genome.fa.s22.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  122  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34744408--34744445	7	5.4	7	100	0	76	15	71	0	13	1.16
34746717--34746743	14	1.9	14	100	0	54	37	0	0	62	0.95
34748095--34748128	12	2.8	12	90	0	50	67	0	0	32	0.91
34750284--34750314	16	1.9	16	93	0	53	22	19	25	32	1.97
34757484--34757528	16	2.8	15	78	15	54	2	26	0	71	0.98
34770684--34770723	22	1.9	22	85	10	57	15	32	2	50	1.57
34773038--34773182	25	5.8	25	97	0	272	45	0	13	40	1.44
34774231--34774596	125	2.9	125	90	0	563	30	22	16	29	1.96
34774968--34775000	16	2.1	16	100	0	66	30	15	18	36	1.91
34776094--34776122	15	1.9	15	100	0	58	34	0	3	62	1.12
34778351--34778547	41	4.8	41	91	5	308	28	21	22	27	1.99
34778762--34778859	33	2.9	33	84	7	108	30	10	22	36	1.87
34786027--34786220	41	4.8	41	89	7	281	28	21	22	27	1.99
34786027--34786220	81	2.4	80	86	10	277	28	21	22	27	1.99
34786027--34786274	122	2.0	122	80	6	279	29	20	23	27	1.99
34786435--34786532	33	2.9	33	84	7	108	30	10	22	36	1.87
34790346--34790431	24	3.4	25	78	10	72	58	5	5	30	1.45
34790369--34790438	23	3.1	23	78	10	65	58	4	4	32	1.37
34790708--34790748	15	2.7	15	96	0	73	46	0	31	21	1.52
34794668--34794924	27	9.5	27	82	4	277	43	19	16	20	1.88
34794668--34794924	81	3.2	81	82	5	306	43	19	16	20	1.88
34795387--34795460	33	2.2	35	83	9	91	28	18	18	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34797571--34797611	19	2.2	19	95	0	73	39	7	9	43	1.65
34800274--34800314	21	2.0	21	90	0	64	29	21	29	19	1.98
34803180--34803205	6	4.3	6	100	0	52	15	30	0	53	1.42
34807953--34808032	41	2.0	41	84	0	106	18	23	38	18	1.93
34812752--34812795	3	14.7	3	100	0	88	34	0	0	65	0.93
34812797--34812835	19	2.2	18	86	9	53	30	5	2	61	1.31
34814007--34814237	27	8.6	27	80	3	241	43	20	16	19	1.88
34814755--34815076	109	3.0	108	85	2	434	35	16	16	31	1.92
34816384--34816424	19	2.2	18	87	12	57	82	2	9	4	0.89
34817093--34817521	132	3.2	132	89	0	669	27	23	18	30	1.98
34817527--34817761	46	5.1	46	93	2	409	31	26	15	26	1.96
34819022--34819052	6	5.0	6	92	7	53	0	19	0	80	0.71
34819022--34819056	12	2.8	13	91	8	56	0	20	0	80	0.72
34819140--34819172	14	2.3	15	89	5	50	24	33	15	27	1.95
34822771--34822813	21	2.0	22	86	4	61	27	2	11	58	1.46
34823215--34823286	14	5.5	13	72	21	62	45	9	1	43	1.45
34823241--34823289	13	3.8	12	84	10	53	46	8	0	44	1.33
34824961--34825004	17	2.4	17	85	11	52	29	0	2	68	1.02
34824978--34825012	17	2.1	17	94	0	61	20	0	8	71	1.11
34831944--34832093	42	3.5	42	78	13	137	32	28	16	22	1.96
34832890--34832915	7	3.7	7	100	0	52	26	11	0	61	1.30
34835268--34835298	8	3.9	8	91	0	53	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34835265--34835299	16	2.2	16	100	0	70	54	0	0	45	0.99
34835265--34835308	16	3.0	15	87	9	56	56	2	0	40	1.11
34841206--34841239	11	3.1	11	86	0	50	55	2	23	17	1.55
34843447--34843591	41	3.5	41	93	0	245	28	20	27	23	1.99
34844913--34844953	15	2.7	16	85	11	59	24	7	2	65	1.30
34845085--34845109	12	2.1	12	100	0	50	24	8	0	68	1.16
34849143--34849193	3	17.0	3	83	0	66	31	1	3	62	1.24
34849366--34849431	25	2.6	25	86	13	91	46	6	3	43	1.43
34849871--34850008	69	2.0	69	94	0	240	29	16	18	35	1.93
34855690--34855817	44	2.9	45	78	9	145	28	27	21	22	1.99
34856177--34856614	92	4.9	91	75	10	350	32	17	19	30	1.95
34856277--34856613	181	1.9	181	88	2	516	33	17	20	28	1.95
34856721--34856953	114	2.0	115	90	0	369	34	20	24	21	1.97
34857898--34857963	25	2.6	26	81	18	86	45	6	3	45	1.43
34857906--34857966	23	2.7	21	79	20	61	44	6	3	45	1.46
34859761--34859801	12	3.3	13	76	13	50	78	9	4	7	1.10
34864881--34864921	21	1.9	22	85	5	57	60	4	2	31	1.30
34866621--34866650	13	2.3	13	94	0	51	33	16	0	50	1.46
34868656--34868685	14	2.1	14	93	0	51	0	43	6	50	1.28
34870253--34870343	26	3.7	25	74	17	68	63	4	5	26	1.35
34872232--34872855	132	4.7	132	89	2	921	25	25	19	29	1.98
34872467--34872811	44	7.8	44	68	11	177	24	26	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34873357--34873578	108	2.1	108	86	3	304	47	8	16	27	1.75
34873841--34873878	7	5.7	7	87	6	53	0	13	0	86	0.56
34876090--34876134	3	15.0	3	95	0	81	33	2	0	64	1.06
34876660--34876952	111	2.7	110	90	2	457	30	17	19	33	1.94
34877693--34877728	11	3.2	11	88	7	54	22	0	5	72	1.05
34878315--34878353	16	2.4	17	83	12	55	35	5	2	56	1.35
34883096--34883144	3	15.3	3	79	12	53	65	0	6	28	1.16
34883048--34883139	26	3.7	25	74	17	70	64	4	5	26	1.34
34891380--34891422	21	2.0	22	90	4	70	58	9	2	30	1.42
34893760--34894552	395	2.0	395	97	0	1516	33	15	18	31	1.93
34897947--34897975	3	9.7	3	100	0	58	68	0	0	31	0.89
34898997--34899034	18	2.1	18	95	0	67	39	28	13	18	1.88
34901768--34901807	15	2.6	15	88	4	53	17	15	0	67	1.23
34912053--34912090	20	2.0	20	94	5	69	42	2	0	55	1.14
34912653--34912688	19	1.9	19	88	5	56	47	0	2	50	1.15
34914185--34914246	28	2.2	28	88	5	90	30	12	12	43	1.81
34914207--34914246	15	2.9	13	79	13	53	27	12	12	47	1.77
34915194--34915240	21	2.2	21	88	0	67	8	10	2	78	1.04
34915194--34915238	10	4.4	10	83	5	63	8	8	2	80	1.00
34915206--34915248	21	2.0	21	86	0	59	9	11	0	79	0.95
34916044--34916087	21	2.1	21	95	0	79	47	13	9	29	1.74
34916270--34916315	20	2.4	20	85	7	60	71	8	4	15	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34919454--34919495	19	2.2	20	86	4	59	4	11	2	80	0.95
34920483--34920520	18	2.1	18	100	0	76	18	0	15	65	1.27
34923263--34923436	30	5.8	30	92	1	287	25	48	3	22	1.66
34923263--34923436	59	2.9	59	96	1	312	25	48	3	22	1.66
34923263--34923436	89	1.9	90	91	1	287	25	48	3	22	1.66
34923613--34923646	17	1.9	17	88	5	50	20	5	29	44	1.75
34923930--34924143	25	8.7	25	70	16	135	34	6	4	55	1.45
34924117--34924172	19	2.8	20	75	8	60	32	7	5	55	1.50
34924292--34924325	15	2.3	14	90	10	50	29	0	5	64	1.17
34924292--34924325	8	4.5	8	96	3	54	29	0	5	64	1.17
34924292--34924332	16	2.6	15	88	7	55	29	0	4	65	1.13
34925900--34925935	12	3.0	12	95	0	63	27	25	5	41	1.77
34934354--34934545	73	2.6	70	82	6	222	26	15	23	34	1.94
34934570--34934898	84	3.7	87	82	9	346	27	18	20	34	1.96
34934796--34934828	14	2.4	14	94	0	57	12	18	6	63	1.48
34934833--34935132	77	4.0	76	80	9	348	29	16	21	32	1.95
34934833--34935098	75	3.6	73	81	12	344	30	15	22	31	1.95
34935250--34935381	69	1.9	69	89	7	205	36	16	17	29	1.92
34935397--34935612	70	3.1	71	77	17	204	28	16	20	34	1.94
34935764--34935791	14	2.0	14	100	0	56	14	21	7	57	1.61
34935942--34936184	102	2.4	102	85	6	323	25	16	17	39	1.90
34936178--34936427	75	3.3	74	82	6	279	25	18	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34936418--34936454	14	2.8	13	84	8	56	10	13	8	67	1.41
34937219--34937363	30	4.8	30	94	0	254	25	49	3	21	1.65
34937246--34937298	18	3.3	18	65	29	55	24	49	3	22	1.66
34937876--34938060	50	3.7	49	72	18	125	33	6	4	55	1.47
34937850--34937979	24	5.5	24	69	19	87	35	4	3	56	1.35
34937935--34938010	30	2.5	31	81	8	77	32	5	3	57	1.39
34937999--34938057	25	2.5	24	78	10	68	33	8	6	50	1.59
34938015--34938063	25	2.0	25	91	0	80	34	8	6	51	1.57
34938042--34938097	19	2.9	19	74	12	60	32	7	5	55	1.50
34938210--34938257	16	3.1	15	90	6	69	31	2	2	64	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172