genome.fa.s22.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  113  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32450598--32450690	45	2.1	44	90	6	143	36	24	4	34	1.75
32450672--32450711	16	2.5	16	91	0	62	30	25	7	37	1.83
32451909--32451935	4	6.8	4	100	0	54	0	0	22	77	0.76
32456298--32456599	162	1.9	159	86	3	426	23	9	18	47	1.78
32458828--32458868	20	2.1	20	86	4	57	70	2	2	24	1.11
32460061--32460103	22	2.0	22	95	0	77	25	9	6	58	1.54
32463192--32463271	27	3.0	27	84	0	115	37	40	8	13	1.76
32463276--32463370	24	4.0	24	88	0	91	27	45	13	13	1.81
32463312--32463382	24	3.0	24	97	0	133	35	42	12	9	1.76
32466175--32466217	16	2.7	16	77	0	50	20	13	20	44	1.86
32469154--32469216	22	3.0	21	79	9	67	46	0	0	53	1.00
32469171--32469223	18	2.9	17	78	15	61	41	0	0	58	0.98
32469205--32469246	13	2.9	14	80	13	50	54	0	0	45	0.99
32469209--32469245	16	2.3	16	86	13	58	59	0	0	40	0.97
32469783--32469813	14	2.2	14	94	0	53	35	19	0	45	1.51
32504222--32504267	22	2.1	22	100	0	92	28	8	28	34	1.87
32517689--32517737	24	2.1	23	82	14	57	51	2	8	38	1.43
32517771--32517823	3	17.7	3	80	7	63	62	1	5	30	1.29
32531954--32532010	22	2.6	21	81	8	60	43	19	22	14	1.86
32532989--32533023	5	7.0	5	100	0	70	60	0	0	40	0.97
32538943--32538984	15	2.8	15	78	10	50	33	2	0	64	1.07
32541999--32542170	41	4.2	41	83	3	177	20	29	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32551883--32552060	96	1.8	98	86	9	265	40	3	6	49	1.46
32569860--32570114	129	2.0	129	91	0	411	38	12	7	41	1.71
32571520--32571568	12	4.3	12	72	15	50	38	2	0	59	1.09
32571712--32571789	38	2.1	38	100	0	156	29	25	2	42	1.68
32580691--32580719	11	2.5	12	94	5	51	68	3	0	27	1.05
32581696--32581731	15	2.4	15	95	0	63	52	0	36	11	1.37
32586157--32586187	8	3.9	8	95	0	53	32	0	0	67	0.91
32587710--32587752	18	2.4	19	81	18	56	37	4	2	55	1.33
32588013--32588046	12	2.9	12	86	4	52	32	0	0	67	0.91
32588171--32588233	30	2.1	30	93	0	108	55	12	4	26	1.57
32589950--32590146	98	2.0	98	95	0	358	27	10	24	36	1.89
32592634--32592749	45	2.6	45	81	13	148	28	22	25	23	1.99
32594711--32594907	98	2.0	98	94	0	349	28	10	24	36	1.89
32597286--32597334	21	2.3	21	89	6	73	30	36	12	20	1.89
32597363--32597420	25	2.2	27	84	9	75	68	0	8	22	1.16
32597378--32597434	19	3.3	19	67	23	61	68	0	10	21	1.19
32597366--32597439	33	2.2	33	95	0	130	66	0	10	22	1.23
32601353--32601410	28	2.1	27	87	6	82	48	5	5	41	1.48
32601193--32601659	231	2.0	235	98	1	906	38	13	9	38	1.77
32601584--32601641	28	2.1	27	87	6	82	48	5	5	41	1.48
32603361--32603390	15	2.0	15	93	0	51	43	6	0	50	1.28
32603567--32604358	215	3.7	215	75	14	664	39	9	6	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32603658--32604352	215	3.1	214	75	14	687	39	9	6	44	1.63
32603970--32604117	7	20.1	7	70	16	77	43	4	3	48	1.40
32604068--32604118	17	3.2	17	81	8	63	41	3	0	54	1.19
32604065--32604116	24	2.1	24	89	7	77	42	5	0	51	1.25
32603468--32604358	448	2.0	440	82	9	1068	39	10	6	43	1.65
32604105--32604549	242	1.9	241	84	5	613	37	12	6	42	1.70
32604541--32604613	30	2.4	31	82	11	80	38	1	9	50	1.44
32612008--32612074	28	2.4	28	79	0	71	20	11	11	55	1.68
32612032--32612195	28	5.9	28	75	3	118	23	14	7	54	1.66
32612067--32612197	27	4.7	27	73	8	111	25	16	6	51	1.68
32612061--32612202	55	2.6	55	83	5	162	23	16	6	53	1.65
32612061--32612209	56	2.7	54	81	9	158	24	15	6	53	1.66
32631225--32631265	21	2.0	21	85	9	57	34	7	24	34	1.83
32631553--32631583	15	2.1	15	93	0	53	54	3	0	41	1.16
32631565--32631603	12	3.3	12	82	7	53	56	2	2	38	1.27
32637199--32637375	30	5.9	30	80	10	195	33	20	3	41	1.71
32637700--32637733	11	3.2	10	88	12	50	85	0	14	0	0.60
32637670--32637733	21	3.0	21	77	11	76	75	4	18	1	1.06
32637700--32637734	10	3.6	10	92	3	54	82	0	17	0	0.66
32643574--32643607	5	6.6	5	90	6	50	32	2	0	64	1.08
32643577--32643607	16	1.9	16	93	0	53	35	3	0	61	1.12
32643573--32643621	10	4.6	11	78	14	50	36	2	0	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32643731--32643821	21	4.7	20	73	17	77	37	13	9	39	1.78
32643990--32644121	18	7.5	17	73	18	76	31	14	7	46	1.72
32643990--32644122	17	7.6	18	74	14	91	31	14	7	46	1.72
32644015--32644121	35	3.1	34	79	10	119	30	14	8	46	1.73
32645803--32645841	4	10.0	4	88	5	62	23	25	2	48	1.63
32649117--32649205	44	2.0	44	95	0	160	51	8	6	32	1.59
32649790--32649839	9	5.3	9	83	13	57	86	4	10	0	0.71
32649776--32649829	1	54.0	1	77	0	54	88	3	3	3	0.68
32650681--32650838	77	2.1	78	89	2	239	26	18	20	34	1.95
32651017--32651111	29	3.2	29	85	12	124	35	20	3	41	1.68
32651459--32651497	16	2.4	16	91	4	60	84	2	12	0	0.72
32651461--32651505	24	1.9	23	86	4	63	82	2	15	0	0.77
32651602--32651679	11	6.9	11	72	16	70	70	0	29	0	0.87
32651606--32651684	18	4.2	18	75	10	77	72	0	27	0	0.85
32651606--32651684	25	3.1	25	81	1	95	72	0	27	0	0.85
32651607--32651683	7	10.9	7	77	13	68	71	0	28	0	0.86
32651757--32651799	20	2.1	21	83	12	54	58	20	13	6	1.59
32652137--32652170	5	6.6	5	93	6	59	35	0	0	64	0.94
32652136--32652173	16	2.4	16	100	0	76	36	0	0	63	0.95
32652288--32652388	19	5.3	19	67	19	66	39	11	9	38	1.75
32652287--32652388	20	5.2	20	70	18	81	40	11	9	38	1.75
32652572--32652750	18	10.2	18	71	17	101	31	14	8	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32652618--32652736	17	7.0	16	69	21	73	30	15	10	43	1.80
32652573--32652752	70	2.6	71	74	15	178	32	14	8	44	1.75
32656409--32656498	22	4.2	22	88	4	130	45	31	2	21	1.64
32656409--32656495	43	2.0	42	88	2	129	45	29	2	21	1.64
32656534--32656559	12	2.2	12	100	0	52	38	0	0	61	0.96
32656582--32656699	21	5.5	21	88	4	182	44	31	0	22	1.59
32656582--32656700	43	2.8	42	89	3	184	44	31	0	23	1.59
32656720--32656751	7	4.9	7	85	14	50	46	0	0	53	1.00
32657409--32657450	22	1.9	22	90	0	66	50	38	0	11	1.40
32657485--32657563	40	2.0	40	82	0	95	20	26	29	24	1.99
32663574--32663795	47	4.7	47	80	0	228	33	15	23	27	1.95
32663872--32663966	34	2.8	34	80	6	86	41	16	12	29	1.86
32663910--32663984	34	2.2	34	85	4	98	45	16	9	29	1.78
32666403--32666458	27	2.1	27	89	0	85	21	32	25	21	1.98
32670406--32670594	93	2.0	93	96	0	351	21	6	21	50	1.72
32682675--32682721	11	4.3	11	84	7	60	23	27	0	48	1.51
32682675--32682717	10	4.0	10	82	11	50	23	30	0	46	1.52
32684984--32685201	49	4.5	49	94	0	357	42	3	8	46	1.50
32685026--32685109	29	3.2	29	62	28	78	42	2	9	45	1.49
32684984--32685235	98	2.6	98	85	2	256	42	3	7	45	1.50
32687728--32688135	124	3.3	124	90	2	617	29	20	17	31	1.96
32688323--32688364	21	2.0	21	85	0	57	50	38	0	11	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32692518--32692558	21	2.0	21	90	0	64	39	12	9	39	1.76
32694853--32694953	40	2.5	39	77	6	114	23	24	28	22	1.99
32694963--32694997	16	2.2	16	89	0	52	14	2	28	54	1.54
32695026--32695252	96	2.5	89	79	13	253	38	2	19	38	1.66
32695068--32695248	96	1.9	96	88	4	276	38	2	18	40	1.65
32695280--32695574	125	2.4	124	87	2	428	34	18	18	27	1.95
32695824--32695922	46	2.2	46	79	3	110	49	6	4	40	1.46
32696311--32696352	18	2.3	18	87	0	57	45	7	28	19	1.76
32708558--32708594	18	2.2	18	86	13	53	18	18	0	62	1.34
32714127--32714155	12	2.4	12	100	0	58	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172