genome.fa.s22.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  104  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30032592--30032784	51	3.8	51	79	4	212	23	18	27	30	1.97
30032781--30032875	45	2.1	45	84	0	127	27	17	22	32	1.96
30036140--30036188	3	16.3	3	83	12	57	28	0	2	69	1.00
30036110--30036186	14	5.2	15	72	21	56	23	1	2	72	1.04
30036267--30036313	19	2.5	18	80	13	51	14	2	4	78	0.99
30053537--30053589	17	3.4	17	67	32	55	30	0	16	52	1.44
30053537--30053595	29	2.0	29	100	0	118	28	0	16	54	1.43
30054850--30054908	31	2.0	29	83	12	75	55	1	3	38	1.26
30054853--30054904	26	2.0	26	84	3	68	59	1	1	36	1.19
30067280--30067316	15	2.5	15	90	0	65	27	16	13	43	1.85
30071787--30071813	7	3.9	7	100	0	54	70	0	0	29	0.88
30071877--30071925	18	2.7	18	70	3	53	61	0	4	34	1.15
30071960--30072313	179	2.0	176	84	3	460	40	10	12	36	1.77
30072361--30072442	28	3.0	28	75	12	64	32	6	1	59	1.30
30072377--30072444	28	2.5	26	81	11	82	27	7	1	63	1.30
30072501--30072535	18	2.0	17	88	5	52	28	0	2	68	1.04
30072554--30072761	90	2.4	88	80	10	250	34	8	18	38	1.80
30074743--30074804	27	2.3	27	97	0	115	29	22	33	14	1.94
30074967--30075010	21	2.2	21	92	8	74	70	0	0	29	0.88
30075276--30075313	19	2.0	19	89	0	58	50	7	5	36	1.54
30075412--30075483	27	2.7	27	93	0	117	52	12	0	34	1.39
30075497--30075521	7	3.6	7	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30075523--30075694	27	7.1	24	72	24	148	32	1	13	52	1.48
30075526--30075697	49	3.6	49	85	6	235	31	1	13	53	1.47
30075999--30076068	27	2.6	28	86	4	92	20	41	22	15	1.90
30079991--30080056	33	2.0	33	96	0	123	56	1	0	42	1.08
30080093--30080191	26	3.9	25	75	19	89	50	2	0	47	1.12
30080337--30080371	16	2.2	16	94	0	61	31	20	0	48	1.50
30082742--30082802	30	2.0	30	83	0	77	40	21	11	26	1.87
30087974--30088050	2	38.5	2	100	0	154	0	49	0	50	1.00
30089792--30089859	27	2.5	27	88	4	102	41	5	1	51	1.35
30089860--30089903	17	2.5	18	85	3	54	84	9	4	2	0.85
30089944--30090012	27	2.6	27	100	0	138	20	30	30	18	1.97
30090292--30090326	3	11.7	3	100	0	70	34	0	0	65	0.93
30091062--30091106	18	2.5	18	88	0	72	28	4	48	17	1.66
30094305--30094338	17	2.0	17	88	11	52	5	5	5	82	0.95
30094340--30094407	28	2.5	27	83	9	93	45	1	11	41	1.50
30095202--30095330	23	5.5	24	73	10	97	0	34	0	65	0.93
30095209--30095296	10	8.7	10	71	16	65	0	31	0	68	0.90
30095209--30095313	33	3.2	33	75	12	99	0	31	0	68	0.90
30095234--30095313	34	2.8	28	75	24	85	0	32	0	67	0.91
30095227--30095299	34	2.1	34	87	7	112	0	34	0	65	0.93
30095203--30095316	10	11.1	10	69	15	54	0	31	0	68	0.90
30095230--30095304	38	2.0	38	86	5	107	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30095274--30095316	22	1.9	23	85	4	61	0	30	0	69	0.88
30095227--30095317	28	2.9	30	75	19	89	0	34	0	65	0.93
30095250--30095330	42	2.0	40	82	4	99	0	35	0	64	0.94
30095365--30095432	27	2.5	27	95	0	118	19	27	26	26	1.99
30095365--30095443	27	2.9	27	88	7	108	16	27	26	29	1.97
30095515--30095565	24	2.1	24	89	7	77	50	1	9	37	1.47
30098706--30098871	83	2.0	83	97	0	314	32	12	23	31	1.92
30105974--30106022	23	2.1	23	92	0	80	26	20	12	40	1.87
30119771--30119965	49	4.0	49	93	0	309	31	29	14	24	1.95
30121218--30121363	37	4.0	37	93	1	242	24	21	16	36	1.94
30121327--30121595	46	5.6	46	90	6	358	28	22	14	34	1.93
30121370--30121589	52	4.3	52	87	8	326	27	22	14	35	1.93
30121327--30121595	98	2.8	94	83	12	348	28	22	14	34	1.93
30124014--30124401	27	14.3	27	81	6	419	43	17	18	20	1.89
30131384--30131412	15	1.9	15	100	0	58	34	34	13	17	1.89
30135047--30135100	23	2.4	22	81	9	56	3	14	5	75	1.12
30135936--30135986	6	8.5	6	91	0	57	19	7	15	56	1.63
30135926--30135986	18	3.4	18	83	0	77	21	8	13	57	1.62
30137273--30137319	21	2.2	22	84	3	60	68	4	19	8	1.33
30145214--30145240	14	1.9	14	100	0	54	29	22	3	44	1.70
30146708--30146775	32	2.1	32	91	0	109	52	7	32	7	1.57
30147815--30147860	7	6.4	7	83	11	58	13	2	0	84	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30155210--30155397	46	4.1	45	78	3	153	28	22	20	28	1.98
30155269--30155397	46	2.8	47	81	4	156	29	20	20	28	1.98
30163958--30164235	27	10.3	27	82	5	285	40	20	18	19	1.91
30166118--30166265	43	3.5	42	80	4	163	29	25	16	29	1.97
30170898--30170935	3	12.7	3	100	0	76	65	0	0	34	0.93
30172135--30172174	17	2.4	17	91	8	64	5	5	42	47	1.47
30172311--30172370	28	2.0	30	81	12	70	60	0	3	36	1.14
30183058--30183241	37	5.0	37	92	1	291	25	21	15	36	1.93
30183204--30183328	52	2.6	46	78	14	151	28	23	13	34	1.93
30183215--30183314	52	1.9	52	89	0	155	29	22	14	35	1.93
30192929--30193277	44	7.5	44	67	18	179	31	18	21	28	1.97
30192929--30193340	142	2.9	142	91	0	662	32	17	21	28	1.97
30197065--30197103	19	2.0	19	85	5	51	30	7	2	58	1.39
30197301--30197406	50	2.1	50	98	0	203	49	8	13	29	1.71
30197307--30197389	27	3.2	27	62	19	68	50	9	12	27	1.70
30199337--30199384	21	2.3	21	78	7	53	52	4	0	43	1.20
30199863--30199910	23	2.1	22	88	11	71	62	4	0	33	1.14
30199877--30199929	19	2.7	20	80	11	65	58	1	0	39	1.09
30199877--30199936	18	3.2	19	83	4	68	58	3	0	38	1.15
30199883--30199964	18	4.7	18	71	8	62	53	2	0	43	1.13
30199942--30199980	20	2.0	19	85	5	51	51	7	0	41	1.31
30205097--30205218	35	3.5	35	78	6	131	31	23	22	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30205258--30205306	20	2.4	21	96	3	91	38	26	0	34	1.57
30212428--30212479	22	2.4	22	80	0	59	44	15	19	21	1.87
30212486--30212558	32	2.3	32	87	0	110	39	15	19	26	1.90
30212486--30212574	32	2.8	31	77	13	99	38	17	19	24	1.93
30212770--30212833	24	2.6	25	87	4	87	40	21	7	29	1.82
30212852--30213157	27	11.3	27	84	2	328	23	20	19	36	1.95
30213039--30213212	54	3.2	54	78	10	158	20	17	19	42	1.89
30213071--30213212	27	5.3	27	74	11	121	19	16	19	45	1.86
30216156--30216187	15	2.1	15	94	0	55	43	3	25	28	1.69
30220075--30220230	42	3.7	42	74	16	151	30	26	17	25	1.97
30223430--30223535	35	3.2	35	63	26	93	46	3	22	27	1.69
30223428--30223558	65	2.0	65	100	0	262	43	4	22	29	1.73
30229268--30229307	6	6.7	6	97	0	71	0	62	0	37	0.95
30235537--30235709	42	4.1	42	90	0	258	29	20	21	28	1.98
30239940--30240112	40	4.4	40	81	5	183	36	21	18	22	1.95
30245030--30245077	24	2.0	24	87	0	69	16	22	8	52	1.71
30245213--30245418	76	2.7	75	81	6	236	33	20	20	25	1.97
30245544--30245597	27	2.0	27	100	0	108	48	14	3	33	1.62
30250343--30250639	76	3.9	76	85	4	402	25	22	21	30	1.99
30250365--30250562	40	5.2	40	64	14	137	25	21	23	29	1.99
30258020--30258069	19	2.7	18	84	9	64	36	4	12	48	1.59
30259341--30259516	31	5.7	31	83	3	214	30	9	17	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30259341--30259516	61	2.9	61	86	0	226	30	9	17	43	1.79
30259634--30259738	43	2.4	43	80	1	120	28	18	20	33	1.96
30261758--30261892	50	2.7	50	77	2	119	26	20	30	22	1.98
30262151--30262189	20	2.0	20	90	10	62	56	5	23	15	1.59
30264334--30264372	15	2.5	16	83	4	53	28	0	5	66	1.12
30266914--30266961	23	2.1	23	96	0	87	22	14	12	50	1.77
30268857--30268953	45	2.2	45	96	1	178	43	21	10	24	1.84
30268957--30268985	14	2.1	14	100	0	58	31	34	0	34	1.58
30274875--30274923	25	1.9	25	87	4	71	32	22	0	44	1.53
30277969--30278005	7	5.3	7	93	0	65	27	2	0	70	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172