genome.fa.s22.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  145  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41871743--41872083	102	3.4	102	80	8	396	29	26	16	27	1.96
41876009--41876047	19	2.0	20	85	5	53	28	20	5	46	1.72
41882253--41882286	16	2.1	16	94	0	59	20	29	11	38	1.88
41884052--41884204	81	1.9	81	81	5	184	33	15	19	32	1.93
41884129--41884524	44	8.9	44	74	6	231	32	15	20	30	1.94
41884129--41884530	88	4.5	86	75	7	284	33	15	20	30	1.94
41884344--41884524	94	1.9	95	81	3	222	30	17	21	29	1.96
41886038--41886075	4	9.5	4	88	0	58	23	5	0	71	1.07
41886148--41886199	24	2.2	24	82	6	61	19	3	5	71	1.22
41887925--41887954	13	2.2	13	94	5	51	53	0	3	43	1.17
41892070--41892104	14	2.6	14	86	4	54	60	2	0	37	1.12
41896999--41897046	23	2.1	23	100	0	96	35	12	16	35	1.87
41899399--41899534	59	2.3	58	80	13	163	42	16	19	21	1.89
41900384--41900437	16	3.4	16	92	0	81	31	0	33	35	1.58
41900416--41900506	45	2.0	44	85	2	119	31	5	27	35	1.80
41900653--41900875	120	1.9	120	98	0	428	49	6	2	42	1.40
41900769--41900820	15	3.6	15	80	12	56	53	1	0	44	1.11
41904238--41904343	37	3.2	32	75	19	108	44	0	1	53	1.11
41904300--41904341	15	2.8	15	78	10	50	50	0	0	50	1.00
41908102--41908370	46	6.3	45	78	16	295	35	14	20	28	1.93
41908138--41908292	36	4.0	36	79	15	184	36	14	20	28	1.92
41908102--41908336	82	2.9	82	95	0	407	36	13	20	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41909918--41909972	19	2.9	19	89	7	78	52	5	0	41	1.24
41913576--41913627	27	2.0	25	88	11	77	57	3	3	34	1.35
41916141--41916165	3	8.3	3	100	0	50	68	0	0	32	0.90
41917474--41918006	125	4.3	125	86	2	716	30	18	21	28	1.97
41917474--41918006	249	2.1	249	91	1	852	30	18	21	28	1.97
41921186--41921481	22	13.6	22	69	16	91	22	1	27	48	1.57
41921186--41921930	44	17.4	44	71	14	340	23	0	27	49	1.55
41921201--41921390	67	2.9	67	75	9	192	22	1	24	52	1.54
41921425--41921492	7	9.6	7	75	20	61	19	0	32	48	1.49
41921425--41921468	15	2.8	16	86	6	63	20	0	31	47	1.50
41921425--41921527	15	6.5	15	72	19	59	21	0	29	49	1.50
41921446--41921492	13	3.4	13	91	8	67	17	0	36	46	1.48
41921468--41921520	13	3.8	14	81	16	65	20	0	30	49	1.50
41921495--41921541	21	2.2	22	84	3	60	21	0	27	51	1.48
41921483--41921577	50	1.9	50	91	4	156	23	0	27	49	1.50
41921433--41921542	35	3.3	34	74	19	81	21	0	30	48	1.51
41921441--41921570	28	4.6	29	74	12	99	21	0	30	48	1.50
41921441--41921650	22	9.5	22	69	14	103	23	0	28	48	1.55
41921483--41921600	50	2.3	48	80	12	128	24	0	26	49	1.51
41921611--41921670	21	3.0	19	85	7	75	26	3	25	45	1.69
41921808--41921882	15	5.0	15	69	19	50	20	0	28	52	1.47
41921807--41921868	29	2.1	29	82	5	72	17	0	29	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41921708--41921924	22	10.1	22	75	12	186	21	0	26	52	1.47
41921709--41921927	21	10.2	21	72	10	133	21	0	27	51	1.48
41922025--41922073	15	3.3	15	80	2	55	20	0	28	51	1.48
41922046--41922961	22	42.7	22	68	15	222	21	0	28	49	1.55
41922054--41922246	21	9.0	21	73	10	131	21	1	27	49	1.56
41922054--41922246	43	4.5	41	79	10	174	21	1	27	49	1.56
41922183--41922501	172	1.9	171	87	0	476	21	0	29	47	1.54
41922303--41922381	29	2.7	29	80	2	95	12	0	32	54	1.38
41922305--41922374	15	4.7	15	75	10	72	10	0	34	55	1.33
41922463--41922559	51	1.9	51	85	6	135	22	0	26	50	1.49
41922470--41922529	29	2.1	29	81	6	68	25	0	26	48	1.52
41922621--41922680	21	2.9	22	85	7	81	25	1	23	50	1.59
41922872--41922951	21	3.9	21	87	9	112	23	2	27	46	1.65
41922845--41922951	41	2.6	41	83	8	135	22	1	28	46	1.62
41922842--41922961	21	5.6	21	77	16	99	20	1	29	48	1.60
41928115--41928196	3	27.3	3	74	18	57	29	2	2	65	1.18
41928115--41928176	23	2.7	23	80	9	81	30	1	1	66	1.11
41928115--41928181	15	4.4	15	80	16	75	31	1	1	65	1.10
41931895--41931919	12	2.1	12	100	0	50	36	8	24	32	1.84
41931998--41932037	20	2.0	20	90	0	62	30	20	15	35	1.93
41940022--41940415	50	7.9	50	70	2	281	29	22	25	23	1.99
41940017--41940414	100	4.0	100	96	0	724	29	21	24	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41942493--41942678	37	5.0	37	95	0	309	26	20	14	37	1.92
41945061--41945122	23	2.7	23	78	9	72	29	1	3	66	1.17
41945061--41945127	8	8.8	8	78	15	54	29	1	2	65	1.16
41945061--41945127	15	4.4	15	76	16	66	29	1	2	65	1.16
41958690--41958735	18	2.6	18	80	13	51	8	21	4	65	1.38
41959401--41959452	24	2.2	24	86	6	70	51	7	1	38	1.42
41960053--41960138	35	2.4	35	80	16	97	48	1	3	46	1.26
41960149--41960223	4	18.5	4	74	15	57	72	4	24	0	1.02
41960149--41960226	17	4.8	16	67	17	54	70	3	25	0	1.04
41960149--41960232	22	3.7	21	75	17	69	71	3	25	0	1.02
41960498--41960533	18	1.9	19	88	5	56	38	0	27	33	1.57
41961038--41961171	40	3.4	40	78	9	141	25	16	25	32	1.96
41963769--41963820	24	2.2	24	85	0	68	50	7	3	38	1.50
41964708--41964759	24	2.2	24	85	0	68	50	7	3	38	1.50
41966883--41966934	20	2.5	20	84	9	61	55	5	0	38	1.24
41968972--41969059	43	2.0	44	88	2	133	67	12	3	17	1.36
41969740--41969786	21	2.2	21	88	0	67	2	44	19	34	1.62
41975256--41975482	9	26.0	9	73	11	186	32	1	21	44	1.62
41975292--41975407	61	1.9	61	82	7	146	31	2	19	45	1.64
41975294--41975481	104	1.8	104	90	2	306	32	2	20	45	1.63
41975466--41976246	57	13.9	57	77	10	691	38	5	9	46	1.59
41975627--41975727	37	2.7	37	95	0	184	37	5	8	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41975639--41975893	129	2.0	129	95	0	456	37	5	9	47	1.60
41975728--41975856	37	3.5	37	90	4	199	36	6	10	47	1.62
41975466--41976251	336	2.3	337	84	5	1054	38	5	9	46	1.59
41975838--41975932	20	5.0	19	74	12	79	43	3	8	45	1.50
41975886--41975981	20	4.9	20	71	12	83	42	6	7	43	1.57
41975963--41976358	37	10.6	37	79	7	354	37	5	9	47	1.59
41975857--41976356	225	2.2	225	95	1	894	39	5	9	46	1.59
41976111--41976206	20	4.9	20	72	12	92	42	5	7	44	1.54
41976297--41976358	20	3.2	20	88	4	90	40	4	6	48	1.50
41978518--41978559	19	2.2	19	86	0	57	26	2	42	28	1.67
41980639--41980968	114	2.9	111	78	5	331	27	23	23	26	2.00
41980950--41981030	40	2.1	40	86	4	112	17	17	22	43	1.88
41981165--41981218	27	2.0	27	82	13	67	53	3	11	31	1.53
41995697--41995796	50	2.0	51	82	5	123	35	22	22	21	1.96
42002574--42002634	30	2.0	31	84	9	81	31	16	4	47	1.68
42002616--42002680	31	2.1	32	85	5	89	38	12	6	43	1.67
42002616--42002681	30	2.2	31	83	8	82	39	12	6	42	1.67
42003516--42003542	2	13.5	2	100	0	54	51	0	0	48	1.00
42006548--42006586	20	1.9	21	85	15	55	61	2	12	23	1.43
42012421--42012453	12	2.8	12	86	4	50	63	0	36	0	0.95
42013319--42013397	33	2.4	33	91	0	131	26	17	26	29	1.98
42016139--42016587	41	10.4	42	71	11	243	30	20	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42016138--42016606	44	10.8	44	71	10	263	30	20	21	27	1.98
42016136--42016606	218	2.2	215	95	1	834	30	19	21	27	1.98
42016599--42016772	44	4.1	41	71	15	149	29	21	23	25	1.99
42016617--42016779	84	1.9	85	81	7	195	29	21	23	25	1.99
42018889--42019404	214	2.4	215	93	1	867	27	16	21	33	1.95
42026199--42026282	44	1.9	44	82	0	105	30	19	25	25	1.98
42026205--42026366	87	1.9	87	80	2	191	33	19	20	25	1.96
42026026--42026497	218	2.2	215	91	1	775	30	19	22	27	1.98
42026464--42026662	44	4.7	41	71	13	136	28	22	23	26	1.99
42028600--42028670	38	1.9	36	88	5	106	18	5	9	66	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172