13	43	1.77
26427308--26427413	53	2.0	53	98	0	203	35	14	18	31	1.91
26428593--26428634	22	2.0	22	90	9	70	69	0	0	30	0.89
26432147--26432183	13	2.5	15	87	12	51	43	0	2	54	1.14
26435456--26435507	15	3.2	15	73	19	50	46	0	0	53	1.00
26435469--26435515	19	2.3	20	85	7	60	48	0	0	51	1.00
26435540--26435576	16	2.3	16	86	13	58	40	0	0	59	0.97
26441521--26441560	21	1.9	21	84	0	53	27	0	7	65	1.20
26450850--26450924	20	3.8	19	83	10	89	9	32	25	33	1.88
26451982--26452061	36	2.2	36	97	2	151	22	10	25	42	1.84
26454969--26455005	20	1.9	18	89	10	56	54	5	0	40	1.24
26475017--26475053	9	4.2	9	89	3	58	43	0	0	56	0.99
26476110--26476179	31	2.3	31	82	5	79	50	14	10	25	1.74
26476128--26476205	31	2.6	31	82	8	90	52	12	11	23	1.72
26477824--26477871	21	2.2	22	96	3	89	54	0	4	41	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26478079--26478230	77	2.0	77	88	3	227	40	10	5	42	1.64
26478109--26478261	77	2.0	77	82	5	186	41	7	7	42	1.63
26478323--26478355	15	2.2	15	94	0	57	27	0	21	51	1.48
26478352--26478433	6	12.7	6	73	19	67	19	0	41	39	1.52
26478347--26478427	27	3.0	26	85	8	101	20	0	38	40	1.53
26478340--26478617	33	9.1	32	72	22	181	23	1	33	42	1.61
26478337--26478665	60	5.6	60	72	15	249	22	0	33	42	1.60
26478463--26478510	21	2.3	21	96	0	87	25	0	33	41	1.55
26478451--26478483	15	2.2	15	94	0	57	24	0	30	45	1.53
26478932--26478986	21	2.7	20	80	8	56	5	20	41	32	1.75
26479228--26479270	18	2.4	18	80	0	50	46	9	25	18	1.79
26481131--26481193	11	5.7	12	76	23	59	44	1	30	23	1.63
26481133--26481193	22	2.8	22	81	18	74	44	1	31	22	1.63
26481131--26481194	33	1.9	33	87	12	96	45	1	29	23	1.62
26481912--26481962	25	2.1	25	89	7	79	19	3	11	64	1.41
26482312--26482396	9	9.7	9	69	19	63	35	0	2	62	1.08
26482314--26482389	10	7.4	10	70	15	57	32	0	2	64	1.07
26483731--26483798	30	2.2	30	92	2	109	26	4	14	54	1.59
26483839--26483884	24	1.9	24	91	8	76	30	2	4	63	1.26
26490227--26490261	19	1.9	18	88	11	54	22	28	0	48	1.51
26491533--26491585	21	2.5	22	80	17	60	37	5	24	32	1.79
26492005--26492051	21	2.2	22	88	11	71	44	17	6	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26497999--26498050	15	3.4	15	81	5	68	32	13	13	40	1.83
26505574--26505641	31	2.2	32	86	2	93	50	10	2	36	1.52
26515487--26515521	17	2.1	17	89	10	54	37	0	11	51	1.38
26519076--26519557	242	2.0	240	98	0	937	26	14	15	42	1.86
26521523--26521574	27	1.9	27	100	0	104	26	9	19	44	1.81
26524672--26524805	62	2.2	62	97	1	252	47	8	4	39	1.55
26526576--26526913	167	2.0	167	99	0	667	30	15	19	34	1.92
26538017--26538042	12	2.2	12	100	0	52	69	0	0	30	0.89
26539637--26539796	50	3.2	50	66	10	137	26	22	21	30	1.99
26539873--26540177	43	7.0	43	78	6	283	31	27	14	26	1.95
26539862--26540151	133	2.2	131	85	4	386	30	26	14	28	1.95
26540682--26540883	108	1.9	108	84	4	273	46	10	17	25	1.80
26553839--26553877	14	2.8	14	100	0	78	35	0	5	58	1.20
26556019--26556056	18	2.1	18	95	0	67	34	5	28	31	1.80
26556056--26556304	43	5.8	43	84	3	306	26	29	18	25	1.98
26556056--26556297	85	2.8	85	85	4	301	26	29	18	25	1.98
26556056--26556304	128	1.9	128	84	3	331	26	29	18	25	1.98
26560665--26560712	12	4.1	11	79	12	51	45	2	0	52	1.12
26560673--26560738	24	2.9	22	82	10	71	45	1	1	51	1.19
26561194--26561240	7	6.7	7	85	0	58	27	51	2	19	1.58
26561195--26561249	21	2.6	21	82	2	65	27	50	1	20	1.58
26562275--26562486	41	5.2	40	86	5	275	29	30	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26562537--26562651	40	2.9	39	80	5	133	23	20	19	36	1.95
26562658--26562683	12	2.2	12	100	0	52	46	30	15	7	1.74
26563461--26563501	18	2.2	18	87	12	57	63	0	4	31	1.15
26564685--26564771	33	2.7	31	82	10	104	36	0	14	48	1.45
26564685--26564834	34	4.5	34	78	10	107	34	2	17	46	1.59
26570853--26570890	18	2.1	19	95	5	69	34	23	31	10	1.89
26576195--26576241	3	15.7	3	100	0	94	68	31	0	0	0.90
26584944--26585102	79	2.0	79	93	0	273	32	22	10	35	1.87
26598943--26599124	29	6.3	28	73	6	114	20	28	12	38	1.89
26598971--26599156	87	2.1	87	86	2	248	22	27	11	38	1.89
26598943--26599134	58	3.3	58	76	5	172	21	27	11	38	1.89
26602136--26602376	27	8.9	27	82	4	272	43	20	18	17	1.88
26602124--26602394	81	3.3	80	79	7	289	43	19	18	18	1.89
26602539--26602628	26	3.4	26	81	1	108	18	21	20	40	1.92
26602527--26602628	52	2.0	51	84	7	134	18	20	21	39	1.93
26602733--26602804	28	2.5	28	86	6	99	26	26	18	29	1.98
26604883--26604910	14	2.0	14	100	0	56	35	7	0	57	1.26
26605350--26605385	15	2.4	14	90	9	54	22	38	0	38	1.54
26605357--26605394	19	2.0	19	90	10	60	21	39	0	39	1.53
26609143--26609410	47	5.7	47	91	2	398	32	8	30	28	1.88
26609143--26609410	92	2.9	92	89	4	387	32	8	30	28	1.88
26609143--26609399	139	1.8	139	89	1	399	31	9	30	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26609529--26609607	37	2.1	37	90	0	122	24	18	31	25	1.98
26610890--26610922	16	2.0	17	88	5	50	24	15	9	51	1.72
26611751--26611869	34	3.5	34	84	0	148	14	13	28	43	1.83
26612949--26613012	17	4.2	15	74	20	53	68	4	4	21	1.27
26612947--26613007	21	2.9	20	80	9	68	68	3	6	21	1.27
26612931--26612994	18	3.6	18	70	8	51	67	1	9	21	1.28
26617199--26617257	30	2.0	30	89	0	91	47	6	15	30	1.71
26617893--26617966	22	3.3	21	74	9	67	41	20	18	18	1.90
26617958--26618059	32	3.2	31	80	4	114	40	19	18	21	1.92
26618214--26618291	24	3.2	24	77	0	84	46	20	8	24	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172