genome.fa.s22.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  172  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51336824--51336885	26	2.4	26	97	0	115	16	14	40	29	1.88
51347307--51347411	55	1.9	56	82	5	133	54	2	0	42	1.15
51347702--51347734	13	2.4	14	85	5	50	42	3	0	54	1.15
51347702--51347762	26	2.3	26	74	0	68	42	9	1	45	1.47
51348819--51348843	6	4.2	6	100	0	50	16	16	52	16	1.76
51355977--51356001	11	2.3	11	100	0	50	32	0	0	68	0.90
51356078--51356119	21	2.0	21	100	0	84	47	9	9	33	1.68
51359220--51359254	18	1.9	18	88	0	52	22	40	11	25	1.88
51374072--51374187	60	1.9	60	91	0	187	37	16	10	36	1.83
51376604--51376644	21	2.0	21	95	0	73	31	0	12	56	1.36
51376634--51376723	8	10.4	8	69	19	56	35	2	15	46	1.58
51376542--51376656	61	1.9	61	82	10	146	32	0	12	55	1.37
51376625--51376697	27	2.7	27	91	2	121	34	1	13	50	1.50
51376960--51377042	38	2.2	39	93	2	141	39	2	1	56	1.20
51377075--51377196	60	2.0	60	85	3	165	54	14	0	30	1.47
51377237--51377330	19	5.1	19	73	19	92	52	13	0	34	1.41
51377237--51377492	27	9.8	27	69	18	150	52	14	0	32	1.47
51377250--51377320	8	8.1	8	75	17	52	52	12	0	35	1.40
51377418--51377558	54	2.4	57	77	14	130	53	13	0	31	1.45
51377173--51377518	181	1.9	180	92	4	565	52	14	0	31	1.48
51378446--51378629	37	5.0	37	94	1	309	25	22	15	36	1.93
51378603--51378704	52	1.9	53	88	4	152	28	22	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51381844--51382038	49	4.0	48	92	2	291	31	29	14	24	1.94
51383293--51383659	37	10.0	37	93	2	618	25	22	15	36	1.94
51383297--51383659	183	2.0	183	93	1	629	25	21	15	36	1.94
51383621--51383746	52	2.6	46	76	13	144	29	23	12	34	1.92
51383633--51383732	52	1.9	52	89	0	155	29	22	14	35	1.93
51389780--51390371	116	5.1	116	76	5	313	28	22	17	32	1.96
51407913--51408115	101	2.0	101	100	0	406	27	18	11	41	1.86
51408803--51408852	24	2.2	23	85	7	66	28	14	14	44	1.83
51418064--51418116	23	2.3	23	100	0	106	16	13	24	45	1.83
51431757--51431801	21	2.1	21	84	8	56	64	2	2	31	1.18
51431943--51432453	256	2.0	255	96	1	934	37	6	15	40	1.73
51437178--51437229	26	2.0	26	100	0	104	30	7	19	42	1.79
51437179--51437239	26	2.3	26	91	5	97	29	9	19	40	1.84
51459663--51459705	21	2.0	23	86	9	63	48	2	6	41	1.43
51468108--51468185	20	3.9	19	76	17	61	53	7	0	38	1.30
51468148--51468187	21	2.0	20	85	14	55	60	7	0	32	1.25
51468169--51468195	14	1.9	14	100	0	54	55	0	0	44	0.99
51472689--51472872	38	4.7	37	71	17	140	44	1	3	51	1.27
51472736--51472889	18	8.9	18	66	18	76	42	0	2	54	1.19
51472698--51472889	56	3.3	55	74	19	208	43	1	3	52	1.24
51472671--51472973	120	2.5	120	97	0	570	43	0	4	51	1.29
51473218--51473267	15	3.5	15	83	8	59	46	0	2	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51473383--51473424	15	2.7	16	82	14	52	45	0	2	52	1.13
51473374--51473415	15	2.9	15	82	10	52	47	0	0	52	1.00
51473204--51473665	157	3.0	157	95	3	809	46	4	3	44	1.41
51473527--51473561	18	2.0	17	88	5	52	45	0	0	54	0.99
51473788--51473823	16	2.2	16	95	0	63	38	38	0	22	1.54
51479819--51480128	171	1.8	172	80	4	385	26	22	13	38	1.91
51480845--51480907	28	2.2	27	81	15	74	52	0	4	42	1.22
51482812--51482846	16	2.2	16	89	0	52	11	5	37	45	1.64
51486644--51486730	31	2.8	32	79	8	90	22	20	24	32	1.98
51492795--51492847	27	1.9	28	84	3	72	11	3	35	49	1.57
51495691--51496133	221	2.0	221	99	0	868	46	14	13	25	1.81
51500392--51500839	46	9.6	45	81	13	450	28	22	14	34	1.94
51500483--51500601	36	3.0	36	75	21	130	29	21	13	36	1.91
51500437--51500601	82	2.0	82	95	0	294	29	21	13	35	1.92
51500394--51500633	128	1.9	123	87	5	347	28	22	13	34	1.93
51500608--51500641	7	4.7	7	88	3	50	26	26	2	44	1.69
51500565--51500833	52	5.2	52	85	6	370	27	23	14	34	1.93
51500519--51500839	98	3.3	98	87	7	438	28	22	14	34	1.93
51500533--51500825	150	2.0	150	93	0	505	29	22	14	34	1.93
51503894--51504615	7	100.7	7	79	7	594	13	1	41	43	1.54
51505675--51505727	27	1.9	28	84	3	72	11	3	35	49	1.57
51508568--51509010	221	2.0	221	99	0	868	46	14	13	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51513269--51513715	52	9.6	45	81	13	450	28	22	14	34	1.93
51513360--51513477	36	3.0	36	76	19	137	29	20	13	36	1.91
51513314--51513477	82	2.0	81	95	1	292	29	20	14	35	1.92
51513271--51513509	127	1.9	123	86	6	338	28	22	13	34	1.93
51513484--51513517	7	4.7	7	88	3	50	26	26	2	44	1.69
51513410--51513701	150	2.0	149	93	0	503	29	22	14	34	1.93
51513452--51513715	98	2.6	98	91	3	402	28	22	14	34	1.94
51516766--51516914	7	21.4	7	81	5	115	13	8	42	36	1.74
51516911--51517461	7	83.3	7	88	10	682	0	10	56	33	1.34
51516911--51517461	13	41.6	14	89	9	682	0	10	56	33	1.34
51517320--51526146	7	1240.9	7	89	9	11918	14	1	42	42	1.55
51526013--51526136	25	5.0	25	76	20	120	14	0	45	40	1.45
51526472--51526569	8	12.5	8	73	17	55	19	0	37	42	1.51
51526534--51526725	15	12.9	14	68	22	58	19	0	42	36	1.56
51526479--51526753	7	37.0	7	69	22	106	18	0	41	39	1.54
51526534--51526725	79	2.3	82	74	21	195	19	0	42	36	1.56
51526602--51526752	22	6.8	22	68	25	72	19	0	41	38	1.56
51526616--51526723	15	6.9	15	69	21	62	19	0	43	36	1.57
51526541--51526655	20	5.8	19	74	20	85	20	0	43	36	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172

The End!