genome.fa.s22.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  57  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15467414--15467518	44	2.4	44	84	4	115	31	23	19	25	1.98
15467244--15467813	218	2.6	217	83	3	693	30	18	21	28	1.97
15473392--15473427	18	2.0	18	100	0	72	27	16	0	55	1.42
15487082--15487121	19	2.1	19	86	9	55	45	2	5	47	1.38
15487576--15487600	10	2.5	10	100	0	50	60	0	8	32	1.26
15487750--15487783	18	1.9	17	94	5	59	41	5	5	47	1.52
15496291--15496412	22	5.3	22	62	21	61	25	29	11	33	1.91
15496263--15496470	47	4.4	47	88	2	294	26	29	9	34	1.87
15499859--15500138	40	7.0	40	90	0	416	25	26	21	25	2.00
15500196--15500270	38	2.0	38	86	5	107	24	26	18	30	1.98
15501028--15501115	40	2.2	40	100	0	176	43	10	9	37	1.70
15502144--15502285	50	2.8	50	77	11	155	30	23	15	30	1.95
15509791--15509978	51	3.7	51	80	4	168	30	25	15	28	1.96
15520318--15520643	61	5.4	61	81	3	318	26	23	15	34	1.95
15520318--15520678	122	3.0	122	80	2	395	26	23	15	34	1.94
15543691--15544277	196	3.0	196	96	0	1057	31	23	14	31	1.94
15545370--15545476	50	2.1	50	85	0	151	20	30	21	27	1.98
15548122--15548344	39	5.7	38	82	9	218	24	21	27	26	1.99
15548122--15548303	79	2.3	79	84	6	235	25	21	27	25	2.00
15554121--15554294	56	3.1	56	95	3	325	44	9	22	22	1.81
15555421--15555642	40	5.6	39	86	5	279	24	21	27	25	1.99
15555473--15555675	40	5.2	40	85	7	229	26	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15557485--15557522	17	2.2	17	90	4	58	5	0	26	68	1.11
15558901--15558979	37	2.1	37	88	0	113	26	31	17	24	1.97
15559098--15559501	47	8.6	47	89	6	568	28	30	8	32	1.87
15563250--15563407	41	4.0	41	83	7	150	26	29	20	22	1.99
15563262--15563437	40	4.6	39	79	13	170	24	30	22	22	1.99
15563815--15563891	28	2.7	28	82	8	93	28	32	15	23	1.95
15563873--15563975	43	2.4	43	100	0	206	26	35	15	22	1.94
15565696--15565773	36	2.1	37	88	2	113	26	32	16	24	1.96
15565890--15566833	47	20.1	47	93	3	1525	28	29	9	32	1.88
15566153--15566226	22	3.3	22	64	17	62	28	31	10	29	1.91
15565890--15566833	143	6.7	143	91	5	1530	28	29	9	32	1.88
15594330--15594370	21	2.0	21	85	0	55	21	29	14	34	1.93
15597029--15597219	25	7.6	25	71	15	94	20	27	17	34	1.96
15597040--15597090	27	2.0	25	88	7	75	23	27	17	31	1.97
15604254--15604322	28	2.4	30	88	11	108	39	8	37	14	1.77
15604249--15604412	30	5.5	30	76	9	115	39	10	29	20	1.86
15604283--15604447	90	1.8	90	84	0	222	36	10	29	23	1.88
15604283--15604485	90	2.3	90	81	1	219	35	11	29	22	1.90
15604312--15604467	30	5.2	30	76	6	118	36	10	26	25	1.89
15604630--15604673	21	2.0	22	83	12	56	34	6	20	38	1.79
15606180--15606223	22	2.0	22	86	0	61	34	2	4	59	1.30
15609962--15610025	25	2.6	25	80	7	60	28	21	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15616122--15616191	25	2.9	25	67	12	58	28	17	21	32	1.96
15619535--15619595	24	2.6	24	87	7	81	47	9	24	18	1.78
15625534--15625635	49	2.1	48	85	5	132	30	8	11	49	1.70
15632502--15632603	50	2.1	49	84	1	132	33	8	9	48	1.67
15638517--15638551	15	2.4	15	95	4	63	42	17	5	34	1.73
15644062--15644114	21	2.6	20	80	11	63	32	13	15	39	1.85
15645518--15645721	48	4.2	48	85	0	246	27	20	28	24	1.99
15650013--15650111	37	2.7	36	82	3	126	38	16	19	26	1.92
15655042--15655141	45	2.2	45	87	0	146	34	23	16	27	1.95
15655147--15655333	51	3.7	50	81	7	225	32	26	16	25	1.96
15655146--15655329	101	1.8	101	90	3	298	33	25	16	25	1.96
15665972--15666015	21	2.1	21	100	0	88	38	9	13	38	1.77
15665971--15666026	21	2.8	19	87	10	85	37	8	16	37	1.80
15665984--15666047	23	2.9	23	82	13	73	37	6	15	40	1.73
15667057--15667081	9	2.8	9	100	0	50	24	0	8	68	1.16
15667293--15667550	98	2.6	98	83	4	243	30	10	22	37	1.87
15667357--15667550	98	2.0	98	92	0	325	30	9	23	36	1.87
15672789--15672920	45	3.0	45	68	10	110	27	20	25	27	1.99
15672901--15673949	132	8.0	131	91	1	1634	28	18	23	29	1.97
15673779--15673975	88	2.2	86	79	9	202	29	16	22	30	1.96
15674178--15674250	19	3.8	19	94	0	128	36	10	16	35	1.84
15674175--15674257	38	2.2	36	87	8	130	38	9	18	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15674210--15674273	19	3.0	22	86	8	80	37	6	17	39	1.75
15674239--15674283	23	2.0	23	86	4	65	33	4	15	46	1.66
15675275--15675299	9	2.8	9	100	0	50	24	0	8	68	1.16
15675577--15675771	98	2.0	98	89	0	300	30	9	24	35	1.87
15686654--15686721	29	2.3	27	72	16	64	58	2	1	36	1.22
15686842--15686887	24	1.9	24	90	0	74	45	0	2	52	1.13
15691058--15691107	23	2.1	24	88	3	75	26	20	28	26	1.99
15694360--15694496	50	2.7	50	79	0	157	27	22	27	22	1.99
15694747--15694774	12	2.3	12	100	0	56	57	7	17	17	1.62
15702311--15702359	20	2.5	20	83	3	64	59	8	22	10	1.56
15703628--15703723	29	3.4	28	74	8	95	27	16	27	29	1.97
15706278--15706390	33	3.4	33	85	0	145	16	14	46	22	1.83
15708997--15709176	28	6.5	28	84	6	206	30	26	11	32	1.91
15709018--15709178	57	2.9	57	85	4	211	31	26	10	31	1.90
15717026--15717079	22	2.5	22	74	14	58	75	3	0	20	0.95
15720839--15720868	3	10.0	3	100	0	60	33	33	0	33	1.58
15723025--15723143	20	5.9	20	75	3	105	12	31	19	36	1.89
15723025--15723138	60	1.9	60	85	3	158	13	28	20	37	1.90
15725263--15725321	30	2.0	29	83	9	75	57	6	11	23	1.58
15736100--15736130	16	1.9	16	93	0	53	54	3	12	29	1.53
15740879--15740921	18	2.4	18	88	0	59	39	46	2	11	1.53
15740892--15740916	13	1.9	13	100	0	50	40	48	0	12	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15741056--15741097	9	4.7	9	82	8	50	28	7	16	47	1.73
15748376--15748502	48	2.6	50	83	5	159	31	32	16	19	1.94
15748373--15748548	51	3.5	50	81	6	187	31	30	15	22	1.95
15756641--15756686	21	2.2	21	84	0	56	34	23	19	21	1.96
15761075--15761248	27	6.4	27	81	2	188	37	18	18	25	1.94
15761075--15761248	81	2.1	81	86	2	233	37	18	18	25	1.94
15761316--15761373	24	2.4	24	85	5	82	17	8	25	48	1.75
15761548--15761683	32	4.3	32	82	4	168	21	19	19	38	1.93
15761548--15761668	64	1.9	64	89	0	188	22	19	19	38	1.94
15764415--15764451	18	2.0	19	89	5	58	24	0	29	45	1.53
15773045--15773144	50	2.0	50	88	0	146	36	17	18	29	1.93
15777504--15777529	13	2.0	13	100	0	52	61	30	0	7	1.24
15779627--15779651	13	1.9	13	100	0	50	40	24	4	32	1.73
15783151--15783249	28	3.5	29	86	9	125	27	15	28	29	1.96
15788660--15788684	13	1.9	13	100	0	50	56	28	0	16	1.41
15789543--15789663	44	2.9	41	76	7	125	30	25	18	25	1.98
15790783--15790807	13	1.9	13	100	0	50	48	20	0	32	1.50
15793567--15793622	15	3.5	15	73	23	51	17	1	1	78	0.92
15798528--15798585	24	2.4	24	97	0	107	24	36	32	6	1.82
15800083--15800152	27	2.6	27	95	2	113	31	28	12	27	1.93
15800083--15800177	28	3.4	28	89	2	129	32	28	12	26	1.93
15808017--15808382	30	12.3	30	77	7	264	24	25	12	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15808071--15808147	29	2.6	30	87	2	120	19	29	10	40	1.85
15808017--15808233	119	1.8	119	84	2	301	23	27	12	35	1.92
15808017--15808382	179	2.0	179	86	1	509	24	25	12	37	1.91
15809158--15809205	21	2.3	23	76	23	61	20	8	4	66	1.35
15816388--15816430	16	2.7	16	82	7	52	30	6	16	46	1.73
15816432--15816465	15	2.3	15	89	0	50	41	14	17	26	1.88
15824629--15824854	113	2.0	113	95	0	407	27	13	16	42	1.85
15838488--15839011	270	1.9	269	86	4	741	31	21	20	26	1.98
15838535--15840212	563	2.9	564	90	6	2441	31	23	19	25	1.98
15839359--15840212	300	2.9	300	96	2	1571	31	24	19	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172