genome.fa.s22.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Length:  51526817

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  170  of  172  ( 20605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50519384--50519408	13	1.9	13	100	0	50	40	0	4	56	1.18
50526490--50526560	35	2.0	35	100	0	142	29	19	14	36	1.91
50527079--50527171	42	2.2	42	96	1	170	41	19	0	38	1.51
50528668--50528800	45	3.0	44	83	7	164	30	26	18	24	1.98
50528613--50528800	45	4.2	44	75	13	163	30	26	17	25	1.97
50530598--50530639	14	3.1	14	79	3	50	66	0	0	33	0.92
50541015--50541045	6	5.2	6	100	0	62	16	0	0	83	0.64
50560120--50560158	3	13.0	3	88	0	51	25	33	0	41	1.56
50560120--50560158	15	2.6	15	87	0	60	25	33	0	41	1.56
50560122--50560156	18	1.9	18	100	0	70	22	34	0	42	1.54
50568623--50568662	16	2.5	16	88	8	55	50	10	7	32	1.64
50572942--50573017	38	2.0	38	100	0	152	26	15	13	44	1.83
50581128--50581165	5	7.6	5	96	0	58	52	0	0	47	1.00
50596076--50596119	22	2.0	23	86	4	63	52	6	2	38	1.41
50596159--50596280	61	2.0	61	100	0	244	44	11	11	32	1.76
50602478--50602508	8	3.8	8	91	8	53	48	12	9	29	1.73
50611045--50611085	20	2.1	20	86	4	57	31	4	12	51	1.60
50616070--50616106	18	2.2	17	90	9	58	43	2	10	43	1.53
50617465--50617691	73	3.2	70	78	10	216	60	4	8	26	1.45
50622553--50622586	16	2.1	16	88	0	50	50	14	17	17	1.79
50625385--50625425	21	2.0	21	90	0	64	29	21	29	19	1.98
50627330--50627363	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50637695--50637818	30	4.1	30	93	1	203	25	24	6	43	1.78
50637705--50637812	15	7.2	15	67	12	78	25	22	7	44	1.79
50642286--50642379	30	3.1	30	89	1	134	26	23	6	43	1.77
50642296--50642373	15	5.2	15	65	11	52	26	20	7	44	1.78
50642835--50642881	22	2.0	23	84	8	60	57	0	10	31	1.33
50644439--50644563	31	4.0	31	96	2	232	32	9	15	43	1.79
50644439--50644563	63	2.0	62	96	1	232	32	9	15	43	1.79
50655629--50655686	29	2.0	30	83	10	75	55	1	3	39	1.27
50659913--50659947	2	18.0	2	88	5	54	48	2	0	48	1.16
50666218--50666243	7	3.7	7	100	0	52	30	0	0	69	0.89
50674339--50674405	19	3.5	19	100	0	134	31	16	26	25	1.96
50677447--50677477	16	1.9	16	93	0	53	54	3	6	35	1.42
50679738--50679975	44	5.5	44	74	8	168	26	22	20	30	1.98
50680827--50680858	13	2.4	14	85	15	50	62	6	21	9	1.47
50680835--50680861	13	2.1	13	100	0	54	51	7	25	14	1.68
50728161--50728199	3	13.0	3	83	0	51	61	2	5	30	1.31
50729295--50729387	27	3.6	27	88	10	149	16	7	40	35	1.76
50729687--50729779	44	2.1	44	91	0	150	30	22	11	35	1.90
50730503--50730548	18	2.5	18	80	19	51	21	4	4	69	1.24
50736062--50736095	7	5.0	7	89	7	52	82	0	14	2	0.79
50736062--50736095	13	2.5	13	95	4	59	82	0	14	2	0.79
50742446--50742511	31	2.1	31	88	0	96	21	10	24	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50743118--50743142	6	4.2	6	100	0	50	48	0	0	52	1.00
50744632--50744698	34	1.9	35	87	3	100	31	8	14	44	1.76
50749430--50749455	12	2.2	12	100	0	52	42	26	15	15	1.87
50759456--50759487	3	10.7	3	100	0	64	68	0	31	0	0.90
50759683--50759725	21	2.0	22	90	4	70	46	18	18	16	1.84
50764707--50764748	20	2.1	20	82	8	50	26	0	4	69	1.08
50765506--50765581	30	2.6	28	77	6	80	34	0	7	57	1.28
50771479--50771687	52	4.1	51	87	9	293	35	14	22	27	1.93
50771471--50771687	98	2.1	99	87	6	301	35	14	22	26	1.93
50771583--50771798	37	5.3	44	87	9	199	37	14	21	26	1.92
50771651--50771796	37	4.0	37	93	1	242	36	16	21	24	1.94
50773050--50773242	49	3.9	49	94	0	314	24	15	30	30	1.95
50779080--50779286	52	4.1	51	85	10	275	35	14	22	27	1.93
50779182--50779397	37	5.3	44	87	9	199	37	14	21	26	1.92
50779250--50779395	37	4.0	37	93	1	242	36	16	21	24	1.94
50780997--50781023	2	13.5	2	100	0	54	48	0	0	51	1.00
50795168--50795315	79	1.9	80	86	1	217	34	8	8	48	1.64
50795691--50795721	16	1.9	16	93	0	53	35	0	3	61	1.12
50796654--50796690	18	2.0	19	89	5	58	37	2	0	59	1.12
50799414--50799645	116	2.0	116	100	0	464	37	13	12	35	1.84
50802811--50802851	21	2.0	21	85	9	57	36	2	0	60	1.10
50803774--50803915	19	7.2	20	69	15	89	60	1	5	32	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50803775--50803846	30	2.5	29	80	8	85	68	1	4	26	1.16
50803772--50803915	39	3.7	38	71	12	112	60	1	5	32	1.28
50813325--50813378	26	2.0	27	82	10	67	53	3	7	35	1.47
50819133--50819204	28	2.6	28	84	8	85	44	0	4	51	1.20
50819246--50819280	18	2.0	17	88	5	52	45	0	0	54	0.99
50819370--50819421	15	3.6	15	80	12	56	44	0	1	53	1.11
50819245--50819662	119	3.4	119	94	3	678	43	2	5	49	1.37
50819489--50819540	15	3.6	15	80	12	56	44	0	1	53	1.11
50819611--50819645	18	2.0	17	88	5	52	45	0	0	54	0.99
50824656--50824722	31	2.2	31	84	10	84	31	17	22	28	1.97
50826663--50826752	11	8.4	11	80	15	91	58	0	3	37	1.14
50826663--50826752	23	4.2	23	75	16	111	58	0	3	37	1.14
50826686--50826770	40	2.1	40	95	4	154	64	0	2	32	1.06
50830955--50831022	31	2.2	31	86	0	91	50	2	1	45	1.26
50833256--50833309	28	1.9	28	85	7	74	53	18	3	24	1.60
50833271--50833315	21	2.1	21	83	0	54	55	17	4	22	1.60
50836346--50836379	16	2.1	16	100	0	68	50	5	11	32	1.63
50837309--50837631	130	2.5	130	89	3	499	35	9	17	37	1.83
50837564--50837727	85	1.9	85	83	4	215	39	9	18	32	1.83
50837434--50837855	214	2.0	215	87	3	618	36	9	17	36	1.81
50837647--50838028	129	2.9	129	81	5	450	36	7	17	38	1.78
50837309--50837975	344	1.9	344	84	6	879	36	9	17	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50838296--50838367	35	2.1	35	100	0	144	15	13	23	47	1.81
50845333--50845395	31	2.0	31	84	0	81	49	14	7	28	1.71
50850106--50850143	4	9.5	4	100	0	76	50	26	0	23	1.50
50863015--50863343	163	2.0	163	98	0	640	34	18	17	30	1.93
50868806--50868875	11	6.5	11	78	18	69	44	1	1	52	1.18
50870204--50870270	28	2.4	27	75	9	71	56	1	2	38	1.24
50875912--50875942	16	1.9	16	93	0	53	51	6	3	38	1.44
50879065--50879091	14	1.9	14	100	0	54	37	25	14	22	1.93
50880895--50880962	31	2.2	31	91	0	109	32	17	16	33	1.92
50906986--50907012	13	2.1	13	100	0	54	44	0	22	33	1.53
50911071--50911099	2	14.5	2	100	0	58	0	0	48	51	1.00
50913087--50913126	18	2.3	18	87	8	57	57	5	0	37	1.21
50925866--50926047	99	1.9	96	87	3	265	45	12	15	26	1.82
50932611--50932770	79	2.0	79	96	0	293	30	23	11	33	1.91
50934746--50934797	26	2.0	26	100	0	104	30	19	26	23	1.98
50937771--50937796	13	2.0	13	100	0	52	61	7	30	0	1.24
50938217--50938274	31	1.9	30	92	3	98	22	22	5	50	1.69
50940567--50940611	22	2.0	22	84	16	58	62	6	0	31	1.21
50947864--50947903	18	2.2	18	86	0	53	37	5	12	45	1.64
50949700--50949733	16	2.1	16	88	0	50	50	14	17	17	1.79
50952531--50952571	21	2.0	21	90	0	64	29	21	29	19	1.98
50954477--50954510	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50957932--50958304	206	1.8	207	82	4	484	22	15	19	42	1.88
50959509--50959575	29	2.3	29	89	0	98	32	10	13	43	1.78
50962374--50962414	21	2.0	21	90	0	64	19	29	21	29	1.98
50967069--50967115	4	11.8	4	100	0	94	51	23	0	25	1.49
50975777--50975802	3	8.7	3	100	0	52	0	0	69	30	0.89
50980451--50980513	30	2.1	30	100	0	126	33	6	9	50	1.60
50981061--50981130	28	2.4	29	83	9	81	71	2	4	21	1.16
50987221--50987269	12	4.1	12	91	0	62	36	24	12	26	1.91
50987239--50987270	4	8.0	4	92	0	55	46	25	3	25	1.67
50990806--50990856	21	2.4	22	78	18	63	52	0	1	45	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172