genome.fa.s22.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  19  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4872573--4873097	289	1.8	286	92	2	901	34	16	14	34	1.89
4873011--4873183	86	2.0	86	100	0	346	41	16	15	27	1.88
4872862--4873330	234	2.0	234	96	0	859	35	16	15	32	1.91
4873097--4873589	147	3.3	148	94	0	873	32	17	15	34	1.91
4872722--4873478	381	2.0	375	93	2	1293	34	16	14	33	1.90
4874049--4874090	15	2.9	15	85	3	50	35	45	0	19	1.50
4874106--4874140	15	2.4	14	86	9	52	40	37	0	22	1.55
4874339--4874393	15	3.7	15	76	11	60	34	47	0	18	1.49
4874339--4874372	8	4.6	7	86	13	50	32	50	0	17	1.47
4874388--4874436	14	3.4	14	83	5	62	34	38	0	26	1.57
4874805--4874951	29	5.0	29	86	4	179	38	21	3	37	1.70
4874806--4874953	30	5.0	30	87	5	196	37	21	3	37	1.70
4874806--4874953	59	2.5	61	85	10	200	37	21	3	37	1.70
4875141--4875187	17	2.9	16	81	12	60	76	0	23	0	0.78
4875345--4875375	12	2.6	12	89	0	53	25	58	16	0	1.38
4875402--4875460	28	2.1	28	84	6	75	81	10	8	0	0.88
4875402--4875463	16	3.8	16	81	12	58	79	11	9	0	0.95
4875578--4875699	18	7.2	17	73	19	103	80	0	19	0	0.72
4875578--4875698	11	10.8	11	72	21	92	80	0	19	0	0.72
4875578--4875700	47	2.6	46	80	12	142	80	0	19	0	0.71
4875578--4875704	40	3.6	33	76	20	125	79	0	20	0	0.73
4875884--4875909	5	5.2	5	100	0	52	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4876197--4876406	17	11.8	17	70	15	122	30	12	12	45	1.79
4876248--4876316	19	3.8	19	70	18	56	36	15	11	36	1.84
4876323--4876406	35	2.4	36	78	9	91	27	10	13	48	1.75
4886509--4886564	28	2.0	28	100	0	112	35	25	21	17	1.95
4887501--4887559	8	7.6	8	78	14	70	84	10	3	1	0.80
4887491--4887559	21	3.1	21	80	12	75	84	8	5	1	0.84
4887515--4887559	17	2.7	17	83	16	67	84	8	4	2	0.84
4888413--4888862	77	5.8	78	81	8	517	28	17	19	35	1.94
4889134--4889185	3	18.0	3	96	4	90	69	0	30	0	0.89
4889153--4889198	22	2.1	22	87	0	65	80	0	19	0	0.71
4889282--4889334	23	2.1	24	86	13	72	81	11	7	0	0.88
4889452--4889570	16	7.6	16	78	15	124	79	0	20	0	0.73
4889596--4889638	22	2.0	22	90	0	68	18	18	23	39	1.92
4889755--4889781	5	5.4	5	100	0	54	18	0	0	81	0.69
4890071--4890278	17	11.8	18	70	14	132	30	11	13	44	1.79
4890711--4891077	113	3.2	114	87	1	506	26	24	21	27	1.99
4892822--4892862	18	2.2	20	82	8	50	56	7	2	34	1.40
4895454--4895857	105	3.8	105	85	4	501	37	18	15	28	1.91
4895454--4895875	110	3.9	108	85	5	547	37	18	14	29	1.91
4900246--4900303	29	2.0	29	83	6	73	37	12	10	39	1.77
4902486--4902529	20	2.2	20	84	8	54	63	2	6	27	1.31
4908521--4908546	9	2.9	9	100	0	52	23	7	34	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4910287--4910332	8	5.0	9	78	21	51	65	8	0	26	1.21
4910287--4910367	19	4.3	19	78	6	76	59	8	0	32	1.28
4910288--4910332	10	4.8	10	78	13	51	66	6	0	26	1.16
4910377--4910427	21	2.5	20	75	15	52	60	1	5	31	1.31
4912906--4912949	14	3.1	14	87	12	72	20	0	0	79	0.73
4912995--4913127	30	4.4	29	82	5	142	33	21	3	42	1.68
4913654--4913683	13	2.3	13	100	0	60	13	26	46	13	1.80
4913742--4913778	13	3.1	13	85	14	53	72	0	27	0	0.84
4914311--4914354	17	2.5	17	82	13	54	31	15	6	45	1.73
4914420--4914471	17	3.0	17	70	13	52	28	13	13	44	1.82
4914575--4914675	17	5.6	18	75	15	93	32	13	8	44	1.75
4914528--4914614	44	2.0	45	83	2	113	28	17	11	42	1.84
4914573--4914805	37	6.5	38	73	15	151	33	14	10	42	1.80
4914853--4914931	19	4.4	17	73	13	52	30	11	12	45	1.77
4914872--4914924	19	2.7	19	77	11	63	35	15	13	35	1.86
4925833--4925902	1	70.0	1	72	0	50	85	8	4	1	0.78
4925835--4925889	6	8.8	6	82	7	56	85	10	1	1	0.75
4925834--4925890	13	4.5	13	85	12	73	85	10	1	1	0.73
4925833--4925882	15	3.2	15	86	8	64	88	10	0	2	0.61
4925833--4925882	25	2.1	24	88	7	75	88	10	0	2	0.61
4925834--4925902	13	5.4	12	81	13	68	85	8	4	1	0.78
4926770--4926903	73	2.0	64	84	11	160	26	15	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4926773--4927613	76	11.1	76	92	3	1284	27	16	19	35	1.94
4927535--4927700	90	1.8	90	89	2	262	32	15	20	31	1.93
4927626--4927778	76	2.0	76	81	7	175	28	16	18	36	1.92
4927383--4927856	243	2.0	241	78	6	501	29	15	19	34	1.93
4928136--4928265	30	4.3	30	83	5	131	33	22	4	40	1.74
4928134--4928287	60	2.6	60	77	10	154	33	22	5	38	1.77
4928853--4928894	19	2.2	20	91	8	70	78	0	21	0	0.75
4928853--4928895	10	4.4	9	82	11	50	79	0	20	0	0.74
4929213--4929242	14	2.1	14	93	0	51	80	0	20	0	0.72
4929693--4929738	17	2.6	17	83	12	58	30	15	8	45	1.76
4929829--4929884	23	2.4	24	82	8	71	42	12	8	35	1.74
4929907--4929994	44	2.0	45	81	2	106	27	15	12	44	1.83
4929952--4930200	17	13.8	18	69	15	140	31	14	10	43	1.79
4930034--4930200	74	2.3	71	80	9	185	32	13	10	43	1.78
4930063--4930201	74	1.9	73	85	8	194	33	12	10	43	1.78
4930252--4930285	17	2.0	17	88	0	50	29	5	14	50	1.67
4930257--4930322	18	3.6	17	71	15	51	34	12	15	37	1.84
4930364--4930400	20	2.0	20	84	10	51	51	2	10	35	1.51
4930372--4930418	22	2.1	21	84	11	58	51	4	12	31	1.59
4934032--4934071	14	2.9	14	84	0	53	32	7	17	42	1.77
4934040--4934106	34	1.9	35	87	3	100	32	8	11	46	1.72
4934055--4934094	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4939145--4939214	34	2.1	34	100	0	140	48	5	11	34	1.63
4943016--4943056	21	2.0	21	81	18	50	31	19	26	21	1.97
4944112--4944213	52	2.0	51	98	1	195	27	23	31	17	1.97
4946044--4946096	5	10.6	5	81	0	61	24	33	1	39	1.66
4946040--4946096	15	3.8	15	90	0	87	24	31	1	42	1.65
4949294--4949357	28	2.2	30	78	13	80	29	6	0	64	1.18
4949294--4949361	27	2.5	26	75	15	66	27	5	0	66	1.15
4949311--4949369	29	2.1	28	80	3	64	27	3	1	67	1.16
4954542--4954601	22	2.7	22	78	17	61	20	8	0	71	1.11
4954542--4954601	17	3.4	18	75	13	54	20	8	0	71	1.11
4954681--4954716	12	3.0	12	92	8	56	33	33	16	16	1.92
4955012--4955306	150	2.0	150	99	0	581	34	13	12	39	1.83
4956344--4956378	15	2.4	15	90	4	54	48	0	8	42	1.33
4956406--4956448	10	4.3	10	75	0	50	25	6	2	65	1.30
4957502--4957548	19	2.4	19	85	3	58	59	2	0	38	1.09
4957514--4957605	9	9.6	10	68	17	54	60	0	2	36	1.09
4957513--4957590	30	2.7	29	80	11	95	57	0	2	39	1.12
4957572--4957627	18	3.1	17	84	7	58	64	0	5	30	1.16
4957946--4957987	16	2.6	16	85	11	50	66	9	0	23	1.21
4957914--4957985	36	2.1	36	82	7	87	58	6	2	31	1.39
4961789--4961823	18	1.9	18	88	0	52	34	0	2	62	1.10
4962150--4962199	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4971373--4971402	14	2.1	14	93	0	51	40	13	3	43	1.60
4972798--4972834	17	2.2	17	90	4	58	78	2	2	16	0.98
4972842--4972884	12	3.5	12	84	12	52	72	0	2	25	0.97
4972853--4972890	19	2.0	19	89	0	58	73	0	0	26	0.83
4972800--4972887	30	2.9	31	75	12	78	72	1	3	22	1.06
4982734--4982777	19	2.3	20	84	7	56	27	20	11	40	1.86
4986879--4987228	86	4.1	86	93	0	556	26	23	24	26	2.00
4986933--4987153	42	5.2	42	61	20	107	26	25	23	24	2.00
4987284--4987463	46	4.0	46	67	13	129	26	19	24	30	1.98
4987176--4987470	136	2.2	134	93	2	502	26	20	23	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172