genome.fa.s22.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  116  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33345477--33345511	18	2.0	17	88	5	52	45	0	0	54	0.99
33345306--33345767	120	3.9	120	97	1	867	44	1	6	48	1.36
33345306--33345767	239	1.9	239	96	1	865	44	1	6	48	1.36
33345529--33345723	66	3.2	65	67	23	193	43	2	6	48	1.39
33345596--33345630	18	2.0	17	88	5	52	45	0	0	54	0.99
33345715--33345750	18	2.0	18	88	0	54	44	0	0	55	0.99
33345715--33345770	15	3.4	16	80	14	53	46	0	1	51	1.11
33345989--33346019	16	1.9	16	100	0	62	38	32	0	29	1.57
33350554--33350588	17	2.1	17	88	0	52	65	8	2	22	1.34
33350570--33350631	30	2.1	30	81	3	72	61	4	11	22	1.48
33351351--33351390	19	2.2	18	86	4	53	55	2	0	42	1.13
33351364--33351411	24	2.0	24	87	0	69	43	0	0	56	0.99
33351977--33352010	17	2.0	17	88	0	50	35	0	0	64	0.94
33357177--33357223	7	6.4	7	88	9	67	57	2	0	40	1.11
33357171--33357217	14	3.2	14	80	17	51	55	0	0	44	0.99
33357892--33357954	33	1.9	33	93	0	108	1	33	17	47	1.57
33359095--33359119	11	2.3	11	100	0	50	84	0	0	16	0.63
33364142--33364193	21	2.5	20	71	3	50	44	1	1	51	1.23
33367806--33367837	7	4.6	7	96	0	55	40	9	31	18	1.83
33367762--33367875	58	2.0	58	98	0	219	32	14	25	27	1.95
33376943--33377003	25	2.4	25	81	8	61	34	1	4	59	1.29
33382519--33382545	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33383065--33383098	6	5.5	6	89	6	50	14	2	0	82	0.79
33389396--33389426	4	7.8	4	92	0	53	22	0	51	25	1.48
33390110--33390155	21	2.2	20	85	11	58	32	2	4	60	1.28
33390115--33390157	20	2.0	22	91	8	72	34	2	2	60	1.22
33390117--33390164	21	2.2	21	85	10	62	37	2	2	58	1.22
33391231--33391272	21	2.0	21	81	13	50	57	4	9	28	1.51
33392505--33392540	17	2.1	17	89	0	54	69	2	0	27	1.02
33396760--33396808	20	2.5	19	77	6	53	16	12	6	65	1.45
33396813--33396837	11	2.3	11	100	0	50	8	12	28	52	1.66
33398206--33398248	20	2.2	20	100	0	86	37	4	9	48	1.56
33399434--33399600	72	2.3	72	83	4	194	25	5	12	56	1.57
33400961--33401003	12	3.6	12	83	0	59	27	6	37	27	1.83
33402818--33402931	40	2.8	40	85	2	138	17	28	33	20	1.95
33402991--33403028	9	4.2	9	89	0	58	15	0	26	57	1.38
33402991--33403028	18	2.1	18	100	0	76	15	0	26	57	1.38
33403137--33403704	125	4.5	125	88	2	802	30	16	23	29	1.96
33406857--33407543	43	15.8	42	80	7	553	25	1	26	46	1.59
33406857--33407543	197	3.5	196	82	5	738	25	1	26	46	1.59
33407521--33407567	14	3.4	14	75	16	53	27	0	29	42	1.56
33407529--33407577	14	3.6	14	74	17	50	26	0	30	42	1.55
33406857--33407543	22	31.7	22	79	5	675	25	1	26	46	1.59
33408122--33408161	17	2.3	18	82	4	55	50	7	25	17	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33410019--33410075	22	2.5	22	97	2	105	45	0	31	22	1.53
33410029--33410070	12	3.7	12	76	23	54	42	0	30	26	1.55
33429350--33429374	13	1.9	13	100	0	50	24	40	28	8	1.83
33431312--33431351	21	1.9	21	85	10	55	65	2	0	32	1.06
33431317--33431406	18	4.8	19	69	20	64	62	7	2	27	1.35
33437460--33437520	2	30.5	2	100	0	122	50	0	49	0	1.00
33438297--33438348	23	2.3	23	83	6	61	15	23	23	38	1.92
33438874--33439107	117	2.0	117	94	0	405	27	9	23	39	1.86
33440171--33440268	51	1.9	51	91	0	160	27	6	19	46	1.73
33442538--33442562	12	2.1	12	100	0	50	36	0	8	56	1.29
33442966--33443001	18	2.1	18	89	5	56	19	2	8	69	1.27
33443278--33443314	17	2.2	17	100	0	74	24	0	21	54	1.45
33444964--33445134	58	3.1	57	79	12	153	40	1	3	54	1.25
33445043--33445130	26	3.4	25	68	10	68	42	1	3	53	1.25
33445229--33445315	46	1.9	46	84	13	119	36	24	5	33	1.79
33445297--33445350	16	3.4	16	84	0	72	35	24	1	38	1.66
33446055--33446101	24	2.0	24	82	0	58	57	6	6	29	1.49
33461929--33461967	21	1.9	21	89	5	62	46	2	0	51	1.14
33462996--33463042	20	2.3	20	75	13	51	14	8	2	74	1.15
33463026--33463095	8	8.4	8	73	7	59	17	2	2	77	1.02
33463147--33463217	32	2.2	33	84	5	99	39	2	1	56	1.23
33463171--33463247	22	3.6	21	83	10	75	44	0	1	54	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33463179--33463247	22	3.1	21	84	10	84	44	0	1	53	1.09
33463279--33463315	17	2.1	19	85	10	51	35	0	0	64	0.94
33463297--33463355	22	2.7	23	75	19	72	33	0	3	62	1.12
33463632--33463671	18	2.2	18	77	0	53	52	0	7	40	1.30
33463621--33463677	20	3.0	20	79	10	73	52	0	5	42	1.24
33463676--33463731	20	2.8	20	78	8	69	58	0	3	37	1.15
33464168--33464252	40	2.1	41	88	2	127	34	7	4	54	1.49
33464176--33464263	40	2.2	40	81	4	97	35	6	4	53	1.48
33464315--33464463	71	2.1	71	91	3	237	51	4	4	40	1.40
33464449--33464478	14	2.2	14	94	5	53	50	0	0	50	1.00
33467322--33467376	12	4.0	13	75	25	51	50	1	0	47	1.11
33467330--33467387	29	2.0	29	83	12	75	56	0	0	43	0.99
33467375--33467557	57	3.2	56	70	22	171	55	4	2	36	1.36
33467577--33467625	23	2.3	21	86	10	64	57	0	0	42	0.99
33467577--33467670	20	4.5	20	68	19	66	58	1	0	40	1.05
33467624--33467692	22	2.9	24	72	12	70	57	4	0	37	1.18
33467708--33467773	18	3.2	21	74	22	61	74	3	1	21	1.04
33467722--33467773	18	2.9	18	79	20	65	75	3	1	19	1.06
33467930--33467974	9	5.0	9	84	10	56	73	4	0	22	1.01
33467994--33468049	20	2.8	20	71	15	53	73	1	10	14	1.18
33480480--33480741	67	3.9	65	88	7	314	18	23	18	40	1.92
33480480--33480751	35	8.1	35	83	8	323	18	22	18	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33480480--33480741	102	2.6	102	91	3	408	18	23	18	40	1.92
33483550--33483594	20	2.1	22	84	12	58	13	11	8	66	1.44
33503347--33503406	31	2.0	30	86	3	84	33	16	11	38	1.85
33513736--33513790	26	2.2	25	87	6	76	20	20	20	40	1.92
33517399--33517464	34	1.9	34	93	0	114	30	16	19	33	1.94
33525766--33525817	26	2.0	26	81	7	61	46	0	3	50	1.20
33525778--33525813	18	2.1	18	94	5	65	38	0	2	58	1.13
33527010--33527045	18	1.9	18	88	5	54	58	2	0	38	1.13
33527020--33527085	30	2.2	29	84	13	80	54	1	0	43	1.09
33531640--33531714	29	2.6	29	71	2	69	20	38	20	21	1.93
33535104--33535314	98	2.2	94	83	5	262	27	17	16	37	1.91
33542283--33542315	6	5.3	6	92	7	57	51	0	0	48	1.00
33542283--33542315	13	2.7	12	95	4	57	51	0	0	48	1.00
33550586--33551451	435	2.0	435	93	0	1471	32	12	30	23	1.92
33559380--33559460	29	2.7	29	84	5	90	30	4	14	49	1.65
33559402--33559460	29	2.0	30	90	3	93	30	5	13	50	1.63
33564455--33564480	12	2.2	12	100	0	52	23	0	46	30	1.53
33568346--33568383	14	2.7	14	80	15	51	44	2	10	42	1.52
33575631--33575721	4	22.8	4	69	12	53	65	1	7	25	1.25
33575612--33575663	23	2.2	24	86	3	70	69	0	5	25	1.10
33577723--33577895	51	3.5	51	74	11	182	28	19	16	35	1.94
33577431--33577937	95	5.3	95	77	7	483	29	20	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33577757--33578062	44	6.7	44	73	8	182	28	20	14	36	1.92
33577483--33578029	44	11.8	45	70	11	156	29	20	16	33	1.95
33584474--33584509	3	12.0	3	87	0	54	61	0	5	33	1.19
33584573--33584627	11	5.0	11	76	10	51	69	0	9	21	1.16
33584753--33584851	4	24.8	4	70	11	60	67	1	7	24	1.21
33584727--33584785	23	2.5	24	83	2	75	67	0	6	25	1.15
33587088--33587202	40	2.9	40	78	7	119	33	24	25	17	1.96
33587260--33587454	41	4.8	41	78	3	196	17	24	24	34	1.96
33587258--33587453	81	2.4	82	91	0	304	17	25	23	33	1.96
33589146--33589198	22	2.4	22	84	6	63	22	1	45	30	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172