genome.fa.s22.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  133  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38272055--38272343	27	10.7	27	75	8	95	42	20	15	21	1.89
38272407--38272496	24	3.8	24	87	0	108	23	8	24	43	1.82
38272434--38272515	24	3.4	24	84	0	101	23	7	21	47	1.75
38272684--38272761	32	2.4	32	76	4	86	19	17	23	39	1.92
38283262--38283314	17	3.1	17	83	0	70	49	3	20	26	1.66
38296016--38296166	76	2.0	76	93	0	257	26	15	33	25	1.95
38297751--38297927	31	5.7	31	84	4	216	30	8	15	45	1.76
38305242--38305418	31	5.7	31	84	4	216	30	8	15	45	1.76
38309812--38309859	24	2.0	24	87	0	69	45	10	2	41	1.50
38309815--38309856	21	2.0	21	95	0	75	45	9	2	42	1.49
38313104--38313141	18	2.2	17	90	4	58	34	2	0	63	1.09
38312985--38313642	120	5.5	118	89	5	907	42	1	3	51	1.30
38313346--38313500	18	9.0	17	65	22	74	42	1	1	54	1.19
38313392--38313434	22	1.9	23	85	4	61	37	0	2	60	1.10
38312985--38313530	241	2.3	239	93	2	934	42	1	3	52	1.27
38313586--38313620	18	2.0	17	88	5	52	45	0	0	54	0.99
38313586--38313640	15	3.4	16	80	16	53	47	0	1	50	1.11
38312985--38313642	241	2.7	233	87	7	797	42	1	3	51	1.30
38313856--38313924	16	4.2	16	92	3	120	37	36	0	26	1.57
38313856--38313924	33	2.1	32	94	2	120	37	36	0	26	1.57
38314233--38314285	26	2.1	25	86	6	72	22	7	0	69	1.13
38321116--38321158	17	2.4	18	80	7	52	39	9	0	51	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38326540--38326611	34	2.1	34	82	5	83	54	13	2	29	1.54
38331787--38331852	29	2.2	29	84	10	80	31	12	9	46	1.72
38337380--38337417	18	2.1	19	85	9	53	50	2	0	47	1.15
38337594--38337650	16	3.6	16	95	0	87	29	0	36	33	1.58
38337896--38337930	18	2.0	17	88	5	52	54	0	0	45	0.99
38338030--38338071	15	2.7	16	82	14	52	52	2	0	45	1.13
38337783--38338080	154	1.9	156	95	2	546	44	3	5	47	1.41
38338039--38338173	15	8.9	15	67	24	70	51	3	2	42	1.32
38337822--38338137	154	2.0	155	83	7	401	46	4	3	45	1.39
38338099--38338189	44	2.1	43	81	6	103	53	3	2	40	1.29
38338079--38338297	120	1.8	119	88	6	336	50	6	3	39	1.46
38338263--38338296	17	2.0	17	94	0	59	50	0	5	44	1.26
38338329--38338523	93	2.1	92	88	4	286	47	4	4	44	1.41
38340085--38340152	34	2.0	34	100	0	136	29	23	17	29	1.97
38340296--38340452	78	2.0	78	86	0	215	26	17	24	31	1.97
38343253--38343308	9	6.3	9	76	12	53	0	23	8	67	1.18
38343253--38343308	18	3.2	18	78	12	62	0	23	8	67	1.18
38353405--38353482	40	2.0	40	84	5	104	44	0	0	55	0.99
38357262--38357357	42	2.3	42	90	0	156	38	13	26	21	1.91
38361145--38361180	17	2.1	18	89	5	56	33	5	0	61	1.19
38367168--38367206	5	8.0	5	97	2	71	61	0	0	38	0.96
38370597--38370667	25	2.8	25	93	0	115	21	15	21	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38370603--38370676	25	3.0	25	89	0	112	20	16	21	41	1.90
38370667--38370725	22	2.7	22	83	0	82	15	25	18	40	1.90
38377204--38377296	46	2.0	45	83	2	114	43	19	10	26	1.84
38379316--38379354	14	2.7	14	84	4	51	84	10	0	5	0.76
38380643--38380796	67	2.3	65	82	7	175	25	9	1	63	1.33
38390098--38390122	7	3.6	7	100	0	50	76	0	12	12	1.04
38390811--38390844	18	1.9	18	88	5	52	11	11	5	70	1.32
38398102--38398132	6	5.2	6	96	0	53	16	45	19	19	1.86
38404978--38405014	19	1.9	19	94	0	65	64	16	0	18	1.29
38405525--38405566	20	2.3	19	88	12	61	26	0	4	69	1.08
38407532--38407652	42	2.9	42	86	0	161	15	24	19	40	1.90
38407532--38407642	21	5.3	21	69	8	73	16	24	19	39	1.91
38416286--38416322	18	2.0	19	89	5	58	29	2	5	62	1.31
38432891--38433039	21	7.1	21	78	4	149	18	17	16	46	1.84
38432892--38432939	20	2.3	20	85	3	60	22	16	16	43	1.87
38432891--38433034	63	2.3	62	83	3	173	19	18	15	46	1.84
38438026--38438107	27	3.1	26	94	3	137	52	8	7	31	1.59
38446304--38446338	18	1.9	18	88	11	54	37	8	20	34	1.83
38447764--38447802	2	19.5	2	100	0	78	48	0	51	0	1.00
38449371--38449405	17	1.9	19	88	11	56	74	8	0	17	1.06
38455297--38455330	11	3.1	11	91	0	59	17	32	2	47	1.63
38455293--38455346	22	2.5	22	83	16	69	22	29	1	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38455310--38455411	49	2.0	52	83	11	131	27	22	1	48	1.62
38455426--38455481	21	2.6	22	97	2	105	48	26	0	25	1.52
38455449--38455511	30	2.1	30	100	0	126	50	26	0	22	1.49
38455479--38455538	22	2.7	22	94	0	102	50	26	0	23	1.50
38455428--38455559	52	2.6	51	89	8	200	48	27	0	23	1.56
38455479--38455571	22	4.1	22	77	18	77	49	25	1	23	1.57
38455559--38455599	22	1.9	21	85	5	55	53	31	0	14	1.41
38455639--38455716	40	2.0	40	81	0	93	24	30	25	19	1.98
38457229--38457265	2	18.5	2	100	0	74	48	0	51	0	1.00
38458805--38458879	30	2.5	30	86	0	105	33	13	17	36	1.88
38463737--38463788	24	2.2	24	89	0	77	36	3	9	50	1.54
38468151--38468202	24	2.2	24	89	0	77	36	3	9	50	1.54
38471940--38472002	22	2.9	22	87	0	99	25	50	11	12	1.73
38482147--38482948	403	2.0	398	97	1	1507	32	20	22	24	1.98
38485684--38485828	72	2.0	74	87	5	215	32	13	20	33	1.92
38485684--38485860	72	2.5	68	83	6	203	31	14	22	32	1.93
38485864--38486244	72	5.2	72	91	3	584	31	16	18	33	1.93
38485864--38487226	73	18.2	72	77	11	852	29	16	20	33	1.95
38485878--38487481	377	4.2	364	78	11	1222	29	16	20	33	1.95
38486477--38487230	232	3.3	228	85	6	928	28	18	20	32	1.96
38486674--38487478	159	5.0	159	75	14	561	28	17	20	33	1.96
38487502--38487669	89	1.9	90	83	3	223	29	18	19	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38488350--38488412	22	2.9	22	87	0	99	25	50	11	12	1.73
38489176--38489389	107	2.0	104	96	2	392	18	17	15	48	1.81
38492495--38492542	22	2.2	22	81	7	53	54	2	8	35	1.42
38495849--38495897	2	24.5	2	100	0	98	0	51	0	48	1.00
38503174--38503211	20	1.9	20	88	0	58	31	2	0	65	1.06
38508430--38508528	20	4.7	21	72	15	71	57	2	2	38	1.22
38508430--38508517	20	4.2	20	76	14	72	56	2	2	38	1.24
38508439--38508492	19	2.8	19	86	5	65	55	1	3	38	1.28
38508448--38508492	18	2.5	19	82	7	58	55	2	2	40	1.24
38508450--38508536	19	4.8	18	66	7	52	58	3	1	36	1.22
38508512--38508569	30	2.0	29	89	3	89	72	3	1	22	1.09
38518728--38518798	35	2.0	35	97	0	133	33	12	5	47	1.65
38521911--38521947	12	3.1	12	88	0	56	51	37	2	8	1.46
38521939--38521970	16	2.0	16	93	0	55	50	15	0	34	1.45
38522792--38522825	16	2.1	16	100	0	68	29	20	11	38	1.88
38526366--38526421	28	2.0	28	100	0	112	28	14	10	46	1.78
38531753--38531804	21	2.5	21	87	0	68	15	23	19	42	1.89
38531692--38531785	42	2.2	42	84	3	127	17	20	19	43	1.88
38540783--38540884	42	2.4	42	87	6	127	15	25	17	41	1.89
38540827--38540888	21	3.0	21	75	0	79	14	24	19	41	1.88
38540795--38540888	42	2.2	42	90	3	145	12	24	20	42	1.87
38541055--38541111	25	2.3	25	100	0	114	36	3	0	59	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38544864--38544911	17	2.8	17	72	12	53	56	2	8	33	1.41
38557453--38557485	11	2.9	12	86	13	52	33	0	0	66	0.92
38557609--38557671	30	2.1	30	93	0	108	57	14	3	25	1.52
38557701--38557743	22	2.0	22	85	0	59	55	13	13	16	1.69
38562829--38562906	15	5.2	15	70	11	70	43	7	23	25	1.80
38562823--38562916	30	3.1	30	93	1	152	42	6	25	25	1.78
38567486--38567570	30	2.8	30	92	0	134	44	5	22	27	1.75
38567500--38567570	15	4.7	15	70	13	65	42	7	22	28	1.79
38569042--38569104	20	3.0	20	71	11	54	38	1	0	60	1.07
38579046--38579103	9	6.3	9	76	9	55	31	1	1	65	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172