genome.fa.s22.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  132  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38000378--38000411	18	1.9	17	88	5	50	41	2	0	55	1.15
38005280--38005304	12	2.1	12	100	0	50	24	24	8	44	1.80
38009489--38009537	24	2.0	24	88	8	71	46	10	8	34	1.67
38010375--38010419	10	4.3	10	80	8	54	17	0	8	73	1.08
38010375--38010419	21	2.1	21	84	8	56	17	0	8	73	1.08
38012499--38012540	21	2.0	20	90	4	66	28	30	4	35	1.78
38012711--38012782	21	3.5	21	79	3	85	45	18	19	16	1.85
38013618--38013662	17	2.6	17	76	13	56	26	4	17	51	1.65
38013799--38013910	21	5.4	21	77	9	95	16	19	16	47	1.83
38013801--38013905	42	2.5	42	84	3	133	18	19	16	46	1.84
38016990--38017121	68	1.9	68	100	0	264	26	14	19	39	1.90
38020404--38020440	19	1.9	19	88	0	56	37	10	0	51	1.37
38025510--38025603	46	2.0	46	85	0	125	40	7	19	32	1.79
38027359--38027392	3	11.3	3	100	0	68	67	0	0	32	0.91
38032637--38032802	74	2.2	75	80	3	174	37	18	13	30	1.89
38032945--38033007	24	2.8	22	77	11	74	23	22	17	36	1.95
38034221--38034249	3	9.7	3	100	0	58	65	0	34	0	0.93
38034495--38034522	5	5.6	5	100	0	56	82	0	17	0	0.68
38034721--38035015	150	2.0	146	80	6	328	42	6	5	45	1.52
38040704--38040775	37	2.0	36	86	2	99	12	20	19	47	1.82
38044956--38045000	20	2.1	21	92	8	74	51	4	24	20	1.66
38049729--38049782	19	2.8	19	74	23	58	27	0	24	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38056685--38056718	16	2.1	16	88	0	50	11	11	2	73	1.20
38056711--38056743	17	1.9	17	88	11	50	21	0	0	78	0.75
38057721--38057922	106	1.9	109	87	5	302	30	16	20	32	1.95
38058627--38058671	17	2.7	15	83	12	54	46	0	6	46	1.29
38059341--38059405	20	3.0	21	80	8	78	61	29	3	6	1.35
38059329--38059403	23	3.4	21	75	14	71	64	26	2	6	1.32
38062569--38062630	24	2.6	24	94	0	115	29	17	17	35	1.93
38064929--38065018	10	9.0	9	71	19	56	42	4	0	53	1.21
38064928--38065016	20	4.5	19	72	12	72	42	4	0	52	1.21
38065125--38065204	20	4.1	20	77	3	63	23	21	20	35	1.96
38068789--38068819	6	5.2	6	92	0	53	32	16	35	16	1.91
38069063--38069559	246	2.0	246	99	0	985	28	16	12	42	1.84
38072405--38072472	26	2.6	25	84	13	77	66	0	5	27	1.15
38072404--38072472	22	3.0	22	82	16	70	65	0	5	28	1.16
38072408--38072472	4	15.0	4	76	17	51	66	0	4	29	1.12
38072427--38072487	13	4.7	13	75	18	56	72	0	8	19	1.10
38073282--38073321	16	2.4	16	87	4	53	42	2	15	40	1.60
38073435--38073565	40	3.3	40	73	11	126	25	18	24	32	1.97
38075581--38075643	26	2.3	28	86	5	85	36	0	1	61	1.05
38077535--38077617	24	3.4	24	82	11	107	31	24	28	15	1.96
38077506--38077659	49	3.1	49	83	4	141	33	22	25	18	1.97
38077538--38077659	50	2.5	49	84	5	149	34	22	26	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38077524--38077659	25	5.5	25	77	11	131	33	22	27	16	1.95
38077587--38077668	25	3.3	24	75	13	76	36	21	23	18	1.95
38079601--38079637	19	2.0	19	89	5	58	45	21	0	32	1.52
38079667--38079716	9	5.4	9	76	4	55	44	2	0	54	1.11
38082560--38082586	12	2.2	12	100	0	54	51	0	40	7	1.30
38085921--38085963	21	2.0	21	95	0	77	27	0	37	34	1.57
38085944--38085976	16	2.1	16	94	0	57	33	0	36	30	1.58
38085955--38086049	45	2.1	44	88	1	136	34	5	27	32	1.79
38086211--38086245	18	2.0	17	88	5	52	54	0	0	45	0.99
38086169--38086241	27	2.7	27	76	8	76	52	2	0	45	1.15
38086130--38086401	144	1.9	147	92	3	469	46	2	3	46	1.35
38086355--38086389	18	2.0	17	88	5	52	54	0	0	45	0.99
38090366--38090390	6	4.2	6	100	0	50	16	0	0	84	0.63
38090405--38090463	25	2.3	26	91	2	93	35	0	1	62	1.05
38098988--38099031	11	3.8	11	80	11	52	31	0	4	63	1.14
38109249--38109290	21	2.0	21	100	0	84	28	14	14	42	1.84
38113861--38113899	6	6.5	6	88	11	62	30	17	33	17	1.94
38117251--38117436	92	2.0	92	100	0	372	46	26	9	16	1.78
38123786--38123815	2	15.0	2	100	0	60	50	0	50	0	1.00
38125053--38125094	22	1.9	22	85	0	57	38	0	2	59	1.10
38127785--38127846	32	1.9	33	86	3	90	45	3	3	48	1.34
38137024--38137085	21	3.0	21	69	9	63	37	17	30	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38137020--38137142	42	2.9	42	80	0	147	43	17	23	15	1.88
38137008--38137152	42	3.5	42	76	7	141	43	17	22	16	1.88
38142574--38142619	20	2.5	20	82	10	62	45	0	2	52	1.13
38144732--38144757	9	2.9	9	100	0	52	23	23	46	7	1.78
38147542--38147636	47	2.0	48	95	2	174	32	15	23	28	1.95
38162782--38162823	2	21.0	2	100	0	84	50	0	0	50	1.00
38165260--38165286	13	2.1	13	100	0	54	22	14	0	62	1.31
38168071--38168351	139	2.0	139	97	0	535	38	12	18	29	1.88
38171603--38171875	136	2.0	136	97	1	521	41	16	16	25	1.89
38175363--38175468	53	2.0	53	100	0	212	39	16	11	32	1.85
38175571--38175595	13	1.9	13	100	0	50	8	0	24	68	1.16
38177245--38177345	41	2.5	40	85	4	123	30	18	23	26	1.98
38191383--38191432	26	2.0	25	84	4	64	56	2	10	32	1.44
38191394--38191445	22	2.4	22	76	0	59	51	1	7	38	1.42
38192388--38192426	21	1.9	21	89	5	62	74	0	17	7	1.05
38193110--38193448	132	2.6	132	92	1	547	25	22	18	33	1.97
38193340--38193533	88	2.2	88	94	0	334	24	22	21	31	1.98
38193209--38193888	220	3.1	220	91	0	1146	25	22	19	32	1.97
38193551--38193756	88	2.3	88	93	0	349	25	21	19	33	1.97
38193724--38194064	44	7.8	44	66	11	187	26	25	18	30	1.98
38193636--38194464	132	6.3	132	93	0	1383	26	23	18	31	1.97
38193132--38194149	352	2.9	350	81	5	1235	25	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38193209--38194020	220	3.7	216	82	7	761	25	22	19	31	1.98
38195882--38195915	14	2.3	15	95	5	61	11	5	0	82	0.83
38196703--38196741	12	3.2	12	89	7	53	2	15	0	82	0.79
38196703--38196747	23	2.0	23	81	0	54	4	15	2	77	1.02
38199433--38199478	19	2.4	19	85	7	58	45	10	19	23	1.82
38201874--38201923	26	2.0	25	84	4	64	56	2	10	32	1.44
38201885--38201936	22	2.4	22	76	0	59	51	1	7	38	1.42
38204510--38204548	20	1.9	20	84	5	51	56	20	5	17	1.60
38209627--38209662	18	1.9	18	88	5	54	63	0	30	5	1.17
38214854--38214878	8	3.1	8	100	0	50	12	24	0	64	1.27
38214923--38214966	23	1.9	22	82	17	54	36	25	0	38	1.56
38215110--38215287	51	3.5	50	85	3	241	30	28	17	23	1.97
38215107--38215292	101	1.9	100	88	5	277	31	27	17	23	1.96
38220603--38220628	9	2.9	9	100	0	52	23	7	0	69	1.14
38225539--38225563	11	2.3	11	100	0	50	60	0	0	40	0.97
38225527--38225582	27	2.1	27	86	3	78	60	0	0	39	0.97
38225909--38225943	13	2.5	14	90	9	54	51	22	5	20	1.68
38229492--38229531	21	1.9	21	94	0	71	57	10	10	22	1.61
38232118--38232152	15	2.3	15	90	0	52	37	8	8	45	1.65
38232167--38232192	2	13.0	2	100	0	52	50	0	50	0	1.00
38235549--38235599	10	5.1	10	74	9	50	54	1	0	43	1.11
38235549--38235599	20	2.5	20	84	6	68	54	1	0	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38240534--38240579	20	2.3	21	85	7	60	56	2	0	41	1.11
38240903--38240936	18	1.9	18	88	5	52	41	0	0	58	0.98
38240962--38241132	87	2.0	87	85	5	231	36	7	19	36	1.80
38243189--38243233	24	1.9	24	86	4	65	26	15	20	37	1.92
38257239--38257267	2	14.5	2	100	0	58	51	0	48	0	1.00
38262115--38262161	21	2.3	21	85	7	62	36	12	10	40	1.78
38272058--38272304	27	9.1	27	76	8	162	43	20	14	21	1.87
38272058--38272210	81	1.9	81	85	8	213	43	21	13	21	1.86
38272058--38272371	54	5.8	53	77	5	211	42	21	14	21	1.88
38272058--38272237	81	2.2	81	80	6	195	43	20	14	21	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172