genome.fa.s22.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  135  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38822825--38822857	17	1.9	17	93	0	57	24	0	30	45	1.53
38822997--38823033	15	2.6	15	87	8	51	51	0	0	48	1.00
38823128--38823162	18	2.0	17	88	5	52	54	0	0	45	0.99
38823154--38823183	16	1.9	15	93	6	51	50	10	0	40	1.36
38822995--38823282	120	2.4	120	94	1	490	49	4	2	43	1.37
38823298--38823725	91	4.7	90	93	2	723	46	2	3	46	1.34
38823692--38823730	17	2.5	15	84	12	51	58	0	0	41	0.98
38842619--38842710	46	2.0	46	100	0	184	17	30	6	45	1.73
38844776--38844832	28	2.0	28	96	0	105	45	22	7	24	1.77
38847479--38847544	24	2.8	24	76	2	62	63	12	10	13	1.52
38847498--38847544	24	2.0	24	86	0	67	61	8	14	14	1.55
38849758--38850028	43	6.3	43	89	0	398	27	31	18	21	1.97
38853021--38853080	24	2.5	24	89	2	95	58	8	10	23	1.57
38854253--38854294	22	2.0	22	90	4	68	28	0	42	28	1.56
38854318--38854598	76	3.7	76	90	2	442	33	10	11	45	1.74
38854503--38854709	115	1.8	115	97	0	396	31	12	13	42	1.81
38854618--38854787	76	2.2	76	92	2	288	31	11	12	44	1.77
38854428--38854787	191	1.9	190	94	1	632	31	12	12	43	1.79
38855690--38855853	89	1.8	89	82	2	213	45	25	3	25	1.68
38856325--38856524	41	4.9	41	84	3	258	30	23	20	26	1.98
38858494--38858685	48	4.0	48	95	0	348	27	28	13	30	1.94
38865265--38865330	29	2.2	30	81	2	71	33	6	24	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38869645--38869709	30	2.3	30	84	7	82	60	0	1	38	1.07
38888276--38888379	45	2.3	45	83	5	138	38	19	19	23	1.93
38888593--38888669	40	1.9	40	89	0	118	41	22	7	28	1.81
38889310--38889391	35	2.4	35	86	8	107	51	3	0	45	1.19
38893951--38893992	17	2.4	17	92	4	66	73	0	0	26	0.83
38893951--38893991	9	4.6	9	85	8	57	75	0	0	24	0.80
38893945--38893992	9	5.5	8	82	12	51	70	2	0	27	0.98
38905919--38906075	77	2.0	78	91	4	257	47	5	12	34	1.64
38911146--38911190	22	2.0	23	82	8	56	28	33	2	35	1.70
38912330--38912379	20	2.5	19	80	6	55	38	20	6	36	1.77
38913308--38913362	29	2.0	29	86	13	80	16	14	9	60	1.59
38917716--38917765	21	2.4	21	78	15	68	40	10	2	48	1.48
38917891--38917970	41	2.0	41	89	0	124	32	21	18	27	1.97
38919955--38920525	285	2.0	285	99	0	1124	27	20	15	36	1.93
38926091--38926146	29	1.9	29	82	7	69	69	5	5	19	1.28
38927199--38927227	3	9.7	3	100	0	58	31	0	0	68	0.89
38931939--38932006	28	2.3	30	80	5	77	26	17	16	39	1.90
38938327--38938382	22	2.5	22	85	5	69	30	17	26	25	1.97
38947020--38947079	26	2.3	27	78	18	65	60	1	1	36	1.17
38952697--38952738	3	14.0	3	94	0	75	64	0	2	33	1.07
38954450--38954844	131	3.0	132	76	8	489	25	22	21	31	1.98
38954329--38954754	218	2.0	218	86	2	597	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38954381--38954798	44	9.6	44	77	5	314	25	22	21	30	1.98
38956819--38956891	34	2.1	34	84	0	101	27	20	26	26	1.99
38967299--38967338	19	2.0	20	85	4	55	77	7	2	12	1.07
38969185--38970482	262	4.9	262	97	1	2350	27	22	18	30	1.98
38969185--38970482	525	2.5	525	96	1	2352	27	22	18	30	1.98
38969179--38970480	88	14.9	89	74	11	998	27	23	18	30	1.98
38969184--38970605	41	32.7	41	69	14	347	27	22	18	30	1.98
38970400--38970624	44	5.3	41	71	11	143	26	21	19	32	1.97
38970565--38970875	86	3.6	85	79	10	308	22	22	23	31	1.98
38970610--38970875	86	3.1	88	82	5	317	23	22	22	31	1.98
38970732--38970874	44	3.2	45	63	11	105	21	21	22	34	1.97
38972114--38972140	1	27.0	1	100	0	54	0	0	0	100	0.00
38982896--38982929	17	2.0	17	88	0	50	76	8	2	11	1.12
38987501--38987540	13	3.1	13	92	0	71	30	5	22	42	1.75
38992384--38992424	22	1.9	21	85	5	55	48	2	0	48	1.14
38992484--38992526	22	2.1	22	87	12	65	39	6	0	53	1.28
39001825--39001898	21	3.5	22	85	10	100	35	27	22	14	1.94
39001824--39001911	21	4.0	23	82	10	96	34	25	22	18	1.96
39001825--39001911	44	2.0	41	82	6	102	34	25	22	17	1.96
39003074--39003108	3	11.7	3	93	0	61	65	2	0	31	1.07
39003239--39003281	14	3.1	14	93	0	77	55	2	0	41	1.12
39017033--39017087	26	2.1	26	86	6	76	43	9	21	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39027835--39027910	24	3.4	24	66	17	72	32	6	17	43	1.74
39035515--39035566	24	2.2	24	85	0	68	38	3	7	50	1.50
39039838--39039892	27	2.0	27	89	0	83	34	25	10	29	1.90
39040193--39040217	3	8.3	3	100	0	50	32	0	0	68	0.90
39043378--39043416	20	2.0	20	84	0	51	61	2	5	30	1.31
39044972--39045019	24	2.0	23	84	15	62	60	8	2	29	1.37
39054653--39054777	43	2.9	43	79	8	155	29	28	20	22	1.98
39059117--39059146	15	2.0	15	100	0	60	26	26	6	40	1.81
39060170--39060497	163	2.0	163	99	0	647	33	27	6	32	1.83
39067886--39067929	20	2.1	22	84	16	58	68	9	9	13	1.40
39070728--39071000	67	4.0	67	87	5	331	41	17	22	18	1.90
39070738--39071000	101	2.6	102	91	3	417	40	18	23	18	1.91
39072154--39072202	26	2.0	25	84	8	64	40	2	0	57	1.10
39072181--39072249	30	2.3	31	87	2	95	46	1	0	52	1.09
39072183--39072250	31	2.2	30	86	2	91	45	2	0	51	1.16
39072508--39072552	19	2.3	20	85	11	58	40	2	0	57	1.11
39074184--39074216	3	11.0	3	100	0	66	33	0	0	66	0.92
39074494--39074540	24	2.0	24	95	0	85	46	10	0	42	1.38
39074678--39074717	21	1.9	21	89	0	62	40	2	0	57	1.12
39099203--39099236	17	2.0	17	88	0	50	50	0	2	47	1.16
39099852--39099948	8	12.8	8	74	22	52	35	1	2	61	1.14
39099908--39099945	17	2.3	16	83	16	51	28	2	2	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39126711--39126748	16	2.3	17	86	4	51	39	0	0	60	0.97
39128273--39128302	16	1.9	16	93	6	53	43	0	13	43	1.43
39128941--39128968	12	2.3	12	100	0	56	14	0	0	85	0.59
39130177--39130203	7	3.9	7	100	0	54	59	0	0	40	0.98
39134838--39134891	24	2.2	25	93	6	94	48	12	7	31	1.69
39139170--39139204	18	2.0	17	88	5	52	0	22	5	71	1.07
39145762--39145788	12	2.2	12	100	0	54	44	7	14	33	1.73
39150146--39150179	13	2.6	14	86	13	54	32	17	5	44	1.73
39151761--39151788	14	2.0	14	100	0	56	35	14	14	35	1.86
39161894--39161934	20	2.0	21	85	4	57	24	9	19	46	1.80
39166217--39166294	29	2.6	30	79	4	86	48	6	5	39	1.51
39174018--39174047	5	6.0	5	92	0	51	20	3	0	76	0.92
39178216--39178254	15	2.9	14	88	11	55	53	0	0	46	1.00
39180908--39180964	22	2.5	22	78	18	64	64	5	7	22	1.38
39181689--39181717	13	2.1	14	93	6	51	75	0	10	13	1.04
39182551--39183188	44	14.5	44	77	5	646	29	26	16	27	1.97
39182540--39183163	132	4.7	132	87	2	763	29	26	16	27	1.97
39195531--39195586	21	2.5	22	77	13	62	64	5	7	23	1.40
39196311--39196339	13	2.1	14	93	6	51	75	0	10	13	1.04
39198938--39199009	27	2.7	27	88	0	90	16	23	16	43	1.88
39212073--39212123	17	3.2	17	71	28	58	47	0	0	52	1.00
39212139--39212208	21	3.5	20	79	9	79	40	2	4	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39212931--39212978	25	2.0	25	84	8	64	56	2	2	39	1.23
39213204--39213253	23	2.2	22	82	3	55	22	0	2	76	0.89
39214288--39214327	15	2.5	15	84	8	53	30	2	0	67	1.04
39220729--39220762	2	17.0	2	100	0	68	50	0	0	50	1.00
39230064--39230099	19	1.9	19	88	5	56	36	0	2	61	1.11
39230227--39230339	19	5.8	19	81	4	145	38	10	15	35	1.83
39230228--39230334	40	2.7	40	88	2	155	38	11	14	35	1.82
39230227--39230365	59	2.3	58	82	7	154	37	9	15	37	1.80
39231643--39231839	98	2.0	98	95	0	358	27	10	25	37	1.88
39235935--39235964	13	2.2	14	94	5	53	83	0	13	3	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172