genome.fa.s22.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  115  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33159518--33159571	28	2.0	27	85	10	74	37	9	9	44	1.69
33159526--33159579	27	2.0	28	82	10	67	40	5	7	46	1.55
33161474--33161516	22	2.0	22	86	4	61	69	2	2	25	1.12
33162329--33162375	21	2.2	21	88	0	67	25	10	8	55	1.62
33168196--33168242	21	2.2	22	88	3	69	21	17	38	23	1.93
33173373--33173402	15	2.0	15	100	0	60	13	13	20	53	1.72
33174464--33174538	9	8.2	9	76	14	73	66	1	0	32	1.00
33174471--33174538	17	3.8	17	73	17	57	66	1	0	32	1.01
33174462--33174517	26	2.2	25	93	3	94	64	0	0	35	0.94
33174464--33174538	38	2.1	35	87	12	107	66	1	0	32	1.00
33177042--33177259	109	2.0	109	100	0	436	27	21	23	27	1.99
33179002--33179026	10	2.5	10	100	0	50	56	0	0	44	0.99
33178986--33179042	24	2.3	24	85	8	80	61	0	0	38	0.96
33179010--33179040	15	2.0	16	93	6	55	58	0	0	41	0.98
33180886--33180973	24	3.7	24	89	3	133	9	30	20	39	1.83
33181405--33181457	18	3.1	17	84	10	63	28	0	5	66	1.15
33183472--33183657	43	4.3	43	90	1	275	28	32	18	20	1.96
33187166--33187209	14	3.2	14	80	6	54	22	27	13	36	1.92
33187163--33187207	13	3.4	13	80	17	56	24	24	17	33	1.96
33188760--33188890	62	2.1	63	84	4	167	45	25	1	27	1.63
33189379--33189536	41	3.9	41	93	0	262	29	24	22	24	1.99
33190277--33190310	9	3.8	9	92	0	59	44	17	11	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33190274--33190310	18	2.1	18	100	0	74	45	16	10	27	1.80
33194498--33194685	59	3.2	59	66	11	150	41	3	3	51	1.35
33194487--33194772	119	2.4	119	94	1	475	42	2	4	50	1.36
33194607--33194662	15	3.5	18	75	24	63	42	0	0	57	0.99
33194561--33194743	64	3.1	56	66	24	133	41	2	6	49	1.41
33194727--33194761	18	2.0	17	88	5	52	45	0	0	54	0.99
33194715--33194986	144	1.9	147	93	3	478	47	2	3	46	1.35
33194871--33194905	18	2.0	17	88	5	52	45	0	0	54	0.99
33195067--33195161	45	2.1	44	83	9	113	33	24	6	35	1.81
33195142--33195193	16	3.2	16	91	0	77	36	34	0	28	1.58
33202402--33202540	41	3.5	39	74	6	111	32	25	17	25	1.97
33202660--33202726	21	3.2	21	74	16	59	47	13	0	38	1.43
33202697--33202743	24	2.0	24	84	16	62	48	17	0	34	1.47
33206873--33206924	20	2.5	21	87	3	79	36	0	1	61	1.07
33206868--33206932	20	3.0	21	82	8	71	41	0	1	56	1.08
33206940--33207072	15	8.2	15	70	21	56	43	0	3	52	1.21
33207044--33207072	15	1.9	15	100	0	58	55	0	0	44	0.99
33207155--33207197	20	2.1	20	91	4	68	62	0	0	37	0.95
33207111--33207198	33	2.7	33	75	3	97	59	0	0	40	0.98
33207166--33207230	32	2.1	31	86	11	89	61	0	0	38	0.96
33207175--33207239	22	2.9	22	76	19	71	64	0	0	35	0.94
33207237--33207338	32	3.4	30	80	14	111	78	2	9	8	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33207241--33207293	18	3.2	18	69	20	60	77	3	7	11	1.10
33207261--33207340	21	3.4	24	76	16	87	78	2	10	8	1.04
33207237--33207330	8	12.3	7	69	26	50	78	2	10	8	1.04
33207245--33207341	25	4.1	24	72	19	80	79	3	9	8	1.03
33208454--33208500	24	2.0	23	87	4	67	38	6	6	48	1.54
33210841--33210903	29	2.2	28	85	2	81	20	15	25	38	1.92
33211525--33211832	43	7.2	43	91	0	481	29	28	20	22	1.98
33211901--33211927	14	1.9	14	100	0	54	51	33	0	14	1.43
33213612--33213702	31	3.0	31	93	3	150	43	13	10	31	1.78
33219810--33219897	32	2.8	32	96	1	160	46	13	10	29	1.76
33219811--33219906	31	3.1	31	93	3	165	45	12	9	32	1.74
33225064--33225098	14	2.5	14	90	0	52	40	2	5	51	1.40
33225488--33225546	27	2.1	28	90	6	102	52	3	3	40	1.35
33226686--33226716	16	1.9	16	93	0	53	32	6	25	35	1.82
33227466--33227510	23	2.0	23	82	8	56	40	31	6	22	1.80
33227130--33228932	786	2.2	797	89	6	2713	37	17	9	35	1.82
33229176--33229308	41	3.2	41	77	3	115	26	28	24	20	1.99
33229401--33229747	113	3.1	113	91	0	550	27	22	23	27	1.99
33232123--33232179	9	6.3	9	85	0	78	40	22	12	24	1.88
33232123--33232179	27	2.1	27	93	0	96	40	22	12	24	1.88
33235848--33236049	72	2.8	71	83	5	262	22	26	30	20	1.98
33237679--33238159	159	3.0	159	85	0	651	24	25	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33239268--33239294	4	6.8	4	100	0	54	51	25	0	22	1.48
33255931--33256157	103	2.3	98	83	7	278	45	18	10	25	1.81
33257047--33257196	78	1.9	79	87	4	223	32	12	8	47	1.70
33257589--33257641	14	3.7	14	76	14	63	33	5	0	60	1.20
33258096--33258153	12	4.8	12	76	0	53	8	3	18	68	1.30
33258834--33258918	31	2.8	31	94	1	145	15	28	17	38	1.90
33263060--33263085	3	8.7	3	100	0	52	30	0	0	69	0.89
33264894--33264953	29	2.1	29	84	3	77	51	11	10	26	1.69
33269009--33269056	17	2.8	17	83	0	60	47	8	2	41	1.45
33270167--33270205	21	1.9	20	84	5	51	48	2	0	48	1.15
33279024--33279096	22	3.1	24	80	9	87	43	19	21	15	1.87
33279024--33279108	25	3.5	24	79	12	93	43	18	22	15	1.87
33280199--33280239	8	5.1	8	87	0	55	58	0	0	41	0.98
33280199--33280239	16	2.6	16	88	0	64	58	0	0	41	0.98
33287382--33287421	19	2.1	19	85	4	53	45	5	0	50	1.23
33290056--33290148	39	2.5	37	80	7	98	27	29	22	20	1.98
33290504--33290554	3	17.0	3	83	0	66	58	5	0	35	1.22
33290508--33290556	18	2.7	18	93	0	80	55	8	0	36	1.30
33290504--33290554	12	4.2	12	92	0	75	58	5	0	35	1.22
33291206--33291231	11	2.4	11	100	0	52	0	42	7	50	1.31
33291588--33291630	21	2.0	21	81	0	50	58	6	0	34	1.25
33296879--33296971	39	2.5	37	80	7	98	27	29	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33297325--33297369	3	15.0	3	80	0	54	57	6	0	35	1.25
33297329--33297369	15	2.7	15	88	0	64	56	7	0	36	1.27
33298022--33298047	11	2.4	11	100	0	52	0	42	7	50	1.31
33303472--33303514	21	2.0	21	82	8	52	23	20	4	51	1.66
33304558--33304650	39	2.5	37	80	7	98	27	29	22	20	1.98
33305005--33305052	3	16.0	3	82	0	60	58	6	0	35	1.23
33305006--33305054	18	2.7	18	93	0	80	55	8	0	36	1.30
33305005--33305052	12	4.0	12	91	0	69	58	6	0	35	1.23
33305706--33305731	11	2.4	11	100	0	52	0	42	7	50	1.31
33306088--33306130	21	2.0	21	81	0	50	58	6	0	34	1.25
33308778--33308814	9	4.1	9	85	0	56	48	13	8	29	1.71
33308977--33309025	18	2.8	17	81	6	62	20	51	0	28	1.48
33309094--33309133	20	1.9	21	85	10	55	22	22	0	55	1.44
33310220--33310304	31	2.8	30	80	5	91	40	12	11	35	1.80
33314451--33314481	15	2.1	14	94	5	53	83	0	16	0	0.64
33320633--33320710	28	2.7	29	76	15	72	43	11	1	43	1.48
33321727--33321824	28	3.4	28	70	19	83	23	17	13	45	1.83
33321697--33321889	59	3.2	60	87	2	253	22	17	12	47	1.81
33321697--33321859	31	5.3	32	67	15	103	22	18	12	46	1.82
33326249--33326308	18	3.2	18	88	4	75	48	0	3	48	1.18
33329695--33329750	17	3.2	17	67	18	51	53	3	17	25	1.60
33329681--33329755	36	2.1	37	94	2	134	48	5	18	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33331537--33331593	25	2.3	25	93	0	96	19	21	17	42	1.90
33338551--33338585	17	2.0	18	88	5	54	45	2	5	45	1.41
33338888--33338948	31	2.0	31	83	0	77	47	11	4	36	1.61
33340751--33340882	71	1.9	71	85	3	187	25	7	25	42	1.81
33340844--33340931	46	1.9	46	95	0	158	31	9	19	39	1.83
33342065--33342103	18	2.2	18	100	0	78	51	28	0	20	1.48
33342083--33342159	33	2.3	33	97	0	145	42	18	6	32	1.75
33345227--33345278	26	2.1	24	85	7	68	44	1	1	51	1.23
33345268--33345299	16	1.9	17	93	6	57	46	0	0	53	1.00
33345357--33345391	18	2.0	17	88	5	52	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172