genome.fa.s22.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  146  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42028603--42028681	38	2.1	37	81	9	90	20	6	12	60	1.53
42028803--42029318	214	2.4	215	93	1	856	26	17	22	33	1.96
42028803--42029318	107	4.8	107	80	8	566	26	17	22	33	1.96
42033071--42033108	11	3.5	11	85	0	58	47	0	0	52	1.00
42037166--42037207	21	2.0	21	81	9	50	35	2	0	61	1.09
42038281--42038318	15	2.6	15	91	4	60	34	2	0	63	1.09
42039398--42039433	18	1.9	19	88	5	56	19	0	5	75	1.00
42049817--42049842	3	8.7	3	100	0	52	30	0	0	69	0.89
42054171--42054202	3	10.7	3	100	0	64	31	0	0	68	0.90
42055498--42055780	111	2.6	108	81	11	378	31	16	14	37	1.89
42062306--42062476	43	4.0	43	77	8	170	22	17	27	32	1.96
42068366--42068396	15	2.1	15	100	0	62	38	6	32	22	1.80
42072716--42072746	15	2.1	15	100	0	62	38	6	32	22	1.80
42074526--42074560	3	11.7	3	93	0	52	68	5	0	25	1.11
42074925--42075067	71	2.0	71	100	0	286	38	18	13	29	1.89
42077749--42077808	29	2.0	32	83	9	81	18	26	6	48	1.72
42078856--42078912	6	9.3	6	81	14	55	75	1	3	19	1.04
42078867--42078926	24	2.5	24	76	15	61	70	1	6	21	1.20
42078869--42078925	25	2.3	23	82	8	60	71	1	5	21	1.14
42090295--42090321	13	2.1	13	100	0	54	14	55	7	22	1.64
42099430--42099468	18	2.2	18	85	0	51	61	0	23	15	1.33
42102829--42102855	3	9.0	3	100	0	54	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42102992--42103020	3	9.7	3	100	0	58	68	0	31	0	0.89
42110082--42110120	8	4.9	8	90	0	51	25	12	25	35	1.92
42111894--42111970	33	2.3	34	80	6	86	35	15	19	29	1.93
42120686--42120760	36	2.1	36	94	0	132	24	25	12	38	1.89
42122662--42122733	20	3.7	20	83	1	92	25	27	15	31	1.95
42123049--42123242	45	4.3	45	89	0	280	41	14	18	25	1.89
42123868--42124011	68	2.1	67	98	1	279	50	15	19	14	1.78
42126493--42126547	20	2.8	20	88	0	83	25	29	16	29	1.97
42126880--42127073	45	4.3	45	89	0	280	41	15	18	24	1.89
42127658--42127690	13	2.5	13	90	0	57	33	21	6	39	1.78
42127658--42127710	13	4.1	13	77	0	52	33	26	7	32	1.84
42136123--42136162	21	1.9	21	94	0	71	32	0	25	42	1.55
42136129--42136171	21	2.0	21	82	8	52	39	2	20	37	1.66
42139260--42139308	5	10.2	5	79	16	50	57	0	0	42	0.99
42139254--42139308	14	3.9	14	80	4	65	54	0	0	45	0.99
42141340--42141646	151	2.0	151	93	0	524	41	10	9	39	1.72
42142493--42142657	82	2.0	82	85	3	224	50	9	7	32	1.63
42153283--42153512	115	2.0	115	99	0	451	33	13	11	41	1.80
42155682--42155821	41	3.4	41	88	2	199	18	24	26	30	1.98
42155682--42155834	83	1.9	82	86	4	218	18	24	26	29	1.98
42155889--42155921	16	2.1	15	94	5	57	39	0	6	54	1.25
42156492--42156551	15	4.1	14	77	12	59	26	3	31	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42156477--42156547	29	2.5	28	86	4	88	25	2	33	38	1.71
42156432--42156547	14	8.2	13	71	16	63	25	1	36	36	1.67
42156651--42156712	21	2.9	21	75	13	56	25	0	35	38	1.56
42157468--42157500	12	2.9	12	86	13	52	51	0	6	42	1.26
42157469--42157529	10	5.8	10	78	7	59	52	0	4	42	1.23
42157463--42157535	31	2.4	29	80	14	85	49	1	4	45	1.29
42157784--42157833	19	2.6	19	79	17	50	44	8	2	46	1.44
42160808--42160836	14	2.1	14	100	0	58	34	13	0	51	1.42
42162732--42162783	18	2.8	18	78	13	61	38	1	0	59	1.08
42162735--42162799	19	3.5	18	76	17	62	35	1	1	61	1.15
42164616--42164660	23	2.0	23	82	8	56	33	17	2	46	1.61
42164864--42165022	26	6.4	26	68	11	91	40	20	18	20	1.92
42168304--42168561	41	6.3	41	90	0	408	22	28	20	29	1.98
42168310--42168561	82	3.1	82	99	0	495	22	28	19	28	1.98
42168773--42168809	19	1.9	19	94	0	65	45	18	0	35	1.50
42169695--42169763	34	2.0	35	86	8	97	49	7	0	43	1.30
42176008--42176265	41	6.3	41	90	0	408	22	28	20	29	1.98
42176014--42176265	82	3.1	82	99	0	495	22	28	19	28	1.98
42176478--42176515	19	2.0	19	89	0	58	47	15	0	36	1.46
42177402--42177470	34	2.0	35	86	8	97	49	7	0	43	1.30
42177849--42177922	30	2.5	30	86	0	103	31	24	16	28	1.96
42180494--42180602	51	2.2	50	91	1	173	30	23	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42180556--42180676	37	3.3	37	90	1	181	35	24	13	26	1.92
42180629--42180738	50	2.2	50	96	1	202	32	24	11	30	1.91
42180812--42180844	17	1.9	17	88	11	50	45	21	0	33	1.52
42184426--42184450	12	2.1	12	100	0	50	8	16	36	40	1.77
42184593--42184752	72	2.2	73	90	1	250	20	23	28	26	1.99
42184481--42184878	186	2.1	186	87	1	584	23	24	26	25	2.00
42184666--42184993	113	2.9	114	88	2	509	23	23	26	26	2.00
42184497--42185106	300	2.0	299	91	1	990	24	23	26	25	2.00
42184892--42185063	72	2.3	73	87	3	231	27	22	25	25	2.00
42185038--42185117	41	2.0	41	89	0	124	22	21	27	28	1.99
42185342--42185389	22	2.2	21	78	10	53	25	0	27	47	1.52
42185610--42185673	14	4.5	14	77	11	67	25	0	39	35	1.56
42189204--42189365	43	3.8	43	85	2	204	23	19	29	27	1.98
42189190--42189365	85	2.1	84	85	5	230	22	18	30	28	1.97
42189789--42189841	22	2.5	21	82	11	63	62	0	3	33	1.13
42190676--42190727	27	2.0	27	85	7	72	48	0	1	50	1.12
42192683--42192722	14	2.9	14	84	0	53	32	7	17	42	1.77
42192706--42192743	20	1.9	20	88	0	58	28	7	13	50	1.69
42206804--42206874	34	2.1	34	97	0	133	29	9	21	39	1.85
42209205--42209262	22	2.5	23	83	5	64	50	1	3	44	1.29
42209335--42209378	9	5.1	9	86	10	65	34	0	11	54	1.36
42209332--42209369	16	2.4	16	90	0	58	36	0	10	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42209365--42209510	68	2.1	69	96	2	276	36	5	9	47	1.59
42209489--42209520	14	2.3	14	100	0	64	25	0	0	75	0.81
42210076--42210144	36	1.9	36	90	0	111	40	7	23	28	1.81
42210766--42210803	20	1.9	20	94	0	67	15	15	10	57	1.64
42216796--42216856	4	15.2	4	100	0	122	24	26	0	49	1.51
42218917--42218975	16	3.6	16	73	8	57	61	0	3	35	1.13
42218917--42218982	33	2.0	33	91	5	107	56	0	3	40	1.15
42218789--42219149	187	1.9	188	92	3	602	52	6	8	32	1.58
42218950--42219944	305	3.3	304	87	3	1384	51	7	10	30	1.63
42219348--42219407	29	2.2	29	82	8	72	50	8	3	38	1.49
42218950--42219944	152	6.5	152	86	4	1332	51	7	10	30	1.63
42218950--42219944	457	2.2	456	91	2	1633	51	7	10	30	1.63
42225169--42225211	23	1.9	23	85	4	61	62	2	2	32	1.20
42225809--42226019	88	2.4	88	80	7	221	36	19	9	34	1.85
42226096--42226214	10	12.5	10	70	9	63	62	2	5	30	1.30
42226095--42226208	56	2.0	56	83	6	142	61	1	5	31	1.28
42226104--42226229	18	6.7	18	70	20	80	62	2	6	28	1.32
42226393--42226434	9	4.8	9	80	16	52	23	0	4	71	1.05
42226537--42226705	91	1.9	90	85	3	232	33	9	19	37	1.84
42226537--42226733	91	2.1	88	77	13	200	34	8	19	37	1.82
42229823--42229862	21	1.9	21	85	10	55	50	0	5	45	1.23
42230207--42230240	17	2.0	17	88	0	50	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42240203--42240248	18	2.3	20	78	14	51	41	2	0	56	1.11
42241933--42241966	17	2.0	17	88	0	50	50	11	20	17	1.77
42242744--42242864	41	3.0	41	87	0	152	28	19	24	27	1.99
42249425--42249458	17	2.0	17	88	0	50	50	11	20	17	1.77
42250241--42250349	41	2.7	41	86	0	137	27	20	22	29	1.98
42251575--42251655	32	2.6	32	82	2	101	51	18	2	27	1.58
42253560--42253593	16	2.1	16	88	0	50	50	14	17	17	1.79
42256392--42256432	21	2.0	21	90	0	64	29	21	29	19	1.98
42258337--42258370	16	2.1	16	88	0	50	50	14	17	17	1.79
42261601--42261633	16	2.1	16	88	5	50	57	3	0	39	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172