genome.fa.s22.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  105  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30280537--30280582	25	1.9	24	82	8	58	63	8	2	26	1.35
30291869--30291961	9	10.8	9	75	14	54	33	3	2	61	1.24
30291903--30291961	3	20.0	3	89	10	95	33	0	0	66	0.92
30292102--30292127	5	5.2	5	100	0	52	38	19	19	23	1.93
30292635--30292686	16	3.0	16	76	23	52	48	0	26	25	1.52
30295397--30295449	26	2.0	26	100	0	106	50	3	7	37	1.49
30295392--30295450	26	2.2	27	90	9	102	54	3	8	33	1.48
30295403--30295458	26	2.2	26	87	3	78	53	1	5	39	1.34
30295548--30295774	120	1.9	120	87	1	330	44	7	1	47	1.40
30303320--30303887	46	12.4	46	73	3	385	33	5	22	38	1.78
30303268--30303570	138	2.2	138	86	1	419	33	6	21	38	1.79
30303523--30303887	137	2.7	137	83	2	473	33	5	22	38	1.77
30303323--30303866	23	23.7	23	67	10	229	34	5	21	38	1.76
30308669--30308698	11	2.7	11	89	0	51	66	0	0	33	0.92
30319106--30319189	41	2.0	41	100	0	168	41	9	9	39	1.70
30319865--30319895	3	10.3	3	100	0	62	64	0	0	35	0.94
30321601--30321644	15	3.0	15	84	12	56	0	31	0	68	0.90
30340992--30341437	232	1.9	232	85	5	616	40	21	13	24	1.89
30343291--30343326	18	2.1	18	94	5	65	44	16	0	38	1.48
30343968--30343994	14	1.9	14	100	0	54	44	0	22	33	1.53
30346982--30347007	8	3.2	8	100	0	52	76	11	11	0	1.01
30347964--30348017	24	2.2	24	86	0	72	53	5	3	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30351986--30352037	24	2.2	24	85	0	68	30	1	7	59	1.36
30353514--30353542	13	2.1	14	93	6	51	68	0	0	31	0.89
30355537--30355617	2	40.5	2	100	0	162	49	0	50	0	1.00
30357601--30357643	21	2.0	22	86	13	63	11	6	11	69	1.35
30361739--30361783	20	2.1	22	84	8	58	17	24	22	35	1.95
30363768--30363825	2	29.0	2	96	0	107	51	0	48	0	1.00
30365087--30365223	65	2.2	63	85	7	188	50	4	4	40	1.42
30365142--30365229	17	5.2	17	68	20	58	53	2	2	42	1.26
30365106--30365245	68	2.1	65	80	9	149	52	2	4	40	1.36
30367892--30368000	46	2.4	46	85	3	139	35	24	8	31	1.85
30367919--30368606	23	29.8	23	67	13	272	39	23	5	31	1.78
30367911--30368558	230	2.8	231	88	2	910	39	23	6	31	1.79
30368332--30368653	23	13.9	23	68	13	101	38	22	7	31	1.82
30368106--30368603	46	10.8	47	75	8	343	38	23	5	32	1.79
30369147--30369180	15	2.3	15	94	0	59	50	20	2	26	1.63
30375038--30375069	16	2.0	16	100	0	64	50	12	18	18	1.78
30379404--30379679	50	5.4	50	87	3	329	23	29	21	25	1.99
30401533--30401607	29	2.6	29	76	14	82	50	6	12	30	1.65
30404186--30404244	14	4.2	14	75	0	55	32	18	16	32	1.94
30405305--30405436	67	2.0	67	93	0	228	27	32	18	21	1.97
30414145--30414203	29	2.0	29	93	0	100	37	6	18	37	1.78
30415081--30415135	27	2.0	27	96	0	101	43	5	10	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30415298--30415338	18	2.3	18	95	0	73	14	9	17	58	1.62
30416748--30416781	11	3.1	11	87	12	52	64	0	0	35	0.94
30423238--30423344	42	2.5	42	84	4	126	25	18	25	30	1.98
30423197--30423355	43	3.7	43	76	12	157	24	17	27	30	1.97
30425080--30425116	15	2.5	15	95	0	65	35	5	5	54	1.47
30427723--30427764	22	2.1	19	86	13	57	45	0	0	54	0.99
30427723--30427761	16	2.5	15	83	8	51	46	0	0	53	1.00
30428479--30428534	25	2.2	26	78	9	71	37	1	1	58	1.19
30431357--30431397	21	2.0	21	85	9	57	41	2	0	56	1.13
30435095--30435227	56	2.4	56	92	5	216	39	18	12	30	1.87
30435092--30435227	28	4.9	28	67	20	88	39	17	12	30	1.87
30445585--30445631	24	2.0	24	86	0	67	51	8	4	36	1.52
30450494--30450529	10	3.6	10	96	0	63	58	0	2	38	1.13
30457729--30457760	14	2.3	14	94	0	55	21	59	3	15	1.50
30460990--30461014	12	2.1	12	100	0	50	32	8	8	52	1.60
30463823--30463849	14	1.9	14	100	0	54	29	40	14	14	1.86
30467144--30467522	142	2.7	142	79	2	413	24	16	24	34	1.95
30467147--30467514	71	5.2	71	78	3	357	25	16	23	35	1.95
30476346--30476415	27	2.8	24	74	16	70	18	12	32	35	1.89
30477202--30477291	3	30.0	3	93	0	153	3	33	0	63	1.11
30477579--30477831	43	5.9	43	90	1	391	29	33	17	19	1.95
30483963--30483995	14	2.3	15	94	5	59	36	33	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30484402--30484512	41	2.7	41	90	2	161	31	26	20	21	1.98
30487200--30487258	27	2.2	27	87	0	82	42	16	28	11	1.84
30490185--30490259	39	1.9	39	97	0	141	53	8	6	32	1.56
30491190--30491845	323	2.0	323	87	0	943	34	26	12	27	1.92
30501462--30501647	93	2.0	93	97	0	354	23	21	12	41	1.88
30513508--30513554	14	3.4	14	82	5	51	59	8	6	25	1.50
30514985--30515025	19	2.2	19	86	8	57	63	9	0	26	1.25
30515014--30515065	20	2.6	20	81	6	61	63	1	0	34	1.06
30520166--30520257	30	3.0	30	87	3	121	28	20	6	44	1.76
30520176--30520222	15	3.1	15	70	11	51	27	21	8	42	1.81
30520200--30520252	15	3.5	15	75	10	54	30	16	7	45	1.75
30530170--30530213	19	2.1	22	88	12	67	38	9	18	34	1.82
30536849--30536906	24	2.4	24	97	0	107	34	12	24	29	1.91
30537709--30538159	170	2.6	171	87	2	622	31	19	19	29	1.96
30537883--30538117	126	1.9	126	80	3	276	31	20	18	28	1.97
30537709--30538169	44	10.7	43	70	10	230	32	19	19	29	1.96
30538185--30538405	89	2.5	89	86	0	289	26	22	24	25	2.00
30538342--30538463	58	2.1	58	81	0	145	27	22	25	24	2.00
30539084--30539141	19	2.7	22	79	10	59	36	6	17	39	1.76
30543357--30543517	47	3.3	47	79	10	157	26	22	31	20	1.98
30543357--30543491	47	2.8	48	81	9	159	25	22	33	19	1.97
30546325--30546367	20	2.2	19	87	4	59	23	0	2	74	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30551566--30551647	42	2.0	42	85	4	112	30	24	14	30	1.95
30557962--30557986	11	2.3	11	100	0	50	36	0	0	64	0.94
30560622--30560663	22	1.9	22	100	0	84	40	0	4	54	1.21
30560633--30560668	18	2.1	17	94	5	63	38	0	2	58	1.13
30561864--30561928	21	3.0	22	75	8	80	18	20	24	36	1.94
30562158--30562235	23	3.4	23	89	0	120	21	19	20	38	1.94
30562220--30562270	21	2.3	22	86	10	77	13	27	27	31	1.94
30571371--30571808	224	2.0	225	80	5	512	35	15	11	37	1.84
30573575--30573600	13	2.0	13	100	0	52	38	7	0	53	1.30
30573871--30573903	5	6.6	5	100	0	66	42	0	0	57	0.98
30574526--30574565	20	2.0	20	90	5	62	42	2	5	50	1.37
30582116--30582154	15	2.4	16	87	8	53	43	5	25	25	1.75
30586570--30586692	43	2.9	43	92	2	194	24	17	26	31	1.97
30587397--30587443	22	2.2	22	88	3	69	8	17	6	68	1.37
30588034--30588100	3	22.3	3	100	0	134	32	0	0	67	0.91
30591580--30591617	18	2.1	18	85	9	51	0	26	0	73	0.83
30593600--30593652	27	2.0	27	85	7	72	62	0	1	35	1.06
30594368--30594394	8	3.4	8	100	0	54	44	0	0	55	0.99
30595765--30595793	15	1.9	15	100	0	58	44	0	0	55	0.99
30595766--30595836	26	2.8	25	73	14	72	46	0	1	52	1.09
30596017--30596051	16	2.2	16	89	0	52	25	22	5	45	1.74
30596706--30596755	16	2.8	18	76	14	59	46	2	6	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30604094--30604129	16	2.2	16	100	0	72	25	0	36	38	1.56
30604365--30604399	18	2.0	17	88	5	52	54	0	0	45	0.99
30604501--30604550	15	3.5	15	81	8	50	50	2	0	48	1.12
30604252--30604566	156	2.0	156	93	1	533	42	3	5	48	1.41
30604499--30604788	120	2.4	121	91	5	473	48	4	3	43	1.41
30604836--30604883	26	1.9	25	84	16	64	52	2	0	45	1.12
30604792--30605019	92	2.5	92	82	8	234	47	3	3	45	1.37
30617855--30617904	18	2.8	18	84	6	66	32	44	0	24	1.54
30620724--30620871	72	2.1	72	82	5	174	22	20	25	31	1.98
30621469--30621522	21	2.5	21	85	8	65	18	1	40	38	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172