genome.fa.s22.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  152  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44022631--44022715	41	2.1	40	91	6	136	36	12	3	47	1.59
44022628--44022706	20	3.9	20	79	15	99	36	15	2	45	1.59
44022793--44022846	20	2.7	20	77	5	65	48	12	1	37	1.53
44023026--44023074	24	2.0	24	96	0	89	34	20	10	34	1.86
44028199--44028270	17	4.1	17	71	13	56	34	0	1	63	1.03
44028202--44028270	26	2.6	25	77	13	68	36	0	1	62	1.04
44028193--44028268	28	2.9	27	77	13	70	34	0	1	64	1.02
44037710--44037827	27	4.4	27	84	2	148	21	22	32	23	1.98
44037915--44037952	10	3.7	10	89	6	58	76	0	23	0	0.79
44037914--44037954	11	3.8	11	90	6	66	75	0	24	0	0.80
44043515--44044037	162	3.3	161	71	16	515	29	9	9	51	1.66
44043426--44044202	319	2.4	319	93	0	1322	29	10	8	51	1.66
44044539--44044698	4	39.0	4	71	22	61	0	30	0	69	0.89
44044530--44044650	43	2.9	41	85	10	147	0	27	0	72	0.85
44044530--44044654	44	2.9	42	87	10	166	0	27	0	72	0.84
44044561--44044683	24	5.2	26	76	18	110	0	30	0	69	0.88
44044745--44044812	27	2.5	26	84	13	77	20	33	25	20	1.97
44051746--44051781	2	18.0	2	100	0	72	0	50	0	50	1.00
44053868--44053894	13	2.1	13	100	0	54	29	14	18	37	1.91
44056241--44056282	15	2.9	15	82	10	52	47	0	0	52	1.00
44060196--44060305	58	1.9	58	86	1	159	28	11	9	50	1.69
44060199--44060319	57	2.1	58	81	1	136	27	13	8	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44070371--44070415	19	2.4	19	80	0	54	26	0	4	68	1.08
44071055--44071104	26	1.9	26	95	0	91	42	14	2	42	1.56
44073983--44074034	18	2.8	19	83	11	63	23	5	5	65	1.36
44073984--44074038	27	2.0	27	82	6	67	25	5	5	63	1.38
44074086--44074134	8	5.9	8	81	9	53	30	0	0	69	0.89
44074086--44074136	17	3.0	17	91	0	75	31	0	0	68	0.90
44074093--44074136	9	5.1	9	83	10	65	34	0	0	65	0.93
44077836--44077903	16	4.2	16	92	0	109	38	32	0	29	1.58
44086697--44086776	24	3.3	23	70	19	65	17	28	21	32	1.96
44094935--44094977	11	3.7	11	81	9	50	60	11	0	27	1.31
44097092--44097137	17	2.6	18	75	24	53	32	2	0	65	1.05
44101933--44101968	17	2.1	17	89	0	54	38	0	0	61	0.96
44102939--44102965	6	4.5	6	100	0	54	70	0	29	0	0.88
44106318--44106418	46	2.2	46	83	3	123	37	17	12	31	1.88
44107808--44107852	23	2.1	21	88	12	65	44	2	6	46	1.42
44107843--44107911	26	2.7	25	78	8	77	33	4	14	47	1.64
44108428--44108479	25	2.1	25	92	0	86	40	5	5	48	1.51
44111046--44111073	14	2.0	14	100	0	56	78	7	7	7	1.09
44112686--44112714	3	9.7	3	100	0	58	68	0	31	0	0.89
44114444--44114522	13	5.6	13	80	14	77	37	1	48	12	1.50
44114444--44114522	7	11.1	7	70	22	58	37	1	48	12	1.50
44114454--44114546	45	2.1	43	92	4	150	34	2	52	10	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44114444--44114579	60	2.3	58	85	11	170	36	2	48	12	1.53
44114592--44114835	30	8.2	30	94	0	422	52	0	9	37	1.38
44115641--44115697	16	3.6	16	75	17	64	38	12	1	47	1.51
44115635--44115699	32	2.0	32	100	0	130	41	12	3	43	1.58
44115781--44115833	21	2.5	21	90	0	79	30	37	9	22	1.86
44120243--44121674	724	2.0	705	94	3	2501	24	18	17	39	1.92
44131935--44132068	58	2.3	58	97	0	250	37	10	33	18	1.85
44138642--44138876	90	2.6	90	81	4	251	30	15	22	31	1.95
44139508--44139535	14	2.0	14	100	0	56	50	7	14	28	1.69
44139503--44139537	14	2.3	15	85	14	54	54	5	11	28	1.59
44140444--44140470	2	13.5	2	100	0	54	48	0	0	51	1.00
44140745--44140803	27	2.1	28	84	3	75	61	0	3	35	1.13
44149509--44149539	14	2.2	14	94	0	53	38	0	12	48	1.42
44149592--44149665	24	3.1	24	98	0	139	22	20	18	37	1.94
44153496--44153551	23	2.5	23	81	18	73	26	30	0	42	1.56
44153496--44153552	22	2.6	21	84	15	71	26	31	0	42	1.56
44153496--44153551	11	5.0	11	77	16	62	26	30	0	42	1.56
44154323--44154363	21	2.0	21	90	9	66	14	17	2	65	1.37
44155834--44155862	15	1.9	15	100	0	58	37	0	0	62	0.96
44157778--44157898	39	3.1	39	95	0	224	23	7	18	50	1.72
44165709--44165758	23	2.1	25	82	14	61	22	6	16	56	1.62
44171436--44171470	17	2.0	18	94	5	63	57	2	5	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44198615--44198674	31	1.9	32	86	3	86	43	1	5	50	1.34
44199814--44199913	9	11.1	9	69	15	64	30	3	3	64	1.24
44199849--44199929	28	3.0	27	79	13	78	30	2	7	59	1.38
44199851--44199943	18	5.1	18	69	19	50	31	2	7	59	1.37
44204613--44204657	23	2.0	23	82	8	56	44	6	2	46	1.42
44207802--44208007	92	2.3	91	86	5	276	45	3	4	46	1.39
44207935--44207982	26	1.9	25	84	16	64	45	0	2	52	1.12
44208128--44208175	18	2.8	18	74	22	50	43	0	0	56	0.99
44208145--44208196	15	3.6	15	80	12	56	44	0	1	53	1.11
44208030--44208432	120	3.4	120	96	2	717	42	2	4	49	1.37
44208178--44208375	66	3.2	66	68	21	208	42	3	6	47	1.44
44208265--44208316	15	3.6	15	80	12	56	44	0	1	53	1.11
44208394--44208435	15	2.7	16	82	14	52	45	0	2	52	1.13
44208385--44208426	15	2.9	15	82	10	52	47	0	0	52	1.00
44208369--44208684	156	2.0	157	94	0	553	48	4	2	43	1.38
44208537--44208571	18	2.0	17	88	5	52	45	0	0	54	0.99
44208808--44208843	16	2.2	16	100	0	72	38	36	0	25	1.56
44211677--44211749	36	2.1	35	97	2	137	16	26	12	45	1.82
44211968--44212008	21	2.0	21	90	0	64	19	29	21	29	1.98
44226309--44226355	24	2.0	24	86	0	67	25	2	42	29	1.67
44227551--44227578	7	4.0	7	100	0	56	14	0	0	85	0.59
44239076--44239106	16	2.0	16	93	6	55	16	12	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44240708--44240772	27	2.4	27	97	0	121	29	21	35	13	1.92
44240995--44241020	12	2.2	12	100	0	52	38	0	15	46	1.46
44241085--44241391	22	14.0	21	71	20	109	31	1	13	54	1.47
44241109--44241165	19	2.9	19	86	2	78	33	0	14	52	1.41
44241078--44241260	61	3.0	59	76	17	169	31	1	13	54	1.46
44241208--44241391	27	7.8	24	80	16	176	30	1	14	53	1.47
44241246--44241391	19	7.6	19	72	15	95	32	1	13	52	1.49
44241229--44241378	75	2.0	76	97	1	284	30	1	14	54	1.48
44241200--44241420	124	1.8	121	80	12	263	31	1	14	52	1.51
44241208--44241439	75	3.3	66	81	15	227	30	1	15	53	1.50
44241432--44241553	60	2.0	60	84	3	156	31	0	13	54	1.46
44241587--44241667	38	2.2	38	93	2	137	54	2	2	40	1.27
44241704--44241745	16	2.7	15	85	7	57	38	2	2	57	1.25
44246737--44246790	22	2.4	22	81	9	65	3	29	1	64	1.21
44246851--44246930	27	3.0	27	79	3	90	26	32	22	18	1.97
44249214--44249276	30	2.1	30	91	5	101	26	1	14	57	1.47
44249396--44249423	11	2.5	11	100	0	56	67	7	0	25	1.15
44252621--44252653	7	4.7	7	100	0	66	57	0	15	27	1.38
44265717--44265757	20	2.0	20	95	0	73	56	14	12	17	1.68
44267317--44267382	33	1.9	33	84	9	87	56	1	4	37	1.29
44271332--44271425	48	2.0	48	87	4	136	20	12	26	40	1.88
44279614--44279666	22	2.5	22	81	3	63	54	1	5	37	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44279748--44279772	9	2.8	9	100	0	50	36	0	16	48	1.46
44290800--44290949	71	2.1	73	81	2	169	34	14	16	35	1.89
44296415--44296458	22	2.0	21	82	4	52	29	4	2	63	1.26
44296709--44296750	10	4.2	10	82	17	52	40	0	0	59	0.97
44296703--44296750	19	2.5	20	87	9	66	43	0	0	56	0.99
44296712--44296760	19	2.6	19	83	3	64	36	0	2	61	1.08
44307024--44307073	18	2.5	20	84	9	59	44	6	2	48	1.39
44309735--44309779	18	2.5	19	82	10	58	57	0	40	2	1.11
44309735--44309787	17	2.9	18	78	15	56	56	1	39	1	1.21
44310370--44310394	12	2.1	12	100	0	50	8	32	8	52	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172