genome.fa.s22.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  48  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12913508--12913603	25	3.8	25	90	6	131	32	23	23	19	1.98
12919931--12919964	15	2.3	15	90	10	52	41	5	29	23	1.78
12925670--12926182	47	10.7	47	94	2	821	31	8	29	29	1.87
12925691--12926182	145	3.4	145	95	1	857	32	8	29	29	1.87
12926301--12926379	37	2.1	37	90	0	122	24	18	31	25	1.98
12932960--12933013	5	10.8	5	78	13	58	1	18	1	77	0.95
12937770--12937934	82	2.0	82	85	2	224	33	9	21	35	1.85
12939777--12939803	13	2.1	13	100	0	54	14	0	37	48	1.45
12944075--12944125	25	2.0	25	100	0	102	23	19	23	33	1.97
12946221--12946266	17	2.9	16	78	15	51	34	0	17	47	1.48
12948604--12948644	3	13.7	3	94	0	73	68	29	0	2	1.03
12949714--12949746	3	11.0	3	100	0	66	33	0	0	66	0.92
12950482--12950514	16	2.1	16	100	0	66	24	0	18	57	1.40
12957822--12957966	48	3.0	46	80	12	143	17	33	24	24	1.96
12957727--12958021	50	5.8	50	81	5	292	22	29	21	27	1.99
12957727--12958021	98	2.9	103	78	7	275	22	29	21	27	1.99
12958357--12958420	30	2.1	30	85	0	83	35	26	4	32	1.77
12960513--12960542	15	2.0	15	93	0	51	33	3	6	56	1.42
12966410--12966559	40	3.7	40	74	11	115	29	22	18	29	1.98
12968395--12968512	27	4.4	26	77	7	128	38	17	19	23	1.93
12968407--12968524	54	2.2	54	85	0	164	41	22	16	20	1.90
12968407--12968525	27	4.4	27	81	0	148	41	21	15	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12968386--12968551	81	2.1	80	85	3	217	37	21	16	23	1.93
12969573--12969615	11	3.8	11	82	11	52	67	2	2	27	1.15
12969855--12969929	38	2.0	38	83	0	96	53	5	10	30	1.58
12970128--12970160	16	2.1	16	100	0	66	63	6	0	30	1.18
12972862--12972905	21	2.1	21	82	0	52	40	13	4	40	1.65
12973692--12973738	20	2.4	20	89	3	69	19	21	4	55	1.60
12976213--12976397	101	1.8	102	85	3	266	23	17	29	29	1.97
12976266--12976397	51	2.6	50	83	4	158	22	16	29	31	1.96
12983244--12983312	27	2.5	27	95	2	120	31	28	13	26	1.93
12983758--12983784	12	2.2	12	100	0	54	40	0	7	51	1.30
12991617--12991685	27	2.5	27	95	2	120	31	28	13	26	1.93
12994661--12994715	27	2.0	26	100	0	92	40	3	41	14	1.63
13002508--13002629	43	2.9	44	82	12	148	37	23	16	22	1.93
13005951--13005982	16	1.9	17	93	6	57	43	21	0	34	1.53
13013918--13013952	17	2.1	17	94	0	61	25	22	14	37	1.92
13015854--13015982	43	2.9	44	86	2	170	24	25	20	30	1.98
13016935--13016976	15	2.9	15	85	3	59	35	9	9	45	1.69
13018847--13018908	24	2.6	24	82	2	63	32	11	4	51	1.59
13033063--13033191	49	2.6	49	78	7	129	28	21	11	37	1.89
13034250--13034291	22	1.9	22	90	9	68	35	4	2	57	1.33
13036387--13036525	41	3.3	41	88	3	206	20	23	28	28	1.99
13037310--13037340	7	4.4	7	95	0	53	19	0	35	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13037351--13037412	21	2.9	21	77	13	65	24	0	37	38	1.56
13038168--13038228	10	5.8	11	75	14	58	49	0	6	44	1.28
13038163--13038234	30	2.4	29	77	11	74	45	1	5	47	1.34
13038482--13038533	19	2.7	19	78	21	63	38	7	0	53	1.30
13042395--13042420	12	2.2	12	100	0	52	38	15	11	34	1.83
13042844--13042900	27	2.2	26	81	9	62	26	8	1	63	1.34
13043075--13043240	43	3.9	43	84	3	201	22	18	31	27	1.97
13046426--13046463	14	2.6	15	83	4	51	31	0	18	50	1.47
13049110--13049141	15	2.1	15	94	0	55	68	9	6	15	1.36
13049920--13049971	26	2.0	26	96	0	95	48	11	17	23	1.79
13053675--13053870	30	6.5	30	78	6	96	40	9	24	25	1.84
13053730--13053987	30	8.7	30	80	6	251	42	11	24	21	1.86
13053730--13053987	59	4.4	59	76	8	272	42	11	24	21	1.86
13053676--13053927	119	2.1	120	85	0	344	42	10	24	23	1.85
13061849--13062038	45	4.2	44	79	4	175	24	15	24	35	1.94
13064067--13064257	30	6.3	30	75	4	143	37	12	25	24	1.91
13064093--13064257	60	2.8	58	78	8	170	37	12	25	24	1.91
13065986--13066233	49	4.9	50	78	7	218	23	27	20	28	1.99
13069139--13069174	17	2.1	18	89	5	56	36	13	5	44	1.68
13071035--13071074	19	2.1	19	85	0	53	35	2	7	55	1.42
13072599--13072690	48	1.9	47	84	2	121	20	15	27	36	1.92
13072848--13072892	22	2.0	22	83	8	56	31	0	17	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13076606--13076644	19	2.1	19	100	0	78	25	15	20	38	1.92
13078454--13078510	16	3.6	15	77	11	60	49	1	1	47	1.22
13078551--13078599	20	2.7	18	77	22	57	51	4	2	42	1.32
13088700--13089126	106	4.0	106	91	0	649	32	15	18	33	1.92
13100394--13100895	44	11.7	43	68	12	232	31	21	21	26	1.98
13100395--13101033	129	5.0	129	89	0	859	30	20	21	26	1.98
13100742--13100919	44	4.1	44	65	17	111	33	19	21	25	1.97
13100395--13101161	129	5.9	128	84	5	810	30	20	21	27	1.98
13103117--13103548	106	4.1	106	91	2	681	32	18	16	32	1.93
13103117--13103548	211	2.0	212	91	0	715	32	18	16	32	1.93
13106385--13106439	26	2.1	26	83	12	69	69	0	3	27	1.05
13106667--13106740	33	2.1	36	82	9	91	70	1	2	25	1.09
13106707--13106744	20	1.9	20	89	10	60	63	0	0	36	0.95
13107502--13107542	21	2.0	20	85	4	55	65	4	2	26	1.25
13128619--13128915	40	7.4	40	85	1	380	32	16	29	20	1.95
13128675--13128781	20	5.4	20	63	10	58	32	17	32	16	1.93
13130250--13130483	41	5.7	41	90	0	360	17	21	30	29	1.97
13130824--13130902	22	3.6	22	76	10	65	24	2	27	45	1.66
13130879--13130918	14	2.9	14	88	7	55	25	2	25	47	1.64
13130855--13130938	35	2.4	36	85	2	107	22	2	29	45	1.65
13130889--13130973	34	2.5	34	81	11	93	24	2	30	42	1.67
13131123--13131164	16	2.5	17	92	7	68	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13131701--13131747	23	2.0	23	92	8	78	65	4	0	29	1.11
13131874--13131955	40	2.0	40	88	2	119	31	17	17	34	1.93
13132607--13132688	38	2.2	38	84	4	103	20	14	8	56	1.65
13136857--13137078	43	5.2	43	90	2	297	24	19	30	25	1.98
13137121--13137160	21	1.9	21	89	0	62	37	27	22	12	1.90
13140174--13140230	27	2.1	27	87	9	82	26	26	24	22	2.00
13145110--13145190	40	2.0	40	80	4	92	37	17	23	22	1.94
13145133--13145311	40	4.5	40	81	6	211	32	16	28	21	1.95
13146982--13147360	43	8.8	43	84	3	449	25	33	18	22	1.97
13147218--13147381	86	1.9	87	79	2	188	34	28	15	21	1.95
13151803--13151905	10	10.1	10	78	11	102	44	3	0	51	1.19
13151798--13151905	40	2.7	39	88	4	144	46	3	0	49	1.26
13151814--13151901	30	2.9	29	90	6	131	47	3	0	48	1.18
13151814--13151910	29	3.3	27	82	13	104	46	4	0	49	1.21
13152299--13152332	13	2.5	13	90	4	50	44	32	0	23	1.54
13153441--13153536	41	2.3	41	89	0	156	33	23	21	20	1.97
13153602--13153712	40	2.8	41	79	4	120	19	16	22	41	1.90
13154496--13154533	18	2.1	18	90	9	60	73	5	5	15	1.19
13159486--13159616	50	2.6	51	81	6	160	32	28	16	22	1.96
13165397--13165501	52	2.0	52	94	0	183	46	11	17	24	1.81
13165851--13165898	23	2.1	23	88	0	69	45	22	6	25	1.75
13168506--13168532	13	2.1	13	100	0	54	48	29	0	22	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13169390--13169435	16	2.9	16	78	12	51	45	0	2	52	1.13
13169330--13169540	107	2.0	108	95	0	379	43	1	5	49	1.33
13169488--13169529	15	2.9	15	82	10	52	47	0	0	52	1.00
13169663--13169772	45	2.6	44	81	11	133	31	28	5	34	1.80
13169753--13169820	16	4.2	16	88	0	100	36	36	0	26	1.57
13171917--13172203	50	5.6	50	84	2	295	25	20	31	22	1.98
13171917--13172252	100	3.3	100	81	3	343	25	20	30	22	1.98
13171973--13172252	150	1.9	149	81	2	337	25	21	31	21	1.98
13199333--13199625	147	2.0	146	96	0	541	34	12	25	26	1.92
13200798--13200841	22	2.0	22	95	0	79	36	15	25	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172