genome.fa.s22.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  129  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36919627--36919717	25	3.7	24	79	5	56	26	28	15	29	1.96
36921587--36921640	27	2.0	27	88	0	81	25	1	0	72	0.95
36922705--36922740	18	2.0	18	88	0	54	30	2	2	63	1.22
36929361--36929392	16	2.1	16	94	5	57	59	0	0	40	0.97
36929353--36929405	24	2.1	26	86	10	74	56	0	0	43	0.99
36929363--36929420	24	2.4	22	78	16	53	55	0	1	43	1.10
36929364--36929422	28	2.1	27	81	12	66	54	0	1	44	1.10
36929621--36929661	19	2.2	19	86	8	57	65	7	19	7	1.41
36932659--36932736	39	2.0	39	100	0	156	28	25	15	30	1.96
36938123--36938246	34	3.7	34	85	5	146	41	0	15	43	1.46
36938367--36938614	125	2.0	127	82	4	306	37	16	16	29	1.91
36941918--36941968	24	2.1	24	81	0	57	19	19	35	25	1.95
36942123--36942161	18	2.2	18	95	0	69	41	10	25	23	1.86
36943702--36943729	9	3.1	9	100	0	56	42	0	0	57	0.99
36948263--36948314	25	2.1	24	85	3	68	67	1	1	28	1.12
36948278--36948333	29	1.9	29	82	7	69	62	3	3	30	1.29
36951439--36951474	19	1.9	19	88	5	56	33	2	0	63	1.08
36952561--36952608	21	2.2	21	79	13	53	47	2	2	47	1.25
36960623--36960661	18	2.2	17	86	13	53	33	0	20	46	1.51
36960887--36960984	23	4.3	23	90	2	162	20	21	26	31	1.98
36960889--36960977	45	2.0	45	95	0	160	19	22	26	31	1.97
36963393--36963622	125	1.9	121	87	5	336	38	22	20	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36972917--36973072	82	1.9	81	81	11	185	44	14	7	33	1.73
36973092--36973135	23	1.9	23	81	9	54	59	4	2	34	1.30
36973698--36973743	24	1.9	24	86	0	65	26	6	0	67	1.15
36973801--36973859	31	2.0	29	81	15	68	27	6	8	57	1.53
36981444--36981476	15	2.2	15	94	0	57	72	0	3	24	0.98
36989154--36989434	139	2.0	139	89	0	427	16	26	12	44	1.83
37004757--37004799	20	2.2	20	91	0	68	46	13	9	30	1.75
37004849--37004970	42	2.9	42	85	4	174	42	18	19	18	1.89
37013684--37013722	18	2.2	17	86	4	51	79	10	7	2	1.02
37014530--37014593	26	2.4	26	82	15	69	50	0	7	42	1.31
37052568--37052725	42	3.7	42	76	10	135	25	17	27	29	1.97
37056656--37056780	62	2.0	62	95	0	223	36	6	8	48	1.58
37056718--37056794	27	3.2	24	64	20	61	32	7	9	50	1.63
37058042--37058075	14	2.4	14	100	0	68	44	5	14	35	1.70
37059739--37059778	20	2.0	20	90	0	62	50	12	10	27	1.72
37059727--37059793	34	1.9	35	90	3	109	46	13	8	31	1.74
37059876--37059919	16	2.8	16	78	0	52	68	13	0	18	1.22
37059873--37059936	27	2.3	27	78	7	67	67	12	1	18	1.31
37060077--37060118	22	2.0	22	86	9	61	64	4	2	28	1.26
37060707--37060765	31	1.9	31	82	0	73	0	50	1	47	1.11
37060651--37060768	6	19.2	6	69	16	55	0	44	0	54	1.12
37065520--37065611	21	4.5	21	70	12	59	36	1	10	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37078192--37078228	10	3.7	10	86	13	58	62	0	0	37	0.96
37078200--37078290	46	1.9	48	82	4	114	56	1	6	36	1.33
37080665--37080694	16	1.9	15	93	6	51	56	0	13	30	1.37
37084920--37084964	2	22.5	2	100	0	90	48	0	51	0	1.00
37096276--37096313	20	2.0	20	94	5	69	60	0	2	36	1.11
37097466--37097502	16	2.3	17	86	13	60	62	0	0	37	0.96
37098415--37098462	21	2.3	21	92	0	78	33	16	14	35	1.89
37108781--37108832	15	3.2	15	73	19	50	53	3	1	40	1.30
37109189--37109249	23	2.4	27	84	15	87	44	4	4	45	1.46
37110411--37110460	24	2.1	24	100	0	100	16	4	20	60	1.52
37120090--37120203	57	2.0	57	98	0	219	34	16	12	36	1.86
37137156--37137221	29	2.2	29	82	12	73	46	10	15	27	1.78
37148312--37148365	16	3.3	16	76	2	63	18	1	20	59	1.47
37148312--37148372	16	3.7	16	75	4	59	18	1	21	59	1.47
37148867--37148920	25	2.2	25	86	0	72	57	1	1	38	1.20
37161656--37161721	33	2.0	33	82	5	80	28	10	16	43	1.81
37165157--37165233	2	38.5	2	92	0	118	0	51	0	48	1.00
37166625--37166690	15	4.4	15	96	0	123	45	45	0	9	1.35
37166625--37166689	8	8.7	7	75	12	58	46	46	0	7	1.31
37167702--37167754	3	17.7	3	92	0	70	32	5	1	60	1.31
37183853--37183909	29	2.0	29	89	0	87	24	14	28	33	1.94
37203160--37203401	50	4.7	50	84	7	290	19	30	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37203160--37203401	101	2.3	104	87	6	332	19	30	23	26	1.98
37203497--37203528	13	2.5	13	94	0	55	56	12	0	31	1.37
37209803--37210069	104	2.6	104	92	3	439	19	20	29	30	1.97
37212782--37213030	50	4.8	50	86	3	318	21	29	22	26	1.99
37212781--37213030	100	2.4	104	87	5	355	21	29	22	26	1.99
37213126--37213157	13	2.5	13	100	0	64	59	9	0	31	1.29
37236023--37236083	31	2.0	31	86	0	86	40	0	19	39	1.52
37247351--37247385	2	17.5	2	100	0	70	51	0	48	0	1.00
37264182--37264230	17	2.8	18	78	6	55	53	0	0	46	1.00
37267001--37267202	87	2.3	89	81	5	248	36	19	9	34	1.85
37267298--37267359	18	3.3	18	84	6	79	69	3	4	22	1.22
37267299--37267359	20	3.2	19	81	6	70	70	3	4	21	1.21
37267298--37267388	18	4.8	18	78	16	78	65	2	4	27	1.23
37267309--37267393	18	4.6	17	81	12	80	64	2	3	29	1.22
37267347--37267393	19	2.6	18	80	16	60	63	0	2	34	1.06
37267413--37267463	19	2.6	19	75	12	59	60	3	5	29	1.38
37267715--37267769	26	2.1	27	86	10	78	45	0	1	52	1.11
37267739--37267805	19	3.5	19	78	13	66	35	1	0	62	1.04
37267740--37267794	18	2.9	19	83	8	67	38	1	0	60	1.08
37269173--37269245	21	3.4	21	86	1	101	1	28	19	50	1.56
37269173--37269257	21	4.0	22	84	3	93	1	28	17	52	1.52
37271347--37271555	30	6.9	30	92	3	341	53	0	9	37	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37271347--37271555	59	3.5	60	91	3	341	53	0	9	37	1.33
37271350--37271551	89	2.2	91	92	3	336	53	0	8	37	1.32
37271877--37271957	39	2.1	39	92	0	135	56	8	13	20	1.63
37278570--37278598	14	2.1	14	93	6	51	27	0	3	68	1.05
37281753--37281781	11	2.7	11	94	5	51	37	0	20	41	1.53
37286085--37286111	3	9.0	3	100	0	54	0	33	0	66	0.92
37290646--37290672	6	4.5	6	100	0	54	0	0	62	37	0.95
37293623--37293652	16	1.9	15	93	6	51	50	0	6	43	1.28
37294537--37294578	21	2.0	22	90	4	68	83	0	4	11	0.79
37297752--37297809	29	2.0	29	83	6	73	34	10	8	46	1.69
37303905--37303947	20	2.3	19	84	15	54	34	0	0	65	0.93
37303910--37303979	20	3.3	20	74	18	61	34	0	4	61	1.16
37308490--37308573	37	2.2	39	85	4	109	32	21	10	35	1.88
37309016--37309066	18	2.8	18	84	0	66	27	5	29	37	1.80
37313848--37313901	16	3.3	16	73	14	56	48	9	3	38	1.53
37316968--37317648	348	2.0	350	95	0	1231	34	20	13	31	1.91
37320853--37321097	46	5.6	46	86	10	334	28	22	15	34	1.94
37320989--37321061	36	2.0	36	97	0	137	26	20	16	36	1.93
37320943--37321097	82	1.9	82	97	0	292	28	21	14	35	1.93
37329182--37329436	124	2.1	123	89	1	384	30	15	22	32	1.95
37331128--37331161	15	2.3	15	90	5	52	67	5	0	26	1.13
37331357--37331398	22	1.9	22	90	0	66	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37331370--37331428	30	2.0	30	93	0	100	33	0	35	30	1.58
37331348--37331450	52	2.0	51	85	9	138	34	0	33	32	1.58
37331400--37331491	22	4.2	22	83	10	125	40	0	29	30	1.57
37331400--37331491	44	2.1	44	89	4	141	40	0	29	30	1.57
37336137--37336215	32	2.5	31	79	4	86	37	3	8	49	1.52
37336300--37336330	16	1.9	16	93	0	53	12	3	9	74	1.19
37336512--37336558	23	2.0	23	87	8	67	61	6	2	29	1.32
37337132--37337198	27	2.4	28	95	5	118	43	5	17	32	1.74
37346126--37346307	50	3.5	50	83	4	184	26	19	28	25	1.99
37354095--37354188	30	3.2	30	60	19	70	22	28	10	38	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172