genome.fa.s22.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  121  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34537793--34538204	89	4.7	89	92	2	645	29	22	18	29	1.97
34537589--34538133	222	2.5	221	84	3	691	28	24	17	30	1.97
34543678--34543769	32	2.9	32	95	0	166	44	16	15	23	1.85
34548388--34548427	21	1.9	21	90	10	64	40	0	7	52	1.30
34552692--34552744	6	8.8	6	89	0	70	16	24	0	58	1.38
34552677--34552755	18	4.3	18	86	1	104	13	22	2	60	1.45
34552679--34552738	24	2.5	24	94	2	102	15	25	1	58	1.46
34552689--34552744	24	2.4	24	85	14	89	16	23	0	60	1.35
34559549--34559591	21	2.0	21	86	8	61	44	6	2	46	1.43
34567214--34567351	68	2.0	68	100	0	276	43	8	18	28	1.80
34571073--34571117	22	2.0	22	83	8	56	24	31	2	42	1.67
34571497--34571529	17	1.9	17	100	0	66	33	18	42	6	1.75
34571497--34571533	17	2.3	16	90	9	58	35	16	43	5	1.71
34573239--34573332	18	5.2	18	85	2	109	41	20	7	30	1.80
34573239--34573332	27	3.5	27	77	11	95	41	20	7	30	1.80
34573239--34573332	9	10.4	9	77	8	84	41	20	7	30	1.80
34573983--34574258	116	2.3	118	91	4	441	39	3	9	47	1.54
34574068--34574240	55	3.0	55	68	22	149	41	4	8	46	1.54
34577179--34577227	24	2.0	24	100	0	98	36	16	8	38	1.78
34577083--34577354	150	1.8	150	91	0	454	29	19	16	34	1.94
34577412--34577781	104	3.7	104	81	6	393	40	18	2	37	1.66
34581723--34581804	33	2.5	33	82	4	94	35	19	26	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34581785--34581844	29	2.1	28	87	3	84	45	21	20	13	1.85
34596822--34596879	19	2.8	21	68	21	59	48	12	0	39	1.40
34597349--34597393	14	3.4	14	70	17	51	60	0	4	35	1.17
34597348--34597396	25	2.0	25	100	0	98	57	0	4	38	1.18
34599084--34599125	14	3.0	14	85	0	57	33	30	9	26	1.88
34600404--34600452	4	12.2	4	86	0	62	32	2	22	42	1.65
34603459--34603545	30	2.9	31	79	6	90	35	14	16	33	1.89
34606147--34606205	30	2.0	30	93	0	100	32	20	10	37	1.86
34608855--34609039	27	6.9	27	77	9	155	54	4	2	38	1.34
34608851--34609052	40	5.1	40	82	6	189	54	4	2	38	1.34
34608860--34609069	67	3.1	67	97	0	393	54	3	2	39	1.33
34608851--34609069	27	8.2	25	80	9	152	54	4	2	38	1.34
34609051--34609129	20	3.8	20	72	11	70	48	3	6	41	1.47
34612143--34612190	22	2.2	22	84	0	69	29	22	14	33	1.94
34614765--34614845	19	4.4	19	78	9	96	40	7	16	35	1.76
34615467--34615539	23	3.3	22	75	14	62	28	1	5	64	1.24
34615484--34615545	22	2.9	22	73	20	58	32	1	4	61	1.27
34619933--34619978	24	1.9	24	95	0	83	45	2	2	50	1.26
34624963--34625023	22	2.7	24	80	12	74	37	3	8	50	1.48
34626299--34626332	17	2.0	17	88	11	52	82	8	5	2	0.93
34627247--34627284	11	3.5	11	85	0	58	52	0	0	47	1.00
34630961--34630998	13	2.9	13	77	14	51	36	26	5	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34635985--34636084	28	3.6	28	98	0	191	31	12	26	31	1.92
34636808--34637324	141	3.7	142	92	1	815	26	13	17	41	1.87
34636808--34637324	23	22.0	23	73	10	294	26	13	17	41	1.87
34636808--34637324	71	7.3	71	85	1	707	26	13	17	41	1.87
34637903--34637997	40	2.4	40	87	0	127	24	36	20	18	1.95
34640075--34640158	30	2.8	30	92	0	141	27	15	22	34	1.94
34644998--34645514	265	2.0	262	85	3	698	37	12	13	35	1.83
34648707--34648756	16	3.1	16	79	2	55	36	4	4	56	1.37
34648865--34648893	6	4.8	6	100	0	58	34	34	13	17	1.89
34650748--34650777	14	2.1	14	93	0	51	0	10	13	76	1.01
34650808--34650849	15	2.9	15	86	6	52	64	0	0	35	0.94
34654423--34654485	27	2.3	27	100	0	126	12	30	31	25	1.93
34654651--34654748	43	2.3	43	98	0	187	14	30	35	19	1.91
34657832--34657900	28	2.5	28	90	0	102	31	11	26	30	1.91
34658627--34658991	23	15.6	23	71	13	169	26	13	16	43	1.85
34658668--34659047	70	5.4	70	88	2	521	27	11	17	43	1.84
34658625--34658837	93	2.3	93	74	11	204	27	12	16	43	1.85
34659314--34659343	12	2.5	12	94	0	51	50	6	0	43	1.28
34661637--34661679	16	2.7	16	82	10	52	55	2	0	41	1.12
34664027--34664053	10	2.7	10	100	0	54	37	0	0	62	0.95
34673122--34673182	31	2.0	31	86	0	86	34	11	6	47	1.66
34676667--34676811	69	2.2	67	80	12	162	18	10	17	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34680888--34681160	150	1.8	150	93	1	476	32	21	17	28	1.96
34682855--34682915	18	3.4	17	77	8	68	26	36	8	29	1.85
34687995--34688043	19	2.5	19	81	12	64	14	8	0	77	0.98
34688055--34688090	15	2.5	15	90	4	56	36	5	0	58	1.22
34688412--34688513	30	3.4	31	83	5	122	29	22	3	44	1.71
34688777--34688825	10	5.2	10	80	11	59	69	2	28	0	1.00
34688783--34688826	16	2.8	16	83	13	56	68	0	31	0	0.90
34688786--34688821	18	2.1	17	94	5	63	69	0	30	0	0.89
34688891--34688915	3	8.3	3	100	0	50	68	0	32	0	0.90
34689026--34689131	35	3.3	30	81	15	97	69	19	8	1	1.23
34689041--34689111	16	4.5	16	77	8	58	69	19	8	2	1.28
34689073--34689111	15	2.6	14	84	11	51	69	20	10	0	1.17
34689026--34689131	31	3.3	30	80	12	104	69	19	8	1	1.23
34689074--34689134	20	3.4	19	75	20	60	68	18	13	0	1.20
34689224--34689316	8	11.0	8	76	15	80	80	0	19	0	0.71
34689237--34689308	14	5.1	15	78	8	80	81	0	18	0	0.68
34689225--34689320	36	2.6	36	83	5	111	81	0	18	0	0.70
34689235--34689320	18	4.7	18	78	8	102	81	0	18	0	0.69
34689861--34689903	22	2.0	22	86	8	63	53	16	4	25	1.62
34689899--34690061	17	9.4	17	78	9	159	30	12	10	47	1.74
34689899--34690061	35	4.7	34	79	8	168	30	12	10	47	1.74
34701840--34702260	193	2.2	191	96	1	763	30	14	20	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34702279--34702312	16	2.1	17	88	5	52	17	11	5	64	1.45
34702218--34702463	91	2.8	87	84	9	295	26	18	18	35	1.94
34702462--34702495	15	2.5	13	82	17	50	11	8	8	70	1.34
34702467--34702495	15	1.9	15	100	0	58	13	6	6	72	1.26
34702571--34702787	54	4.1	55	86	9	306	28	16	17	36	1.92
34703058--34703129	30	2.4	30	85	0	108	30	20	2	45	1.65
34703391--34703440	10	5.2	10	80	7	59	70	0	30	0	0.88
34703394--34703436	19	2.3	19	88	11	63	69	0	30	0	0.88
34703627--34703669	20	2.2	20	82	0	50	76	18	2	2	1.00
34703646--34703714	15	4.6	14	75	10	50	66	21	10	1	1.29
34703677--34703717	15	2.7	15	82	17	57	68	17	14	0	1.22
34703829--34703927	15	6.6	15	81	7	112	79	0	20	0	0.73
34703830--34703923	8	11.8	8	76	13	95	80	0	19	0	0.70
34703831--34703927	22	4.3	22	75	16	92	80	0	19	0	0.71
34703830--34703923	26	3.7	26	76	15	90	80	0	19	0	0.70
34704467--34704509	22	2.0	22	86	8	63	53	16	4	25	1.62
34704501--34704667	17	9.5	17	76	12	142	29	11	10	48	1.73
34704501--34704667	35	4.8	34	79	8	158	29	11	10	48	1.73
34704628--34704756	36	3.4	38	72	16	115	35	10	12	41	1.76
34707983--34708030	20	2.3	20	82	13	62	56	6	2	35	1.36
34727437--34727470	16	2.1	16	88	0	50	41	0	2	55	1.15
34728379--34728428	26	1.9	26	83	0	64	34	2	38	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34729930--34729962	15	2.3	15	94	5	59	36	0	0	63	0.95
34730059--34730146	38	2.4	37	83	14	103	29	5	4	60	1.40
34730061--34730141	18	4.4	18	71	17	60	29	4	3	61	1.34
34733675--34733724	24	2.1	24	88	0	73	34	20	16	30	1.94
34733760--34733962	53	3.8	53	92	0	325	35	15	10	37	1.82
34735239--34735289	23	2.2	23	89	0	75	41	19	9	29	1.84
34741965--34742018	26	2.1	25	96	3	99	38	24	14	22	1.91
34744030--34744060	9	3.4	9	90	0	53	25	12	22	38	1.90
34744100--34744130	9	3.4	9	95	0	53	48	12	9	29	1.73
34744347--34744403	30	1.9	29	85	3	78	19	35	0	45	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172