genome.fa.s22.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  66  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18294854--18294947	41	2.3	41	98	0	179	24	27	20	27	1.99
18306526--18306591	31	2.1	31	100	0	132	56	28	6	9	1.54
18313909--18313952	15	2.9	16	86	13	74	34	0	0	65	0.93
18315693--18315749	28	2.0	28	96	0	105	33	10	19	36	1.86
18319220--18319780	138	4.1	138	92	0	908	45	6	8	39	1.61
18319756--18319903	75	2.0	75	94	2	262	30	14	10	45	1.77
18320993--18321085	31	3.0	31	83	7	127	20	23	17	38	1.93
18323278--18323324	20	2.3	20	85	0	67	29	36	12	21	1.91
18325901--18326006	48	2.2	47	85	9	135	59	1	24	14	1.45
18327675--18327721	20	2.3	20	85	0	67	29	36	12	21	1.91
18330710--18330742	17	1.9	18	88	11	52	42	12	0	45	1.41
18334754--18334818	32	2.0	32	96	0	121	36	15	3	44	1.62
18336741--18336783	19	2.3	19	88	8	61	32	9	0	58	1.30
18338546--18338643	51	1.9	51	85	6	135	27	19	25	27	1.99
18338599--18338739	40	3.5	39	79	3	147	29	19	21	29	1.98
18338778--18338885	40	2.7	40	89	0	171	29	21	22	26	1.99
18339179--18339229	7	7.4	7	80	4	50	21	0	29	49	1.50
18339179--18339231	14	3.9	14	85	5	72	20	0	32	47	1.51
18339283--18339335	21	2.5	20	77	14	54	20	0	39	39	1.53
18339740--18339788	19	2.5	19	96	3	89	73	6	4	16	1.19
18342142--18342168	14	1.9	14	100	0	54	37	7	7	48	1.59
18343771--18343805	11	3.2	11	100	0	70	37	8	8	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18344043--18344267	43	5.3	43	79	6	226	27	15	23	33	1.95
18344043--18344267	85	2.6	85	81	7	233	27	15	23	33	1.95
18357520--18357782	40	6.6	40	87	3	316	26	28	20	24	1.99
18369960--18370152	41	4.7	41	79	10	216	35	15	26	21	1.94
18369960--18370152	82	2.4	81	86	6	264	35	15	26	21	1.94
18375104--18375261	41	3.9	41	78	3	165	32	13	31	22	1.92
18375104--18375255	82	1.9	82	84	0	205	32	13	31	23	1.92
18382540--18382595	26	2.2	26	96	0	103	32	16	10	41	1.82
18383402--18383442	21	1.9	22	85	5	57	58	0	2	39	1.11
18392225--18392260	18	1.9	19	94	5	65	44	0	19	36	1.51
18398223--18398264	16	2.5	17	88	3	59	45	0	19	35	1.50
18411015--18411058	23	1.9	23	100	0	88	45	27	6	20	1.76
18413819--18413883	26	2.5	26	80	2	69	26	13	27	32	1.94
18414855--18414921	33	2.0	33	94	0	116	40	2	29	26	1.71
18428742--18428799	20	2.9	21	73	14	59	63	3	13	18	1.43
18436024--18436075	24	2.0	26	82	10	63	5	13	11	69	1.35
18444153--18444500	102	3.4	102	80	4	373	31	14	24	29	1.95
18444186--18444468	51	5.6	50	80	4	282	29	15	25	29	1.96
18448599--18448638	19	2.1	19	95	0	71	52	0	0	47	1.00
18449858--18449940	25	3.3	25	77	3	87	30	20	21	27	1.98
18456602--18456943	50	6.9	50	82	1	321	27	23	28	20	1.99
18460805--18460830	12	2.2	12	100	0	52	26	15	23	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18460816--18460846	16	1.9	16	100	0	62	29	12	19	38	1.89
18461781--18462022	50	4.9	49	81	3	254	29	22	26	21	1.99
18466424--18466478	27	2.0	27	96	0	101	34	16	7	41	1.76
18467856--18467954	46	2.2	43	82	12	119	23	19	25	32	1.97
18470635--18470848	71	3.0	71	83	3	279	30	23	21	24	1.99
18481560--18481757	51	3.9	51	77	2	195	29	27	18	24	1.98
18481566--18481751	101	1.8	99	86	5	257	30	26	18	24	1.98
18489580--18489622	22	2.0	21	81	4	50	25	2	9	62	1.37
18498774--18498917	50	2.9	50	84	0	198	21	29	23	25	1.99
18503304--18503492	50	3.7	50	80	5	191	25	21	29	23	1.99
18509631--18509676	22	2.1	22	91	0	74	45	17	6	30	1.73
18521001--18521121	29	4.2	29	78	8	147	26	25	10	37	1.89
18524505--18524604	51	2.0	48	88	5	146	31	9	15	45	1.77
18525697--18525787	17	5.5	17	69	19	50	52	1	1	45	1.15
18525722--18525787	9	6.4	11	74	20	54	54	1	0	43	1.09
18526774--18526819	23	2.0	23	100	0	92	30	13	8	47	1.72
18527716--18527799	41	2.0	41	88	4	125	35	14	3	46	1.62
18528438--18528635	100	2.0	101	93	3	346	38	22	13	25	1.90
18533855--18533953	35	2.8	35	93	0	162	16	18	27	38	1.91
18537572--18537637	33	2.0	34	84	3	89	30	22	24	22	1.99
18537611--18537734	28	4.5	28	85	2	178	30	20	24	24	1.99
18538558--18538758	40	5.0	40	86	0	267	13	31	17	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18538558--18538743	20	9.3	20	68	4	115	13	30	18	37	1.89
18538614--18538758	20	7.2	20	70	9	107	11	33	18	35	1.87
18546594--18546631	11	3.5	11	88	0	58	26	42	2	28	1.69
18558813--18558868	27	2.1	27	86	0	76	35	21	25	17	1.95
18563632--18563751	56	2.1	56	96	0	222	45	10	23	21	1.82
18564878--18565142	40	6.7	40	86	6	333	25	21	27	26	1.99
18564931--18565175	80	3.1	79	86	5	327	26	20	27	26	1.99
18564931--18565175	120	2.1	118	84	6	316	26	20	27	26	1.99
18571804--18571857	21	2.6	21	81	0	72	35	9	33	22	1.86
18572162--18572195	17	2.1	15	89	10	50	64	0	35	0	0.94
18575738--18575775	10	3.6	10	86	13	58	36	0	2	60	1.11
18587177--18587242	13	5.1	13	86	0	87	27	7	30	34	1.85
18588299--18588337	13	2.9	13	88	3	51	84	2	10	2	0.81
18591308--18591546	29	8.2	29	86	0	307	24	25	12	36	1.91
18606205--18606239	17	2.1	17	94	5	63	40	14	0	45	1.45
18616403--18616435	18	1.9	17	88	11	50	24	21	6	48	1.72
18617346--18617371	3	8.7	3	100	0	52	0	65	0	34	0.93
18619305--18619347	17	2.6	17	88	3	61	20	6	4	67	1.33
18619689--18619787	23	4.3	23	82	8	121	29	25	20	25	1.99
18619689--18619787	46	2.2	46	87	7	139	29	25	20	25	1.99
18620627--18620679	23	2.3	23	86	0	70	30	0	33	35	1.58
18624957--18625000	19	2.2	20	84	11	56	9	18	0	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18624969--18625019	23	2.5	20	84	12	59	3	19	1	74	1.07
18624969--18625019	24	2.2	23	82	10	59	3	19	1	74	1.07
18626740--18626769	14	2.1	14	100	0	60	60	33	0	6	1.23
18627106--18627144	16	2.6	15	88	8	53	23	7	2	66	1.30
18627488--18627562	23	3.3	23	85	7	107	33	24	18	24	1.97
18627666--18627721	23	2.4	23	81	0	67	30	1	30	37	1.68
18627680--18627733	23	2.3	23	84	6	74	31	0	31	37	1.58
18638082--18638213	50	2.6	50	76	4	140	27	28	17	26	1.98
18651375--18651564	50	3.7	50	78	7	141	25	27	20	26	1.99
18666476--18666515	21	1.9	21	89	0	62	50	17	7	25	1.72
18678770--18678794	13	1.9	13	100	0	50	0	20	0	80	0.72
18679207--18679246	18	2.2	18	95	0	71	22	7	0	70	1.12
18679667--18679735	24	2.9	24	78	6	86	33	7	8	50	1.61
18683319--18683710	44	8.9	44	88	0	505	32	18	22	26	1.97
18683381--18683760	132	2.9	132	82	1	341	33	17	23	25	1.96
18683896--18684743	44	19.3	44	63	7	232	27	20	24	27	1.99
18683813--18684768	88	10.9	88	88	0	1383	28	19	24	27	1.99
18684773--18684975	44	4.7	45	69	12	120	33	21	19	26	1.97
18684765--18685114	129	2.7	129	87	2	463	32	22	20	24	1.98
18684867--18685060	44	4.5	43	75	7	151	32	22	20	24	1.97
18685921--18685945	13	1.9	13	100	0	50	0	20	0	80	0.72
18686800--18686868	24	2.9	24	82	6	86	33	4	10	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18693322--18694437	374	3.0	374	90	1	1709	33	23	8	34	1.86
18696797--18696831	15	2.2	16	90	5	54	65	0	25	8	1.21
18696796--18696846	16	3.1	17	75	16	52	68	0	23	7	1.15
18697285--18697330	16	2.9	16	78	18	51	50	2	17	30	1.58
18698430--18698454	6	4.2	6	100	0	50	68	0	32	0	0.90
18699171--18699232	20	3.0	20	85	2	79	46	3	27	22	1.67
18705555--18705730	94	1.9	94	86	3	255	36	15	13	34	1.87
18709937--18710005	16	4.1	16	73	19	52	46	10	5	37	1.62
18709938--18709984	21	2.2	21	100	0	94	40	10	4	44	1.59
18717279--18717568	44	6.7	44	69	12	150	30	24	15	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172